Strain Fitness in Shewanella amazonensis SB2B around Sama_2426

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
2,919,924	+				-1.1
2,919,924	+				+0.7
2,919,924	+				+0.3
2,919,925	-				-0.4
2,919,925	-				-0.1
2,919,925	-				-0.4
2,919,928	-				+0.3
2,919,961	-				+0.3
2,919,961	-				+1.4
2,919,961	-				+0.3
2,919,978	+				+0.8
2,919,978	+				-0.1
2,919,978	+				+1.0
2,919,993	+				-0.5
2,920,004	+				-0.3
2,920,005	-				-0.1
2,920,050	+				-0.9
2,920,050	+				-0.6
2,920,051	-				-0.6
2,920,051	-				+0.2
2,920,051	-				-0.0
2,920,078	+				+0.1
2,920,078	+				-0.1
2,920,078	+				-0.7
2,920,079	-				-0.1
2,920,079	-				+1.6
2,920,079	-				-0.6
2,920,085	+				-1.5
2,920,089	+				-0.0
2,920,089	+				+0.3
2,920,089	+				-0.9
2,920,090	-				-0.5
2,920,090	-				-2.2
2,920,090	-				-1.9
2,920,090	-				-0.7
2,920,110	+				-0.0
2,920,110	+				-1.0
2,920,110	+				-0.6
2,920,110	+				+0.8
2,920,110	+				-0.3
2,920,110	+				-0.6
2,920,111	-				-1.1
2,920,114	+				+0.1
2,920,114	+				-2.0
2,920,114	+				-1.4
2,920,114	+				+1.0
2,920,114	+				+1.1
2,920,114	+				-1.5
2,920,114	+				+1.2
2,920,114	+				-0.3
2,920,114	+				+0.4
2,920,114	+				+0.4
2,920,114	+				-0.6
2,920,115	-				+0.3
2,920,115	-				+0.2
2,920,115	-				-0.3
2,920,115	-				-0.4
2,920,115	-				+0.7
2,920,115	-				-0.6
2,920,115	-				-1.4
2,920,115	-				+0.3
2,920,115	-				+0.4
2,920,115	-				+0.8
2,920,115	-				-0.4
2,920,115	-				-0.4
2,920,115	-				-0.1
2,920,115	-				-0.2
2,920,115	-				+1.0
2,920,115	-				-1.5
2,920,115	-				-1.0
2,920,115	-				-0.2
2,920,115	-				-0.9
2,920,131	+				+1.6
2,920,172	+				+0.9
2,920,172	+				+0.3
2,920,172	+				+0.8
2,920,172	+				+0.1
2,920,173	-				-2.2
2,920,173	-				+1.5
2,920,173	-				+1.9
2,920,205	-				+0.7
2,920,205	-				+0.7
2,920,215	+				-1.0
2,920,215	+				-1.5
2,920,215	+				+0.7
2,920,216	-				+0.3
2,920,216	-				-0.8
2,920,216	-				+2.0
2,920,220	+				+0.8
2,920,220	+				-0.0
2,920,221	-				+0.1
2,920,226	+				+0.2
2,920,226	+				-0.0
2,920,227	-				+0.3
2,920,237	+				+0.2
2,920,244	+				-1.0
2,920,244	+				+0.3
2,920,252	+				-1.6
2,920,253	-				-0.8
2,920,257	+				+1.2
2,920,320	+		Sama_2425	0.13	+0.5
2,920,361	+		Sama_2425	0.20	+0.1
2,920,362	-		Sama_2425	0.20	+0.7
2,920,364	+		Sama_2425	0.21	+0.2
2,920,365	-		Sama_2425	0.21	+1.2
2,920,402	-		Sama_2425	0.27	+0.5
2,920,411	+		Sama_2425	0.29	-0.3
2,920,411	+		Sama_2425	0.29	+0.3
2,920,411	+		Sama_2425	0.29	+0.7
2,920,411	+		Sama_2425	0.29	+1.1
2,920,411	+		Sama_2425	0.29	+0.6
2,920,411	+		Sama_2425	0.29	+1.5
2,920,412	-		Sama_2425	0.29	-2.3
2,920,412	-		Sama_2425	0.29	-0.3
2,920,412	-		Sama_2425	0.29	+0.6
2,920,412	-		Sama_2425	0.29	+0.0
2,920,412	-		Sama_2425	0.29	-0.5
2,920,412	-		Sama_2425	0.29	-1.0
2,920,417	-		Sama_2425	0.30	-1.0
2,920,417	-		Sama_2425	0.30	-1.1
2,920,417	-		Sama_2425	0.30	-0.8
2,920,429	+		Sama_2425	0.32	+1.5
2,920,429	+		Sama_2425	0.32	+0.4
2,920,429	+		Sama_2425	0.32	-0.2
2,920,451	+		Sama_2425	0.36	-0.6
2,920,451	+		Sama_2425	0.36	-0.3
2,920,452	-		Sama_2425	0.36	+0.2
2,920,526	+		Sama_2425	0.49	+0.3
2,920,527	-		Sama_2425	0.49	-2.1
2,920,527	-		Sama_2425	0.49	+0.3
2,920,588	+		Sama_2425	0.60	+0.9
2,920,588	+		Sama_2425	0.60	-0.8
2,920,598	+		Sama_2425	0.61	+1.7
2,920,618	+		Sama_2425	0.65	+2.0
2,920,619	-		Sama_2425	0.65	+0.4
2,920,619	-		Sama_2425	0.65	-1.6
2,920,622	-		Sama_2425	0.65	-0.8
2,920,671	+		Sama_2425	0.74	+1.3
2,920,692	+		Sama_2425	0.78	+1.7
2,920,706	+		Sama_2425	0.80	-1.6
2,920,758	+		Sama_2425	0.89	-0.4
2,920,759	-		Sama_2425	0.89	-0.7
2,920,794	+				-1.3
2,920,795	-				+0.1
2,920,795	-				-1.4
2,920,796	+				+0.9
2,920,796	+				+0.5
2,920,797	-				-0.2
2,920,797	-				-0.5
2,920,818	+				-0.6
2,920,818	+				-1.0
2,920,818	+				+0.1
2,920,818	+				-0.5
2,920,819	-				-0.2
2,920,842	+				-0.3
2,920,843	-				+0.6
2,920,847	+				-0.7
2,920,847	+				-1.6
2,920,870	-				-0.0
2,920,870	-				+2.2
2,920,870	-				-1.5
2,920,937	+				+0.9
2,920,937	+				+0.1
2,920,938	-				-1.7
2,920,938	-				-0.9
2,920,938	-				-0.5
2,920,938	-				-1.0
2,920,963	-				-0.2
2,920,972	+				-2.2
2,920,972	+				+1.3
2,920,973	-				+0.3
2,920,973	-				-1.5
2,921,009	-				+1.3
2,921,024	-		Sama_2426	0.11	+0.1
2,921,024	-		Sama_2426	0.11	+1.3
2,921,053	-		Sama_2426	0.14	+0.2
2,921,096	-		Sama_2426	0.18	+0.2
2,921,118	+		Sama_2426	0.20	-0.5
2,921,119	-		Sama_2426	0.20	+0.5
2,921,166	-		Sama_2426	0.24	-2.6
2,921,176	-		Sama_2426	0.25	-0.3
2,921,176	-		Sama_2426	0.25	-1.2
2,921,176	-		Sama_2426	0.25	-0.4
2,921,176	-		Sama_2426	0.25	-2.2
2,921,176	-		Sama_2426	0.25	-2.5
2,921,180	-		Sama_2426	0.26	-1.0
2,921,311	-		Sama_2426	0.38	-1.2
2,921,311	-		Sama_2426	0.38	-0.9
2,921,392	+		Sama_2426	0.45	+0.1
2,921,402	-		Sama_2426	0.46	-0.5
2,921,474	-		Sama_2426	0.53	-1.1
2,921,550	-		Sama_2426	0.60	-1.3
2,921,663	-		Sama_2426	0.70	-1.5
2,921,663	-		Sama_2426	0.70	-1.0
2,921,663	-		Sama_2426	0.70	-1.7
2,921,722	+		Sama_2426	0.76	-1.0
2,921,728	+		Sama_2426	0.76	-1.0
2,921,729	-		Sama_2426	0.76	-1.5
2,921,858	+		Sama_2426	0.88	-2.0
2,921,859	-		Sama_2426	0.88	+1.3
2,921,865	+		Sama_2426	0.89	-1.7
2,921,865	+		Sama_2426	0.89	-1.7
2,921,865	+		Sama_2426	0.89	-2.7
2,921,865	+		Sama_2426	0.89	-0.7
2,921,865	+		Sama_2426	0.89	-1.0
2,921,865	+		Sama_2426	0.89	+0.1
2,921,865	+		Sama_2426	0.89	-0.1
2,921,865	+		Sama_2426	0.89	-0.1
2,921,866	-		Sama_2426	0.89	-1.8
2,921,866	-		Sama_2426	0.89	-0.6
2,921,866	-		Sama_2426	0.89	-0.3
2,921,866	-		Sama_2426	0.89	-0.2
2,921,866	-		Sama_2426	0.89	-1.1
2,921,866	-		Sama_2426	0.89	-1.2
2,921,967	+				-1.0
2,921,967	+				-0.5
2,921,967	+				-0.7
2,921,967	+				-0.7
2,921,967	+				-0.8
2,921,967	+				-0.4
2,921,967	+				-0.3
2,921,968	-				-0.8
2,921,969	+				+0.3
2,921,969	+				-2.7
2,921,969	+				-0.8
2,921,969	+				-2.6
2,921,969	+				-1.6
2,921,969	+				+0.3
2,921,970	-				-1.0
2,921,970	-				-0.2
2,921,970	-				-2.1
2,921,970	-				-0.9
2,921,970	-				-1.3
2,921,970	-				-1.6
2,921,970	-				-0.8
2,922,011	+				+0.4
2,922,011	+				-0.0
2,922,011	+				-0.6
2,922,011	+				-0.3
2,922,012	-				-0.5
2,922,012	-				-0.2
2,922,053	+				+0.9
2,922,053	+				+1.0
2,922,054	-				+0.4
2,922,054	-				-0.8
2,922,054	-				+0.6
2,922,055	+				-0.5
2,922,055	+				-0.3
2,922,056	-				-0.8
2,922,056	-				-0.9
2,922,080	+				+0.0
2,922,081	-				+0.1
2,922,206	+		Sama_2427	0.33	+0.9
2,922,206	+		Sama_2427	0.33	+1.3
2,922,206	+		Sama_2427	0.33	+1.0
2,922,207	-		Sama_2427	0.33	+1.2
2,922,207	-		Sama_2427	0.33	+0.5
2,922,241	-		Sama_2427	0.42	+1.0
2,922,265	+		Sama_2427	0.48	+0.3
2,922,280	-		Sama_2427	0.52	+2.3
2,922,324	-		Sama_2427	0.63	-0.0
2,922,459	+				-0.4
2,922,460	-				+0.6
2,922,460	-				-0.1
2,922,506	+				-1.5
2,922,506	+				+0.3
2,922,506	+				+0.6
2,922,507	-				-0.2
2,922,526	+				+1.0
2,922,526	+				+0.9
2,922,656	+		Sama_2428	0.29	-1.4
2,922,656	+		Sama_2428	0.29	+0.6
2,922,656	+		Sama_2428	0.29	+0.5
2,922,679	+		Sama_2428	0.32	-1.8
2,922,679	+		Sama_2428	0.32	+0.6
2,922,811	+		Sama_2428	0.52	-0.1
2,922,811	+		Sama_2428	0.52	+0.3
2,922,812	-		Sama_2428	0.52	+1.1
2,922,812	-		Sama_2428	0.52	+0.4
2,922,812	-		Sama_2428	0.52	-0.0
2,922,838	+		Sama_2428	0.56	+0.0
2,922,840	+		Sama_2428	0.56	+0.7
2,922,840	+		Sama_2428	0.56	+0.9
2,922,841	-		Sama_2428	0.56	+0.2
2,922,854	+		Sama_2428	0.58	-0.6
2,922,854	+		Sama_2428	0.58	-1.5
2,922,854	+		Sama_2428	0.58	+0.1
2,922,855	-		Sama_2428	0.58	-1.3
2,922,855	-		Sama_2428	0.58	-0.4
2,922,855	-		Sama_2428	0.58	+0.6
2,922,916	+		Sama_2428	0.67	-0.6
2,922,940	+		Sama_2428	0.70	+0.1
2,922,940	+		Sama_2428	0.70	+0.3
2,922,940	+		Sama_2428	0.70	+1.7
2,922,940	+		Sama_2428	0.70	-0.0
2,922,940	+		Sama_2428	0.70	+1.3
2,922,941	-		Sama_2428	0.71	+0.5
2,922,941	-		Sama_2428	0.71	+0.1
2,922,941	-		Sama_2428	0.71	-0.7
2,922,942	+		Sama_2428	0.71	+0.6
2,922,942	+		Sama_2428	0.71	+0.6
2,922,942	+		Sama_2428	0.71	+0.7
2,922,943	-		Sama_2428	0.71	-1.9
2,922,943	-		Sama_2428	0.71	-0.2
2,922,952	+		Sama_2428	0.72	+0.3