Strain Fitness in Shewanella amazonensis SB2B around Sama_2349

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
2,816,509	-		Sama_2348	0.31	-0.7
2,816,509	-		Sama_2348	0.31	-0.3
2,816,517	+		Sama_2348	0.32	-1.5
2,816,517	+		Sama_2348	0.32	-1.7
2,816,540	+		Sama_2348	0.34	-1.0
2,816,541	-		Sama_2348	0.34	+1.3
2,816,570	-		Sama_2348	0.37	-3.1
2,816,570	-		Sama_2348	0.37	-0.9
2,816,607	+		Sama_2348	0.40	-1.0
2,816,607	+		Sama_2348	0.40	-1.0
2,816,608	-		Sama_2348	0.40	-1.5
2,816,608	-		Sama_2348	0.40	-2.3
2,816,655	-		Sama_2348	0.44	+0.3
2,816,823	+		Sama_2348	0.59	+0.3
2,816,824	-		Sama_2348	0.59	-0.7
2,816,876	-		Sama_2348	0.63	-2.7
2,816,944	+		Sama_2348	0.69	-1.5
2,816,944	+		Sama_2348	0.69	-0.2
2,817,033	+		Sama_2348	0.77	+0.3
2,817,033	+		Sama_2348	0.77	-2.0
2,817,033	+		Sama_2348	0.77	-2.2
2,817,034	-		Sama_2348	0.77	-2.2
2,817,034	-		Sama_2348	0.77	-2.0
2,817,034	-		Sama_2348	0.77	-1.0
2,817,034	-		Sama_2348	0.77	-0.9
2,817,034	-		Sama_2348	0.77	-3.5
2,817,034	-		Sama_2348	0.77	-1.0
2,817,057	+		Sama_2348	0.79	-2.0
2,817,058	-		Sama_2348	0.79	-0.3
2,817,058	-		Sama_2348	0.79	-1.0
2,817,100	+		Sama_2348	0.83	-1.0
2,817,101	-		Sama_2348	0.83	-1.4
2,817,101	-		Sama_2348	0.83	-3.6
2,817,101	-		Sama_2348	0.83	-1.9
2,817,101	-		Sama_2348	0.83	-2.8
2,817,179	-				-3.5
2,817,276	-				-3.2
2,817,282	+				-1.8
2,817,292	+				-1.0
2,817,292	+				-0.7
2,817,292	+				-2.5
2,817,293	-				-0.6
2,817,293	-				-1.5
2,817,293	-				-1.0
2,817,293	-				-0.0
2,817,293	-				-1.0
2,817,293	-				+1.0
2,817,293	-				-2.1
2,817,293	-				-0.7
2,817,310	-				-0.1
2,817,310	-				-2.3
2,817,310	-				-2.3
2,817,372	+				-0.8
2,817,373	-				-2.8
2,817,373	-				-1.3
2,817,373	-				-0.9
2,817,414	+				-1.3
2,817,415	-				-0.3
2,817,415	-				-2.0
2,817,428	-				-1.5
2,817,436	+				-1.0
2,817,478	+		Sama_2349	0.11	-1.8
2,817,478	+		Sama_2349	0.11	-0.8
2,817,522	+		Sama_2349	0.14	-1.5
2,817,523	-		Sama_2349	0.14	-1.9
2,817,523	-		Sama_2349	0.14	-3.0
2,817,550	+		Sama_2349	0.16	+0.3
2,817,577	-		Sama_2349	0.17	-0.7
2,817,780	+		Sama_2349	0.30	-2.2
2,817,813	-		Sama_2349	0.32	-1.2
2,817,813	-		Sama_2349	0.32	-2.0
2,817,885	+		Sama_2349	0.37	-0.5
2,817,886	-		Sama_2349	0.37	-1.0
2,817,896	-		Sama_2349	0.38	-0.1
2,817,907	+		Sama_2349	0.38	-0.3
2,817,908	-		Sama_2349	0.39	-0.3
2,817,911	+		Sama_2349	0.39	-1.3
2,817,911	+		Sama_2349	0.39	-0.7
2,817,912	-		Sama_2349	0.39	-0.3
2,817,912	-		Sama_2349	0.39	-1.0
2,817,912	-		Sama_2349	0.39	-0.6
2,817,912	-		Sama_2349	0.39	+0.1
2,817,912	-		Sama_2349	0.39	-1.9
2,817,948	-		Sama_2349	0.41	-2.6
2,817,948	-		Sama_2349	0.41	-2.4
2,817,979	+		Sama_2349	0.43	-1.7
2,817,980	-		Sama_2349	0.43	-0.7
2,817,980	-		Sama_2349	0.43	-1.7
2,817,991	-		Sama_2349	0.44	+0.3
2,817,991	-		Sama_2349	0.44	-1.6
2,818,116	-		Sama_2349	0.52	-2.4
2,818,129	+		Sama_2349	0.53	-2.4
2,818,129	+		Sama_2349	0.53	-0.0
2,818,129	+		Sama_2349	0.53	-1.5
2,818,129	+		Sama_2349	0.53	-0.3
2,818,129	+		Sama_2349	0.53	-1.9
2,818,130	-		Sama_2349	0.53	-0.7
2,818,130	-		Sama_2349	0.53	-0.9
2,818,130	-		Sama_2349	0.53	-0.5
2,818,130	-		Sama_2349	0.53	-1.7
2,818,130	-		Sama_2349	0.53	-1.0
2,818,130	-		Sama_2349	0.53	-1.2
2,818,130	-		Sama_2349	0.53	-0.9
2,818,132	-		Sama_2349	0.53	-0.3
2,818,132	-		Sama_2349	0.53	-1.7
2,818,168	+		Sama_2349	0.55	-2.2
2,818,168	+		Sama_2349	0.55	-0.7
2,818,168	+		Sama_2349	0.55	-2.5
2,818,242	+		Sama_2349	0.60	-1.5
2,818,242	+		Sama_2349	0.60	-2.4
2,818,243	-		Sama_2349	0.60	-1.7
2,818,243	-		Sama_2349	0.60	-1.5
2,818,243	-		Sama_2349	0.60	-2.0
2,818,243	-		Sama_2349	0.60	-1.7
2,818,245	+		Sama_2349	0.60	-0.7
2,818,246	-		Sama_2349	0.60	+0.7
2,818,246	-		Sama_2349	0.60	-0.5
2,818,285	-		Sama_2349	0.63	+1.9
2,818,445	-		Sama_2349	0.73	-1.3
2,818,445	-		Sama_2349	0.73	+1.3
2,818,557	-		Sama_2349	0.80	-2.3
2,818,599	+		Sama_2349	0.83	-1.0
2,818,600	-		Sama_2349	0.83	-1.9
2,818,600	-		Sama_2349	0.83	-2.4
2,818,600	-		Sama_2349	0.83	-0.3
2,818,608	+		Sama_2349	0.83	-0.8
2,818,608	+		Sama_2349	0.83	-1.9
2,818,609	-		Sama_2349	0.84	-2.1
2,818,609	-		Sama_2349	0.84	-2.2
2,818,609	-		Sama_2349	0.84	-3.2
2,818,609	-		Sama_2349	0.84	-2.3
2,818,609	-		Sama_2349	0.84	-1.6
2,818,612	-		Sama_2349	0.84	-0.3
2,818,675	+		Sama_2349	0.88	-1.1
2,818,676	-		Sama_2349	0.88	-0.7
2,818,716	+				-2.6
2,818,717	-				-1.0
2,818,717	-				-0.7
2,818,717	-				-2.6
2,818,740	+				-1.3
2,818,741	-				-1.0
2,818,806	+				-0.7
2,818,806	+				-2.5
2,818,806	+				-2.2
2,818,806	+				-0.3
2,818,807	-				+0.9
2,818,807	-				-2.3
2,818,876	+				-0.3
2,818,876	+				-2.0
2,818,876	+				-1.3
2,818,876	+				-0.7
2,818,876	+				-2.2
2,818,877	-				-1.7
2,818,877	-				+0.1
2,818,877	-				-0.5
2,818,894	-				+0.1
2,818,916	+				-2.2
2,818,934	+				-1.5
2,818,934	+				-0.7
2,818,934	+				-0.3
2,818,934	+				-3.4
2,818,934	+				-0.0
2,818,935	-				+0.9
2,818,935	-				-0.1
2,818,935	-				-0.5
2,818,935	-				-2.0
2,818,940	-				-1.0
2,818,955	-				-1.7
2,819,137	+				-0.9
2,819,137	+				-1.0
2,819,138	-				+1.4
2,819,171	+				-0.9
2,819,172	-				+1.3
2,819,192	-				-1.1
2,819,192	-				-1.7
2,819,192	-				+1.0
2,819,215	-				+0.3
2,819,282	+				-0.0
2,819,283	-				-0.5
2,819,315	-				+0.3
2,819,383	+				+0.1
2,819,384	-				+1.5
2,819,387	+				+0.4
2,819,388	-				+0.3
2,819,388	-				-0.5
2,819,388	-				+0.6
2,819,389	+				+1.3
2,819,394	-				-0.3
2,819,453	+				+2.6
2,819,540	+				+0.4
2,819,542	+				-0.7
2,819,543	-				+0.5
2,819,652	+				+0.2
2,819,653	-				-1.7
2,819,659	+				-1.5
2,819,659	+				-0.0
2,819,659	+				-0.9
2,819,661	+				+0.7
2,819,662	-				-0.3
2,819,662	-				+1.2
2,819,683	+				-0.0
2,819,701	+				-0.0
2,819,806	-				-1.5