Strain Fitness in Shewanella amazonensis SB2B around Sama_1482

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
1,793,501	+		Sama_1481	0.75	-3.0
1,793,501	+		Sama_1481	0.75	-1.0
1,793,502	-		Sama_1481	0.75	-1.9
1,793,571	+		Sama_1481	0.77	+0.9
1,793,592	+		Sama_1481	0.78	-1.2
1,793,592	+		Sama_1481	0.78	-2.1
1,793,592	+		Sama_1481	0.78	+0.6
1,793,592	+		Sama_1481	0.78	-0.1
1,793,807	-		Sama_1481	0.85	-0.8
1,793,837	+		Sama_1481	0.86	-1.8
1,793,837	+		Sama_1481	0.86	-1.6
1,793,837	+		Sama_1481	0.86	+1.6
1,793,841	+		Sama_1481	0.86	-0.1
1,793,841	+		Sama_1481	0.86	-0.2
1,793,841	+		Sama_1481	0.86	-1.5
1,793,841	+		Sama_1481	0.86	-0.1
1,793,841	+		Sama_1481	0.86	-2.7
1,793,841	+		Sama_1481	0.86	-1.3
1,793,841	+		Sama_1481	0.86	-1.1
1,793,842	-		Sama_1481	0.86	-1.1
1,793,842	-		Sama_1481	0.86	-2.3
1,793,842	-		Sama_1481	0.86	-0.8
1,793,864	+		Sama_1481	0.86	+0.5
1,793,922	-		Sama_1481	0.88	-0.8
1,793,959	+		Sama_1481	0.89	-3.9
1,793,959	+		Sama_1481	0.89	-1.9
1,793,959	+		Sama_1481	0.89	-0.4
1,793,959	+		Sama_1481	0.89	-0.4
1,793,959	+		Sama_1481	0.89	-0.4
1,793,959	+		Sama_1481	0.89	-0.5
1,793,959	+		Sama_1481	0.89	-2.0
1,793,959	+		Sama_1481	0.89	-1.8
1,793,959	+		Sama_1481	0.89	+1.2
1,793,960	-		Sama_1481	0.89	-4.3
1,793,960	-		Sama_1481	0.89	-0.4
1,793,960	-		Sama_1481	0.89	-1.1
1,793,960	-		Sama_1481	0.89	-2.3
1,793,960	-		Sama_1481	0.89	-0.9
1,793,960	-		Sama_1481	0.89	+1.2
1,793,978	+		Sama_1481	0.90	-0.9
1,793,978	+		Sama_1481	0.90	-1.2
1,793,979	-		Sama_1481	0.90	-1.8
1,794,016	+				-0.4
1,794,170	+				-2.9
1,794,328	+				-1.8
1,794,328	+				-1.4
1,794,352	-				-1.4
1,794,370	+				-1.3
1,794,374	+				-1.3
1,794,374	+				-0.2
1,794,375	-				-1.4
1,794,415	+				+0.5
1,794,415	+				-0.8
1,794,415	+				+0.8
1,794,415	+				+0.2
1,794,453	+				-0.3
1,794,454	-				+1.4
1,794,454	-				-1.2
1,794,454	-				+0.2
1,794,595	+		Sama_1482	0.10	-1.0
1,794,595	+		Sama_1482	0.10	-1.7
1,794,595	+		Sama_1482	0.10	-2.2
1,794,596	-		Sama_1482	0.10	-0.1
1,794,601	-		Sama_1482	0.11	-0.8
1,794,601	-		Sama_1482	0.11	+0.2
1,794,601	-		Sama_1482	0.11	-0.7
1,794,733	+		Sama_1482	0.20	+0.0
1,794,784	+		Sama_1482	0.24	-0.7
1,794,784	+		Sama_1482	0.24	+1.2
1,794,784	+		Sama_1482	0.24	-0.1
1,794,785	-		Sama_1482	0.24	+1.2
1,794,785	-		Sama_1482	0.24	-0.2
1,794,785	-		Sama_1482	0.24	-0.0
1,794,793	-		Sama_1482	0.24	+0.4
1,794,832	+		Sama_1482	0.27	+0.1
1,795,046	+		Sama_1482	0.43	+0.3
1,795,046	+		Sama_1482	0.43	-0.5
1,795,046	+		Sama_1482	0.43	+0.5
1,795,047	-		Sama_1482	0.43	+0.7
1,795,047	-		Sama_1482	0.43	+0.0
1,795,047	-		Sama_1482	0.43	+0.2
1,795,047	-		Sama_1482	0.43	-0.1
1,795,047	-		Sama_1482	0.43	-0.7
1,795,155	-		Sama_1482	0.51	+0.5
1,795,155	-		Sama_1482	0.51	-1.2
1,795,155	-		Sama_1482	0.51	+1.3
1,795,155	-		Sama_1482	0.51	+0.1
1,795,155	-		Sama_1482	0.51	-0.6
1,795,155	-		Sama_1482	0.51	+0.6
1,795,262	+		Sama_1482	0.58	+1.3
1,795,269	+		Sama_1482	0.59	+0.4
1,795,269	+		Sama_1482	0.59	+1.2
1,795,269	+		Sama_1482	0.59	+0.8
1,795,269	+		Sama_1482	0.59	-0.4
1,795,269	+		Sama_1482	0.59	-2.1
1,795,269	+		Sama_1482	0.59	+0.7
1,795,270	-		Sama_1482	0.59	+1.0
1,795,271	+		Sama_1482	0.59	-0.4
1,795,271	+		Sama_1482	0.59	-1.4
1,795,271	+		Sama_1482	0.59	-1.0
1,795,272	-		Sama_1482	0.59	-1.2
1,795,272	-		Sama_1482	0.59	+0.8
1,795,272	-		Sama_1482	0.59	-0.4
1,795,272	-		Sama_1482	0.59	+0.2
1,795,272	-		Sama_1482	0.59	+0.2
1,795,322	+		Sama_1482	0.62	+0.8
1,795,323	-		Sama_1482	0.63	+0.2
1,795,351	-		Sama_1482	0.65	+0.2
1,795,413	+		Sama_1482	0.69	+1.2
1,795,413	+		Sama_1482	0.69	-0.5
1,795,413	+		Sama_1482	0.69	+0.1
1,795,493	+		Sama_1482	0.75	-0.1
1,795,494	-		Sama_1482	0.75	+0.1
1,795,617	+		Sama_1482	0.84	-0.3
1,795,617	+		Sama_1482	0.84	-0.1
1,795,618	-		Sama_1482	0.84	-0.2
1,795,618	-		Sama_1482	0.84	-1.6
1,795,618	-		Sama_1482	0.84	-0.2
1,795,801	+				+0.9
1,795,801	+				-0.2
1,795,890	+				-0.8
1,795,959	-				-2.0
1,796,027	+				-2.4
1,796,027	+				-1.3
1,796,028	-				-1.0
1,796,028	-				-0.2
1,796,039	+				+0.4
1,796,039	+				-1.1
1,796,039	+				+0.7
1,796,039	+				-0.5
1,796,040	-				-0.5
1,796,040	-				-1.6
1,796,040	-				+1.2
1,796,040	-				-0.0
1,796,040	-				-0.5
1,796,040	-				-0.9
1,796,040	-				+0.0
1,796,071	+				-0.5
1,796,072	-				+0.3
1,796,127	+				-0.7
1,796,127	+				+0.7
1,796,127	+				-1.2
1,796,127	+				+0.2
1,796,128	-				-0.6
1,796,128	-				-1.1
1,796,171	+		Sama_1483	0.10	+0.0
1,796,171	+		Sama_1483	0.10	-2.5
1,796,228	-		Sama_1483	0.16	-1.0
1,796,239	-		Sama_1483	0.17	+1.4
1,796,394	-		Sama_1483	0.31	+2.2
1,796,455	+		Sama_1483	0.37	-1.1
1,796,455	+		Sama_1483	0.37	+0.4
1,796,455	+		Sama_1483	0.37	-0.1
1,796,456	-		Sama_1483	0.37	+0.7
1,796,524	+		Sama_1483	0.43	+0.3
1,796,525	-		Sama_1483	0.44	-0.9
1,796,525	-		Sama_1483	0.44	+0.7
1,796,525	-		Sama_1483	0.44	+2.2
1,796,570	+		Sama_1483	0.48	+0.5
1,796,570	+		Sama_1483	0.48	-0.6
1,796,573	-		Sama_1483	0.48	-1.5
1,796,597	+		Sama_1483	0.50	+0.6
1,796,597	+		Sama_1483	0.50	-0.4
1,796,598	-		Sama_1483	0.50	-1.1
1,796,598	-		Sama_1483	0.50	+0.2
1,796,598	-		Sama_1483	0.50	-0.1
1,796,598	-		Sama_1483	0.50	-1.8
1,796,598	-		Sama_1483	0.50	-0.5
1,796,598	-		Sama_1483	0.50	-2.3
1,796,598	-		Sama_1483	0.50	-1.1
1,796,599	+		Sama_1483	0.51	-0.1
1,796,605	+		Sama_1483	0.51	-1.6
1,796,605	+		Sama_1483	0.51	+1.2
1,796,606	-		Sama_1483	0.51	-2.1
1,796,606	-		Sama_1483	0.51	-0.2
1,796,606	-		Sama_1483	0.51	+2.0
1,796,644	+		Sama_1483	0.55	-0.6
1,796,644	+		Sama_1483	0.55	-1.5
1,796,644	+		Sama_1483	0.55	-1.3
1,796,644	+		Sama_1483	0.55	-2.6
1,796,644	+		Sama_1483	0.55	-0.5
1,796,645	-		Sama_1483	0.55	-0.4
1,796,645	-		Sama_1483	0.55	-2.0
1,796,645	-		Sama_1483	0.55	-0.4
1,796,733	-		Sama_1483	0.63	-0.3