Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0806 and Sama_0807 are separated by 49 nucleotides Sama_0807 and Sama_0808 are separated by 132 nucleotides Sama_0808 and Sama_0809 are separated by 284 nucleotides
Sama_0806: Sama_0806 - hypothetical protein (RefSeq), at 990,255 to 990,905
_0806
Sama_0807: Sama_0807 - alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen (RefSeq), at 990,955 to 991,638
_0807
Sama_0808: Sama_0808 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 991,771 to 993,069
_0808
Sama_0809: Sama_0809 - putative diguanylate phosphodiesterase (RefSeq), at 993,354 to 994,589
_0809
Position (kb) 991
992
993
994 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 990.874 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.896 kb on + strand at 990.896 kb on + strand at 990.897 kb on - strand at 990.897 kb on - strand at 990.897 kb on - strand at 990.919 kb on - strand at 990.919 kb on - strand at 990.919 kb on - strand at 990.924 kb on - strand at 990.945 kb on + strand at 990.946 kb on - strand at 990.957 kb on - strand at 990.957 kb on - strand at 990.994 kb on - strand at 991.034 kb on + strand, within Sama_0807 at 991.034 kb on + strand, within Sama_0807 at 991.035 kb on - strand, within Sama_0807 at 991.048 kb on - strand, within Sama_0807 at 991.059 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.154 kb on + strand, within Sama_0807 at 991.155 kb on - strand, within Sama_0807 at 991.155 kb on - strand, within Sama_0807 at 991.239 kb on - strand, within Sama_0807 at 991.239 kb on - strand, within Sama_0807 at 991.239 kb on - strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.249 kb on - strand, within Sama_0807 at 991.249 kb on - strand, within Sama_0807 at 991.295 kb on - strand, within Sama_0807 at 991.295 kb on - strand, within Sama_0807 at 991.295 kb on - strand, within Sama_0807 at 991.295 kb on - strand, within Sama_0807 at 991.344 kb on + strand, within Sama_0807 at 991.344 kb on + strand, within Sama_0807 at 991.422 kb on + strand, within Sama_0807 at 991.510 kb on + strand, within Sama_0807 at 991.510 kb on + strand, within Sama_0807 at 991.510 kb on + strand, within Sama_0807 at 991.511 kb on - strand, within Sama_0807 at 991.551 kb on + strand, within Sama_0807 at 991.552 kb on - strand, within Sama_0807 at 991.590 kb on + strand at 991.590 kb on + strand at 991.591 kb on - strand at 991.591 kb on - strand at 991.591 kb on - strand at 991.591 kb on - strand at 991.591 kb on - strand at 991.599 kb on + strand at 991.599 kb on + strand at 991.599 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.604 kb on - strand at 991.604 kb on - strand at 991.638 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.733 kb on - strand at 991.745 kb on + strand at 991.746 kb on - strand at 991.746 kb on - strand at 991.746 kb on - strand at 991.765 kb on - strand at 991.765 kb on - strand at 991.765 kb on - strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.773 kb on - strand at 991.773 kb on - strand at 991.773 kb on - strand at 991.773 kb on - strand at 991.773 kb on - strand at 991.773 kb on - strand at 992.087 kb on + strand, within Sama_0808 at 992.088 kb on - strand, within Sama_0808 at 992.126 kb on + strand, within Sama_0808 at 992.422 kb on - strand, within Sama_0808 at 992.453 kb on - strand, within Sama_0808 at 992.691 kb on + strand, within Sama_0808 at 992.791 kb on - strand, within Sama_0808 at 993.085 kb on - strand at 993.112 kb on + strand at 993.136 kb on - strand at 993.159 kb on - strand at 993.162 kb on + strand at 993.163 kb on - strand at 993.163 kb on - strand at 993.163 kb on - strand at 993.163 kb on - strand at 993.164 kb on + strand at 993.165 kb on - strand at 993.200 kb on - strand at 993.234 kb on + strand at 993.234 kb on + strand at 993.235 kb on - strand at 993.235 kb on - strand at 993.235 kb on - strand at 993.269 kb on - strand at 993.350 kb on + strand at 993.350 kb on + strand at 993.350 kb on + strand at 993.350 kb on + strand at 993.350 kb on + strand at 993.351 kb on - strand at 993.351 kb on - strand at 993.351 kb on - strand at 993.353 kb on + strand at 993.353 kb on + strand at 993.353 kb on + strand at 993.354 kb on - strand at 993.354 kb on - strand at 993.354 kb on - strand at 993.354 kb on - strand at 993.354 kb on - strand at 993.393 kb on + strand at 993.406 kb on + strand at 993.447 kb on + strand at 993.447 kb on + strand at 993.447 kb on + strand at 993.448 kb on - strand at 993.501 kb on + strand, within Sama_0809 at 993.502 kb on - strand, within Sama_0809 at 993.502 kb on - strand, within Sama_0809 at 993.502 kb on - strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.523 kb on + strand, within Sama_0809 at 993.524 kb on - strand, within Sama_0809 at 993.524 kb on - strand, within Sama_0809 at 993.524 kb on - strand, within Sama_0809 at 993.524 kb on - strand, within Sama_0809 at 993.527 kb on + strand, within Sama_0809 at 993.527 kb on + strand, within Sama_0809 at 993.527 kb on + strand, within Sama_0809 at 993.527 kb on + strand, within Sama_0809 at 993.527 kb on + strand, within Sama_0809 at 993.527 kb on + strand, within Sama_0809 at 993.528 kb on - strand, within Sama_0809 at 993.528 kb on - strand, within Sama_0809 at 993.556 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.625 kb on + strand, within Sama_0809 at 993.626 kb on - strand, within Sama_0809 at 993.626 kb on - strand, within Sama_0809 at 993.626 kb on - strand, within Sama_0809 at 993.626 kb on - strand, within Sama_0809 at 993.626 kb on - strand, within Sama_0809 at 993.692 kb on - strand, within Sama_0809 at 993.695 kb on + strand, within Sama_0809 at 993.695 kb on + strand, within Sama_0809 at 993.696 kb on - strand, within Sama_0809 at 993.696 kb on - strand, within Sama_0809 at 993.696 kb on - strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.718 kb on + strand, within Sama_0809 at 993.719 kb on - strand, within Sama_0809 at 993.719 kb on - strand, within Sama_0809 at 993.719 kb on - strand, within Sama_0809 at 993.775 kb on + strand, within Sama_0809 at 993.775 kb on + strand, within Sama_0809 at 993.775 kb on + strand, within Sama_0809 at 993.776 kb on - strand, within Sama_0809 at 993.776 kb on - strand, within Sama_0809 at 993.776 kb on - strand, within Sama_0809 at 993.776 kb on - strand, within Sama_0809 at 993.797 kb on + strand, within Sama_0809 at 993.798 kb on - strand, within Sama_0809 at 993.798 kb on - strand, within Sama_0809 at 993.798 kb on - strand, within Sama_0809 at 993.806 kb on + strand, within Sama_0809 at 993.806 kb on + strand, within Sama_0809 at 993.807 kb on - strand, within Sama_0809 at 993.807 kb on - strand, within Sama_0809 at 993.819 kb on + strand, within Sama_0809 at 993.820 kb on - strand, within Sama_0809 at 993.823 kb on - strand, within Sama_0809 at 993.926 kb on + strand, within Sama_0809 at 993.926 kb on + strand, within Sama_0809 at 993.946 kb on - strand, within Sama_0809 at 994.046 kb on + strand, within Sama_0809 at 994.046 kb on + strand, within Sama_0809 at 994.046 kb on + strand, within Sama_0809 at 994.047 kb on - strand, within Sama_0809
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 990,874 + +0.4 990,890 + -0.8 990,890 + -2.8 990,890 + -2.0 990,890 + +0.7 990,890 + -0.3 990,890 + +0.4 990,890 + -0.2 990,890 + -2.3 990,891 - +0.4 990,891 - +0.6 990,891 - +0.0 990,891 - +0.4 990,891 - +0.0 990,891 - +0.9 990,891 - -0.3 990,891 - +0.9 990,891 - +0.0 990,891 - +0.2 990,891 - -0.5 990,896 + +1.0 990,896 + +0.4 990,897 - +0.9 990,897 - +0.5 990,897 - +0.5 990,919 - +0.7 990,919 - -1.3 990,919 - -0.3 990,924 - -2.7 990,945 + -1.7 990,946 - -0.7 990,957 - -0.5 990,957 - -2.6 990,994 - +0.8 991,034 + Sama_0807 0.12 -0.4 991,034 + Sama_0807 0.12 +0.2 991,035 - Sama_0807 0.12 +0.2 991,048 - Sama_0807 0.14 +0.6 991,059 + Sama_0807 0.15 -0.4 991,070 + Sama_0807 0.17 -0.5 991,070 + Sama_0807 0.17 -0.2 991,070 + Sama_0807 0.17 -0.1 991,070 + Sama_0807 0.17 +1.4 991,070 + Sama_0807 0.17 +1.1 991,070 + Sama_0807 0.17 -1.1 991,071 - Sama_0807 0.17 +0.1 991,071 - Sama_0807 0.17 -0.0 991,071 - Sama_0807 0.17 -0.7 991,071 - Sama_0807 0.17 +0.5 991,071 - Sama_0807 0.17 -0.3 991,154 + Sama_0807 0.29 +2.0 991,155 - Sama_0807 0.29 -0.7 991,155 - Sama_0807 0.29 -0.0 991,239 - Sama_0807 0.42 +0.5 991,239 - Sama_0807 0.42 -1.2 991,239 - Sama_0807 0.42 +0.8 991,248 + Sama_0807 0.43 -0.4 991,248 + Sama_0807 0.43 +0.8 991,248 + Sama_0807 0.43 +0.7 991,248 + Sama_0807 0.43 +0.9 991,248 + Sama_0807 0.43 +0.5 991,248 + Sama_0807 0.43 -1.0 991,249 - Sama_0807 0.43 -0.4 991,249 - Sama_0807 0.43 +1.9 991,295 - Sama_0807 0.50 -1.8 991,295 - Sama_0807 0.50 -1.0 991,295 - Sama_0807 0.50 +0.4 991,295 - Sama_0807 0.50 -2.4 991,344 + Sama_0807 0.57 -2.2 991,344 + Sama_0807 0.57 -2.3 991,422 + Sama_0807 0.68 +0.4 991,510 + Sama_0807 0.81 -0.8 991,510 + Sama_0807 0.81 +0.1 991,510 + Sama_0807 0.81 -1.3 991,511 - Sama_0807 0.81 +0.1 991,551 + Sama_0807 0.87 +0.2 991,552 - Sama_0807 0.87 -0.4 991,590 + +0.0 991,590 + -1.0 991,591 - -0.2 991,591 - +0.3 991,591 - +1.1 991,591 - +1.1 991,591 - +0.0 991,599 + -1.0 991,599 + -0.0 991,599 + +0.0 991,603 + +1.6 991,603 + +0.4 991,603 + -1.1 991,603 + -0.2 991,603 + +1.7 991,603 + -1.0 991,604 - +1.2 991,604 - -0.0 991,638 + +0.6 991,656 + +1.1 991,656 + -0.1 991,656 + +0.7 991,656 + -0.2 991,656 + +0.5 991,656 + +0.6 991,656 + +0.7 991,657 - +1.0 991,657 - +0.0 991,657 - +0.2 991,657 - -0.1 991,657 - -1.8 991,657 - +0.1 991,662 + +0.7 991,662 + -1.0 991,662 + -0.5 991,662 + +0.3 991,662 + +0.1 991,662 + +1.4 991,662 + -1.7 991,663 - +0.4 991,663 - +0.4 991,663 - -2.5 991,663 - -0.4 991,663 - +0.2 991,663 - +1.4 991,663 - -2.4 991,663 - +0.0 991,733 - +0.4 991,745 + -0.2 991,746 - +0.2 991,746 - +0.1 991,746 - -0.5 991,765 - +0.4 991,765 - -0.5 991,765 - -0.3 991,772 + -1.1 991,772 + -0.4 991,772 + -0.5 991,772 + -1.0 991,772 + +0.2 991,772 + +0.6 991,772 + +0.0 991,773 - +1.0 991,773 - +1.0 991,773 - +0.4 991,773 - +0.0 991,773 - -1.1 991,773 - +0.8 992,087 + Sama_0808 0.24 -0.6 992,088 - Sama_0808 0.24 -1.4 992,126 + Sama_0808 0.27 -1.4 992,422 - Sama_0808 0.50 +0.7 992,453 - Sama_0808 0.53 -2.3 992,691 + Sama_0808 0.71 -1.8 992,791 - Sama_0808 0.79 +0.5 993,085 - -0.9 993,112 + -1.2 993,136 - +0.6 993,159 - +0.7 993,162 + -1.0 993,163 - +1.8 993,163 - -1.8 993,163 - -0.4 993,163 - +0.8 993,164 + -2.0 993,165 - -0.1 993,200 - -0.4 993,234 + +0.1 993,234 + -1.8 993,235 - -0.7 993,235 - -0.2 993,235 - +0.4 993,269 - -1.1 993,350 + +0.6 993,350 + -0.5 993,350 + +0.4 993,350 + -0.5 993,350 + -2.0 993,351 - +0.8 993,351 - +0.2 993,351 - +0.7 993,353 + -2.2 993,353 + -0.1 993,353 + -0.3 993,354 - -0.3 993,354 - -1.2 993,354 - -1.2 993,354 - -0.5 993,354 - +1.5 993,393 + -1.4 993,406 + +0.4 993,447 + +0.7 993,447 + -0.2 993,447 + -1.4 993,448 - +0.3 993,501 + Sama_0809 0.12 -1.0 993,502 - Sama_0809 0.12 +1.0 993,502 - Sama_0809 0.12 -0.8 993,502 - Sama_0809 0.12 -0.0 993,523 + Sama_0809 0.14 -2.0 993,523 + Sama_0809 0.14 +0.7 993,523 + Sama_0809 0.14 -0.2 993,523 + Sama_0809 0.14 -0.6 993,523 + Sama_0809 0.14 +0.4 993,523 + Sama_0809 0.14 +1.1 993,523 + Sama_0809 0.14 +0.2 993,523 + Sama_0809 0.14 -0.6 993,523 + Sama_0809 0.14 +0.1 993,523 + Sama_0809 0.14 +1.0 993,523 + Sama_0809 0.14 +0.4 993,523 + Sama_0809 0.14 +1.0 993,524 - Sama_0809 0.14 +0.8 993,524 - Sama_0809 0.14 +0.9 993,524 - Sama_0809 0.14 +0.0 993,524 - Sama_0809 0.14 +1.0 993,527 + Sama_0809 0.14 -0.6 993,527 + Sama_0809 0.14 -0.3 993,527 + Sama_0809 0.14 -0.6 993,527 + Sama_0809 0.14 +1.0 993,527 + Sama_0809 0.14 -1.7 993,527 + Sama_0809 0.14 -0.0 993,528 - Sama_0809 0.14 +0.1 993,528 - Sama_0809 0.14 -0.7 993,556 + Sama_0809 0.16 +0.8 993,625 + Sama_0809 0.22 +0.5 993,625 + Sama_0809 0.22 -2.1 993,625 + Sama_0809 0.22 +1.3 993,625 + Sama_0809 0.22 -0.2 993,625 + Sama_0809 0.22 -1.0 993,625 + Sama_0809 0.22 +0.1 993,625 + Sama_0809 0.22 +0.2 993,625 + Sama_0809 0.22 +1.4 993,626 - Sama_0809 0.22 -0.1 993,626 - Sama_0809 0.22 -0.1 993,626 - Sama_0809 0.22 +0.0 993,626 - Sama_0809 0.22 -2.3 993,626 - Sama_0809 0.22 +0.1 993,692 - Sama_0809 0.27 +0.0 993,695 + Sama_0809 0.28 +0.7 993,695 + Sama_0809 0.28 -0.2 993,696 - Sama_0809 0.28 -0.1 993,696 - Sama_0809 0.28 +0.1 993,696 - Sama_0809 0.28 -1.7 993,718 + Sama_0809 0.29 +1.5 993,718 + Sama_0809 0.29 +0.0 993,718 + Sama_0809 0.29 +0.6 993,718 + Sama_0809 0.29 +1.0 993,718 + Sama_0809 0.29 +0.6 993,718 + Sama_0809 0.29 -2.0 993,718 + Sama_0809 0.29 -1.4 993,719 - Sama_0809 0.30 -0.0 993,719 - Sama_0809 0.30 -1.6 993,719 - Sama_0809 0.30 -1.3 993,775 + Sama_0809 0.34 +0.1 993,775 + Sama_0809 0.34 -0.2 993,775 + Sama_0809 0.34 +0.5 993,776 - Sama_0809 0.34 +0.4 993,776 - Sama_0809 0.34 -0.3 993,776 - Sama_0809 0.34 -0.1 993,776 - Sama_0809 0.34 -1.0 993,797 + Sama_0809 0.36 -0.2 993,798 - Sama_0809 0.36 -0.1 993,798 - Sama_0809 0.36 +1.0 993,798 - Sama_0809 0.36 -0.4 993,806 + Sama_0809 0.37 -0.5 993,806 + Sama_0809 0.37 -1.0 993,807 - Sama_0809 0.37 -0.9 993,807 - Sama_0809 0.37 +0.7 993,819 + Sama_0809 0.38 -0.4 993,820 - Sama_0809 0.38 -0.0 993,823 - Sama_0809 0.38 -1.5 993,926 + Sama_0809 0.46 +0.5 993,926 + Sama_0809 0.46 -0.0 993,946 - Sama_0809 0.48 -0.3 994,046 + Sama_0809 0.56 -0.5 994,046 + Sama_0809 0.56 +0.3 994,046 + Sama_0809 0.56 +0.4 994,047 - Sama_0809 0.56 +0.4
Or see this region's nucleotide sequence