Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0511 and Sama_0512 are separated by 54 nucleotides Sama_0512 and Sama_0513 are separated by 202 nucleotides
Sama_0511: Sama_0511 - alkyl sulfatase (RefSeq), at 626,443 to 628,404
_0511
Sama_0512: Sama_0512 - ATP-dependent RNA helicase DeaD (RefSeq), at 628,459 to 630,372
_0512
Sama_0513: Sama_0513 - peptidase M28 (RefSeq), at 630,575 to 631,600
_0513
Position (kb) 628
629
630
631 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 627.492 kb on + strand, within Sama_0511 at 627.492 kb on + strand, within Sama_0511 at 627.492 kb on + strand, within Sama_0511 at 627.492 kb on + strand, within Sama_0511 at 627.493 kb on - strand, within Sama_0511 at 627.493 kb on - strand, within Sama_0511 at 627.493 kb on - strand, within Sama_0511 at 627.493 kb on - strand, within Sama_0511 at 627.493 kb on - strand, within Sama_0511 at 627.521 kb on - strand, within Sama_0511 at 627.540 kb on + strand, within Sama_0511 at 627.540 kb on + strand, within Sama_0511 at 627.545 kb on - strand, within Sama_0511 at 627.589 kb on + strand, within Sama_0511 at 627.590 kb on - strand, within Sama_0511 at 627.619 kb on - strand, within Sama_0511 at 627.619 kb on - strand, within Sama_0511 at 627.619 kb on - strand, within Sama_0511 at 627.642 kb on + strand, within Sama_0511 at 627.642 kb on + strand, within Sama_0511 at 627.642 kb on + strand, within Sama_0511 at 627.643 kb on - strand, within Sama_0511 at 627.643 kb on - strand, within Sama_0511 at 627.651 kb on + strand, within Sama_0511 at 627.651 kb on + strand, within Sama_0511 at 627.661 kb on + strand, within Sama_0511 at 627.664 kb on + strand, within Sama_0511 at 627.664 kb on + strand, within Sama_0511 at 627.665 kb on - strand, within Sama_0511 at 627.665 kb on - strand, within Sama_0511 at 627.674 kb on + strand, within Sama_0511 at 627.674 kb on + strand, within Sama_0511 at 627.674 kb on + strand, within Sama_0511 at 627.675 kb on - strand, within Sama_0511 at 627.675 kb on - strand, within Sama_0511 at 627.706 kb on + strand, within Sama_0511 at 627.706 kb on + strand, within Sama_0511 at 627.706 kb on + strand, within Sama_0511 at 627.706 kb on + strand, within Sama_0511 at 627.706 kb on + strand, within Sama_0511 at 627.706 kb on + strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.707 kb on - strand, within Sama_0511 at 627.718 kb on + strand, within Sama_0511 at 627.718 kb on + strand, within Sama_0511 at 627.718 kb on + strand, within Sama_0511 at 627.745 kb on - strand, within Sama_0511 at 627.775 kb on + strand, within Sama_0511 at 627.784 kb on + strand, within Sama_0511 at 627.784 kb on + strand, within Sama_0511 at 627.784 kb on + strand, within Sama_0511 at 627.785 kb on - strand, within Sama_0511 at 627.785 kb on - strand, within Sama_0511 at 627.785 kb on - strand, within Sama_0511 at 627.878 kb on + strand, within Sama_0511 at 627.878 kb on + strand, within Sama_0511 at 627.878 kb on + strand, within Sama_0511 at 627.878 kb on + strand, within Sama_0511 at 627.924 kb on + strand, within Sama_0511 at 627.924 kb on + strand, within Sama_0511 at 627.924 kb on + strand, within Sama_0511 at 628.085 kb on - strand, within Sama_0511 at 628.085 kb on - strand, within Sama_0511 at 628.122 kb on + strand, within Sama_0511 at 628.122 kb on + strand, within Sama_0511 at 628.123 kb on - strand, within Sama_0511 at 628.123 kb on - strand, within Sama_0511 at 628.123 kb on - strand, within Sama_0511 at 628.123 kb on - strand, within Sama_0511 at 628.123 kb on - strand, within Sama_0511 at 628.201 kb on + strand, within Sama_0511 at 628.248 kb on + strand at 628.248 kb on + strand at 628.249 kb on - strand at 628.266 kb on + strand at 628.267 kb on - strand at 628.267 kb on - strand at 628.317 kb on - strand at 628.323 kb on + strand at 628.359 kb on + strand at 628.368 kb on + strand at 628.386 kb on + strand at 628.386 kb on + strand at 628.386 kb on + strand at 628.402 kb on + strand at 628.402 kb on + strand at 628.402 kb on + strand at 628.403 kb on - strand at 628.403 kb on - strand at 628.403 kb on - strand at 628.421 kb on - strand at 628.451 kb on - strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.611 kb on + strand at 628.611 kb on + strand at 628.611 kb on + strand at 628.612 kb on - strand at 628.612 kb on - strand at 628.612 kb on - strand at 628.612 kb on - strand at 628.672 kb on + strand, within Sama_0512 at 628.672 kb on + strand, within Sama_0512 at 628.672 kb on + strand, within Sama_0512 at 628.672 kb on + strand, within Sama_0512 at 628.672 kb on + strand, within Sama_0512 at 628.672 kb on + strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.673 kb on - strand, within Sama_0512 at 628.702 kb on + strand, within Sama_0512 at 628.703 kb on - strand, within Sama_0512 at 628.703 kb on - strand, within Sama_0512 at 628.730 kb on - strand, within Sama_0512 at 628.769 kb on - strand, within Sama_0512 at 628.769 kb on - strand, within Sama_0512 at 628.778 kb on + strand, within Sama_0512 at 628.799 kb on + strand, within Sama_0512 at 628.800 kb on - strand, within Sama_0512 at 628.886 kb on + strand, within Sama_0512 at 628.886 kb on + strand, within Sama_0512 at 628.887 kb on - strand, within Sama_0512 at 629.121 kb on + strand, within Sama_0512 at 629.167 kb on - strand, within Sama_0512 at 629.271 kb on + strand, within Sama_0512 at 629.272 kb on - strand, within Sama_0512 at 629.415 kb on - strand, within Sama_0512 at 629.565 kb on - strand, within Sama_0512 at 629.565 kb on - strand, within Sama_0512 at 629.613 kb on + strand, within Sama_0512 at 629.631 kb on + strand, within Sama_0512 at 629.663 kb on - strand, within Sama_0512 at 629.989 kb on + strand, within Sama_0512 at 629.990 kb on - strand, within Sama_0512 at 630.026 kb on + strand, within Sama_0512 at 630.026 kb on + strand, within Sama_0512 at 630.026 kb on + strand, within Sama_0512 at 630.027 kb on - strand, within Sama_0512 at 630.027 kb on - strand, within Sama_0512 at 630.044 kb on + strand, within Sama_0512 at 630.045 kb on - strand, within Sama_0512 at 630.045 kb on - strand, within Sama_0512 at 630.045 kb on - strand, within Sama_0512 at 630.045 kb on - strand, within Sama_0512 at 630.048 kb on + strand, within Sama_0512 at 630.049 kb on - strand, within Sama_0512 at 630.049 kb on - strand, within Sama_0512 at 630.055 kb on + strand, within Sama_0512 at 630.056 kb on - strand, within Sama_0512 at 630.056 kb on - strand, within Sama_0512 at 630.109 kb on + strand, within Sama_0512 at 630.214 kb on - strand at 630.385 kb on - strand at 630.416 kb on + strand at 630.614 kb on + strand at 630.614 kb on + strand at 630.615 kb on - strand at 630.621 kb on + strand at 630.622 kb on - strand at 630.622 kb on - strand at 630.622 kb on - strand at 630.623 kb on + strand at 630.633 kb on - strand at 630.633 kb on - strand at 630.633 kb on - strand at 630.633 kb on - strand at 630.633 kb on - strand at 630.674 kb on - strand at 630.691 kb on - strand, within Sama_0513 at 630.691 kb on - strand, within Sama_0513 at 630.717 kb on + strand, within Sama_0513 at 630.739 kb on + strand, within Sama_0513 at 630.751 kb on - strand, within Sama_0513 at 630.771 kb on + strand, within Sama_0513 at 630.771 kb on + strand, within Sama_0513 at 630.772 kb on - strand, within Sama_0513 at 630.772 kb on - strand, within Sama_0513 at 630.772 kb on - strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.897 kb on + strand, within Sama_0513 at 630.898 kb on - strand, within Sama_0513 at 630.906 kb on + strand, within Sama_0513 at 630.906 kb on + strand, within Sama_0513 at 630.907 kb on - strand, within Sama_0513 at 630.932 kb on - strand, within Sama_0513 at 630.959 kb on + strand, within Sama_0513 at 630.959 kb on + strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 630.960 kb on - strand, within Sama_0513 at 631.003 kb on - strand, within Sama_0513 at 631.003 kb on - strand, within Sama_0513 at 631.171 kb on - strand, within Sama_0513 at 631.181 kb on + strand, within Sama_0513 at 631.181 kb on + strand, within Sama_0513 at 631.181 kb on + strand, within Sama_0513 at 631.181 kb on + strand, within Sama_0513 at 631.182 kb on - strand, within Sama_0513 at 631.182 kb on - strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.226 kb on + strand, within Sama_0513 at 631.227 kb on - strand, within Sama_0513 at 631.227 kb on - strand, within Sama_0513
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 627,492 + Sama_0511 0.53 +1.6 627,492 + Sama_0511 0.53 -0.3 627,492 + Sama_0511 0.53 +0.3 627,492 + Sama_0511 0.53 -1.1 627,493 - Sama_0511 0.54 -0.0 627,493 - Sama_0511 0.54 -0.2 627,493 - Sama_0511 0.54 -1.3 627,493 - Sama_0511 0.54 -0.5 627,493 - Sama_0511 0.54 -0.1 627,521 - Sama_0511 0.55 +0.1 627,540 + Sama_0511 0.56 -0.9 627,540 + Sama_0511 0.56 -0.2 627,545 - Sama_0511 0.56 +1.0 627,589 + Sama_0511 0.58 +1.9 627,590 - Sama_0511 0.58 -1.0 627,619 - Sama_0511 0.60 -0.4 627,619 - Sama_0511 0.60 +0.9 627,619 - Sama_0511 0.60 +0.7 627,642 + Sama_0511 0.61 +0.9 627,642 + Sama_0511 0.61 -0.2 627,642 + Sama_0511 0.61 -1.2 627,643 - Sama_0511 0.61 -0.7 627,643 - Sama_0511 0.61 -0.2 627,651 + Sama_0511 0.62 +0.1 627,651 + Sama_0511 0.62 +0.2 627,661 + Sama_0511 0.62 -0.5 627,664 + Sama_0511 0.62 -0.3 627,664 + Sama_0511 0.62 -0.6 627,665 - Sama_0511 0.62 +0.9 627,665 - Sama_0511 0.62 +1.5 627,674 + Sama_0511 0.63 +1.3 627,674 + Sama_0511 0.63 +0.3 627,674 + Sama_0511 0.63 +1.6 627,675 - Sama_0511 0.63 -0.1 627,675 - Sama_0511 0.63 +0.6 627,706 + Sama_0511 0.64 +0.7 627,706 + Sama_0511 0.64 +0.2 627,706 + Sama_0511 0.64 +0.4 627,706 + Sama_0511 0.64 -0.1 627,706 + Sama_0511 0.64 -1.3 627,706 + Sama_0511 0.64 -0.1 627,707 - Sama_0511 0.64 +1.0 627,707 - Sama_0511 0.64 -0.5 627,707 - Sama_0511 0.64 -0.5 627,707 - Sama_0511 0.64 +0.2 627,707 - Sama_0511 0.64 +1.4 627,707 - Sama_0511 0.64 -0.1 627,707 - Sama_0511 0.64 +0.6 627,707 - Sama_0511 0.64 -0.6 627,718 + Sama_0511 0.65 +0.6 627,718 + Sama_0511 0.65 -0.4 627,718 + Sama_0511 0.65 +1.7 627,745 - Sama_0511 0.66 -0.2 627,775 + Sama_0511 0.68 -0.8 627,784 + Sama_0511 0.68 +0.8 627,784 + Sama_0511 0.68 +0.6 627,784 + Sama_0511 0.68 -1.2 627,785 - Sama_0511 0.68 -1.4 627,785 - Sama_0511 0.68 -0.6 627,785 - Sama_0511 0.68 -1.8 627,878 + Sama_0511 0.73 +0.4 627,878 + Sama_0511 0.73 +1.2 627,878 + Sama_0511 0.73 +1.2 627,878 + Sama_0511 0.73 -2.1 627,924 + Sama_0511 0.75 +1.4 627,924 + Sama_0511 0.75 -0.0 627,924 + Sama_0511 0.75 -0.2 628,085 - Sama_0511 0.84 +0.7 628,085 - Sama_0511 0.84 +1.2 628,122 + Sama_0511 0.86 +0.6 628,122 + Sama_0511 0.86 -0.1 628,123 - Sama_0511 0.86 -0.9 628,123 - Sama_0511 0.86 -1.9 628,123 - Sama_0511 0.86 -1.3 628,123 - Sama_0511 0.86 +0.1 628,123 - Sama_0511 0.86 +0.4 628,201 + Sama_0511 0.90 -0.2 628,248 + -2.0 628,248 + +0.0 628,249 - -0.4 628,266 + +0.2 628,267 - -1.3 628,267 - -0.0 628,317 - -0.7 628,323 + +0.5 628,359 + +1.0 628,368 + +0.6 628,386 + -0.0 628,386 + -1.3 628,386 + -0.2 628,402 + -0.9 628,402 + +0.7 628,402 + -0.3 628,403 - +0.8 628,403 - -0.7 628,403 - -1.4 628,421 - -0.6 628,451 - -0.2 628,575 + -2.1 628,575 + -1.1 628,575 + +1.0 628,576 - -0.2 628,576 - -0.3 628,611 + -1.2 628,611 + -1.4 628,611 + -1.1 628,612 - -0.7 628,612 - -1.3 628,612 - -0.0 628,612 - -1.0 628,672 + Sama_0512 0.11 -2.1 628,672 + Sama_0512 0.11 +0.1 628,672 + Sama_0512 0.11 -1.1 628,672 + Sama_0512 0.11 +1.0 628,672 + Sama_0512 0.11 -0.3 628,672 + Sama_0512 0.11 -0.5 628,673 - Sama_0512 0.11 -1.3 628,673 - Sama_0512 0.11 -0.6 628,673 - Sama_0512 0.11 -1.0 628,673 - Sama_0512 0.11 -0.4 628,673 - Sama_0512 0.11 -0.5 628,673 - Sama_0512 0.11 -0.2 628,673 - Sama_0512 0.11 -0.9 628,673 - Sama_0512 0.11 -0.9 628,702 + Sama_0512 0.13 -0.9 628,703 - Sama_0512 0.13 +0.8 628,703 - Sama_0512 0.13 -0.6 628,730 - Sama_0512 0.14 -0.8 628,769 - Sama_0512 0.16 -0.6 628,769 - Sama_0512 0.16 -1.8 628,778 + Sama_0512 0.17 +1.2 628,799 + Sama_0512 0.18 +0.3 628,800 - Sama_0512 0.18 -1.1 628,886 + Sama_0512 0.22 +0.9 628,886 + Sama_0512 0.22 -0.8 628,887 - Sama_0512 0.22 -0.8 629,121 + Sama_0512 0.35 -1.2 629,167 - Sama_0512 0.37 -1.6 629,271 + Sama_0512 0.42 -0.9 629,272 - Sama_0512 0.42 -1.0 629,415 - Sama_0512 0.50 -1.2 629,565 - Sama_0512 0.58 -0.5 629,565 - Sama_0512 0.58 -1.4 629,613 + Sama_0512 0.60 +0.0 629,631 + Sama_0512 0.61 -0.2 629,663 - Sama_0512 0.63 -2.8 629,989 + Sama_0512 0.80 -1.6 629,990 - Sama_0512 0.80 -2.8 630,026 + Sama_0512 0.82 -2.4 630,026 + Sama_0512 0.82 -1.2 630,026 + Sama_0512 0.82 -0.9 630,027 - Sama_0512 0.82 -0.4 630,027 - Sama_0512 0.82 +0.8 630,044 + Sama_0512 0.83 -1.6 630,045 - Sama_0512 0.83 -2.1 630,045 - Sama_0512 0.83 -0.9 630,045 - Sama_0512 0.83 -0.6 630,045 - Sama_0512 0.83 -0.2 630,048 + Sama_0512 0.83 -0.2 630,049 - Sama_0512 0.83 -1.3 630,049 - Sama_0512 0.83 -2.2 630,055 + Sama_0512 0.83 +0.4 630,056 - Sama_0512 0.83 -0.2 630,056 - Sama_0512 0.83 -0.9 630,109 + Sama_0512 0.86 -0.8 630,214 - +0.4 630,385 - -1.8 630,416 + -0.6 630,614 + -0.2 630,614 + -0.6 630,615 - +1.1 630,621 + -0.4 630,622 - +1.8 630,622 - -0.9 630,622 - +0.1 630,623 + -0.1 630,633 - -0.8 630,633 - -0.5 630,633 - +0.8 630,633 - +0.3 630,633 - +1.0 630,674 - +0.3 630,691 - Sama_0513 0.11 -1.1 630,691 - Sama_0513 0.11 -0.4 630,717 + Sama_0513 0.14 +0.1 630,739 + Sama_0513 0.16 -0.5 630,751 - Sama_0513 0.17 -0.8 630,771 + Sama_0513 0.19 -0.7 630,771 + Sama_0513 0.19 +0.1 630,772 - Sama_0513 0.19 -2.0 630,772 - Sama_0513 0.19 -0.6 630,772 - Sama_0513 0.19 +1.4 630,897 + Sama_0513 0.31 -1.9 630,897 + Sama_0513 0.31 -0.4 630,897 + Sama_0513 0.31 -0.3 630,897 + Sama_0513 0.31 -0.6 630,897 + Sama_0513 0.31 -0.4 630,897 + Sama_0513 0.31 -2.2 630,898 - Sama_0513 0.31 +0.9 630,906 + Sama_0513 0.32 +0.1 630,906 + Sama_0513 0.32 -0.3 630,907 - Sama_0513 0.32 +0.5 630,932 - Sama_0513 0.35 -0.5 630,959 + Sama_0513 0.37 -1.7 630,959 + Sama_0513 0.37 +0.4 630,960 - Sama_0513 0.38 -0.0 630,960 - Sama_0513 0.38 -0.4 630,960 - Sama_0513 0.38 +0.1 630,960 - Sama_0513 0.38 -0.0 630,960 - Sama_0513 0.38 +0.0 631,003 - Sama_0513 0.42 -1.7 631,003 - Sama_0513 0.42 -0.5 631,171 - Sama_0513 0.58 +0.4 631,181 + Sama_0513 0.59 -0.7 631,181 + Sama_0513 0.59 -0.6 631,181 + Sama_0513 0.59 -1.6 631,181 + Sama_0513 0.59 -0.8 631,182 - Sama_0513 0.59 -0.0 631,182 - Sama_0513 0.59 -0.4 631,226 + Sama_0513 0.63 -0.2 631,226 + Sama_0513 0.63 +0.2 631,226 + Sama_0513 0.63 +0.1 631,226 + Sama_0513 0.63 +0.1 631,226 + Sama_0513 0.63 -0.5 631,226 + Sama_0513 0.63 -1.0 631,226 + Sama_0513 0.63 -2.0 631,226 + Sama_0513 0.63 +1.0 631,227 - Sama_0513 0.64 +0.8 631,227 - Sama_0513 0.64 -0.6
Or see this region's nucleotide sequence