Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0439 and hslU are separated by 162 nucleotides hslU and Sama_0441 are separated by 9 nucleotides Sama_0441 and Sama_0442 are separated by 205 nucleotides
Sama_0439: Sama_0439 - subtilisin-like serine protease-like protein (RefSeq), at 539,199 to 542,654
_0439
Sama_0440: hslU - ATP-dependent protease ATP-binding subunit HslU (RefSeq), at 542,817 to 544,142
hslU
Sama_0441: Sama_0441 - ATP-dependent protease peptidase subunit (RefSeq), at 544,152 to 544,676
_0441
Sama_0442: Sama_0442 - sporulation related (RefSeq), at 544,882 to 545,439
_0442
Position (kb) 542
543
544
545 Strain fitness (log2 ratio) -2
-1
0
1
2 at 541.850 kb on + strand, within Sama_0439 at 541.850 kb on + strand, within Sama_0439 at 541.850 kb on + strand, within Sama_0439 at 541.851 kb on - strand, within Sama_0439 at 541.851 kb on - strand, within Sama_0439 at 541.851 kb on - strand, within Sama_0439 at 541.851 kb on - strand, within Sama_0439 at 541.851 kb on - strand, within Sama_0439 at 541.851 kb on - strand, within Sama_0439 at 541.853 kb on + strand, within Sama_0439 at 541.854 kb on - strand, within Sama_0439 at 541.913 kb on + strand, within Sama_0439 at 541.914 kb on - strand, within Sama_0439 at 541.930 kb on + strand, within Sama_0439 at 541.930 kb on + strand, within Sama_0439 at 541.930 kb on + strand, within Sama_0439 at 541.931 kb on - strand, within Sama_0439 at 542.018 kb on + strand, within Sama_0439 at 542.028 kb on + strand, within Sama_0439 at 542.028 kb on + strand, within Sama_0439 at 542.029 kb on - strand, within Sama_0439 at 542.029 kb on - strand, within Sama_0439 at 542.029 kb on - strand, within Sama_0439 at 542.117 kb on + strand, within Sama_0439 at 542.128 kb on + strand, within Sama_0439 at 542.128 kb on + strand, within Sama_0439 at 542.298 kb on + strand, within Sama_0439 at 542.298 kb on + strand, within Sama_0439 at 542.298 kb on + strand, within Sama_0439 at 542.298 kb on + strand, within Sama_0439 at 542.298 kb on + strand, within Sama_0439 at 542.298 kb on + strand, within Sama_0439 at 542.298 kb on + strand, within Sama_0439 at 542.299 kb on - strand, within Sama_0439 at 542.299 kb on - strand, within Sama_0439 at 542.299 kb on - strand, within Sama_0439 at 542.316 kb on + strand at 542.316 kb on + strand at 542.317 kb on - strand at 542.427 kb on - strand at 542.434 kb on + strand at 542.434 kb on + strand at 542.434 kb on + strand at 542.435 kb on - strand at 542.435 kb on - strand at 542.435 kb on - strand at 542.435 kb on - strand at 542.435 kb on - strand at 542.484 kb on + strand at 542.485 kb on - strand at 542.568 kb on + strand at 542.648 kb on + strand at 542.648 kb on + strand at 542.648 kb on + strand at 542.648 kb on + strand at 542.648 kb on + strand at 542.649 kb on - strand at 542.649 kb on - strand at 542.652 kb on + strand at 542.652 kb on + strand at 542.652 kb on + strand at 542.652 kb on + strand at 542.652 kb on + strand at 542.652 kb on + strand at 542.653 kb on - strand at 542.653 kb on - strand at 542.653 kb on - strand at 542.653 kb on - strand at 542.653 kb on - strand at 542.653 kb on - strand at 542.721 kb on - strand at 542.721 kb on - strand at 542.768 kb on + strand at 542.769 kb on - strand at 542.769 kb on - strand at 542.774 kb on + strand at 542.774 kb on + strand at 542.775 kb on - strand at 542.785 kb on + strand at 542.785 kb on + strand at 542.785 kb on + strand at 542.786 kb on - strand at 542.786 kb on - strand at 542.786 kb on - strand at 542.786 kb on - strand at 542.786 kb on - strand at 542.788 kb on + strand at 542.788 kb on + strand at 542.795 kb on + strand at 542.795 kb on + strand at 542.818 kb on + strand at 542.818 kb on + strand at 542.818 kb on + strand at 542.818 kb on + strand at 542.819 kb on - strand at 542.826 kb on - strand at 542.858 kb on + strand at 542.889 kb on + strand at 542.889 kb on + strand at 542.889 kb on + strand at 542.890 kb on - strand at 542.890 kb on - strand at 542.890 kb on - strand at 542.890 kb on - strand at 542.890 kb on - strand at 543.085 kb on + strand, within hslU at 543.086 kb on - strand, within hslU at 543.123 kb on - strand, within hslU at 543.246 kb on - strand, within hslU at 543.802 kb on - strand, within hslU at 543.871 kb on + strand, within hslU at 543.872 kb on - strand, within hslU at 543.956 kb on + strand, within hslU at 543.987 kb on - strand, within hslU at 544.094 kb on + strand at 544.157 kb on - strand at 544.157 kb on - strand at 544.203 kb on - strand at 544.338 kb on + strand, within Sama_0441 at 544.339 kb on - strand, within Sama_0441 at 544.339 kb on - strand, within Sama_0441 at 544.339 kb on - strand, within Sama_0441 at 544.549 kb on - strand, within Sama_0441 at 544.549 kb on - strand, within Sama_0441 at 544.562 kb on - strand, within Sama_0441 at 544.667 kb on + strand at 544.667 kb on + strand at 544.668 kb on - strand at 544.668 kb on - strand at 544.670 kb on + strand at 544.671 kb on - strand at 544.692 kb on - strand at 544.692 kb on - strand at 544.706 kb on - strand at 544.730 kb on + strand at 544.730 kb on + strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.731 kb on - strand at 544.732 kb on + strand at 544.732 kb on + strand at 544.733 kb on - strand at 544.733 kb on - strand at 544.733 kb on - strand at 544.733 kb on - strand at 544.762 kb on + strand at 544.763 kb on - strand at 544.792 kb on + strand at 544.792 kb on + strand at 544.793 kb on - strand at 544.793 kb on - strand at 544.793 kb on - strand at 544.793 kb on - strand at 544.869 kb on + strand at 544.869 kb on + strand at 544.869 kb on + strand at 544.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 541,850 + Sama_0439 0.77 +0.6 541,850 + Sama_0439 0.77 -0.7 541,850 + Sama_0439 0.77 -0.2 541,851 - Sama_0439 0.77 -0.3 541,851 - Sama_0439 0.77 -1.6 541,851 - Sama_0439 0.77 -1.1 541,851 - Sama_0439 0.77 +0.4 541,851 - Sama_0439 0.77 -0.9 541,851 - Sama_0439 0.77 -2.3 541,853 + Sama_0439 0.77 -0.1 541,854 - Sama_0439 0.77 -0.5 541,913 + Sama_0439 0.79 -1.4 541,914 - Sama_0439 0.79 -2.7 541,930 + Sama_0439 0.79 -2.0 541,930 + Sama_0439 0.79 +0.1 541,930 + Sama_0439 0.79 -0.2 541,931 - Sama_0439 0.79 +0.4 542,018 + Sama_0439 0.82 +0.4 542,028 + Sama_0439 0.82 -0.2 542,028 + Sama_0439 0.82 +0.7 542,029 - Sama_0439 0.82 -1.2 542,029 - Sama_0439 0.82 +0.8 542,029 - Sama_0439 0.82 +0.3 542,117 + Sama_0439 0.84 -0.7 542,128 + Sama_0439 0.85 +0.3 542,128 + Sama_0439 0.85 -0.2 542,298 + Sama_0439 0.90 +0.8 542,298 + Sama_0439 0.90 +0.3 542,298 + Sama_0439 0.90 +0.7 542,298 + Sama_0439 0.90 +0.0 542,298 + Sama_0439 0.90 -0.1 542,298 + Sama_0439 0.90 +0.5 542,298 + Sama_0439 0.90 -0.4 542,299 - Sama_0439 0.90 +1.0 542,299 - Sama_0439 0.90 +0.5 542,299 - Sama_0439 0.90 -0.0 542,316 + +1.1 542,316 + +0.4 542,317 - +0.6 542,427 - -0.9 542,434 + -0.8 542,434 + -1.2 542,434 + -0.4 542,435 - -0.9 542,435 - +0.4 542,435 - -0.9 542,435 - +0.7 542,435 - +1.1 542,484 + +0.5 542,485 - -0.7 542,568 + -0.6 542,648 + -0.3 542,648 + +1.4 542,648 + +0.4 542,648 + -0.2 542,648 + -1.1 542,649 - +0.0 542,649 - +0.3 542,652 + -0.3 542,652 + +1.6 542,652 + -0.8 542,652 + +0.3 542,652 + -0.5 542,652 + +0.2 542,653 - +0.5 542,653 - +0.0 542,653 - +0.7 542,653 - -0.4 542,653 - -0.1 542,653 - -0.0 542,721 - -0.6 542,721 - +1.4 542,768 + +0.5 542,769 - +1.2 542,769 - -1.4 542,774 + +1.4 542,774 + +0.2 542,775 - -1.0 542,785 + +0.4 542,785 + +0.4 542,785 + -1.3 542,786 - -0.4 542,786 - +0.7 542,786 - -0.3 542,786 - +0.4 542,786 - -0.3 542,788 + +0.4 542,788 + +0.2 542,795 + +1.4 542,795 + -0.1 542,818 + +0.3 542,818 + -0.2 542,818 + +0.2 542,818 + -0.0 542,819 - +1.0 542,826 - +1.7 542,858 + +0.4 542,889 + -0.2 542,889 + +0.1 542,889 + -0.0 542,890 - +0.1 542,890 - +0.2 542,890 - +1.0 542,890 - +1.4 542,890 - -0.4 543,085 + hslU Sama_0440 0.20 +1.7 543,086 - hslU Sama_0440 0.20 -0.9 543,123 - hslU Sama_0440 0.23 +2.2 543,246 - hslU Sama_0440 0.32 +0.9 543,802 - hslU Sama_0440 0.74 +2.3 543,871 + hslU Sama_0440 0.79 +1.6 543,872 - hslU Sama_0440 0.80 -1.6 543,956 + hslU Sama_0440 0.86 +0.4 543,987 - hslU Sama_0440 0.88 +0.9 544,094 + -2.0 544,157 - +0.5 544,157 - +0.4 544,203 - +0.7 544,338 + Sama_0441 0.35 -0.4 544,339 - Sama_0441 0.36 +0.5 544,339 - Sama_0441 0.36 +0.4 544,339 - Sama_0441 0.36 +1.4 544,549 - Sama_0441 0.76 +1.4 544,549 - Sama_0441 0.76 +1.3 544,562 - Sama_0441 0.78 +1.5 544,667 + +0.3 544,667 + -0.0 544,668 - +0.2 544,668 - +0.6 544,670 + +1.2 544,671 - +0.8 544,692 - +1.0 544,692 - -0.0 544,706 - -0.2 544,730 + -0.7 544,730 + -0.2 544,731 - +0.6 544,731 - +0.3 544,731 - +0.6 544,731 - -1.1 544,731 - +0.5 544,731 - -1.1 544,731 - +0.7 544,731 - -1.6 544,731 - +0.4 544,731 - +0.4 544,731 - -0.3 544,731 - +0.3 544,731 - -0.5 544,731 - -0.5 544,731 - +0.7 544,731 - -0.1 544,731 - -1.0 544,731 - +1.1 544,731 - +2.3 544,731 - +0.3 544,731 - +0.4 544,731 - +0.7 544,732 + +0.4 544,732 + -0.3 544,733 - +0.9 544,733 - +0.5 544,733 - -1.4 544,733 - -0.4 544,762 + -0.2 544,763 - -1.5 544,792 + -0.9 544,792 + -1.3 544,793 - -1.4 544,793 - -1.1 544,793 - -2.6 544,793 - -1.9 544,869 + +0.8 544,869 + -1.6 544,869 + -1.4 544,870 - -1.0
Or see this region's nucleotide sequence