Strain Fitness in Shewanella amazonensis SB2B around Sama_0250

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0248 and Sama_0249 are separated by 14 nucleotidesSama_0249 and Sama_0250 overlap by 4 nucleotidesSama_0250 and Sama_0251 overlap by 4 nucleotides Sama_0248: Sama_0248 - cytochrome c-type biogenesis protein CcmF (RefSeq), at 271,790 to 273,766 _0248 Sama_0249: Sama_0249 - thiol:disulfide interchange protein DsbE (RefSeq), at 273,781 to 274,368 _0249 Sama_0250: Sama_0250 - cytochrome c-type biogenesis protein CcmH (RefSeq), at 274,365 to 274,868 _0250 Sama_0251: Sama_0251 - thioredoxin, putative (RefSeq), at 274,865 to 275,446 _0251 Position (kb) 274 275Strain fitness (log2 ratio) -2 -1 0 1 2at 273.379 kb on + strand, within Sama_0248at 273.380 kb on - strand, within Sama_0248at 273.380 kb on - strand, within Sama_0248at 273.380 kb on - strand, within Sama_0248at 273.411 kb on + strand, within Sama_0248at 273.411 kb on + strand, within Sama_0248at 273.412 kb on - strand, within Sama_0248at 273.423 kb on - strand, within Sama_0248at 273.423 kb on - strand, within Sama_0248at 273.423 kb on - strand, within Sama_0248at 273.452 kb on + strand, within Sama_0248at 273.452 kb on + strand, within Sama_0248at 273.452 kb on + strand, within Sama_0248at 273.452 kb on + strand, within Sama_0248at 273.452 kb on + strand, within Sama_0248at 273.452 kb on + strand, within Sama_0248at 273.453 kb on - strand, within Sama_0248at 273.453 kb on - strand, within Sama_0248at 273.453 kb on - strand, within Sama_0248at 273.453 kb on - strand, within Sama_0248at 273.453 kb on - strand, within Sama_0248at 273.455 kb on - strand, within Sama_0248at 273.501 kb on - strand, within Sama_0248at 273.563 kb on + strand, within Sama_0248at 273.563 kb on + strand, within Sama_0248at 273.564 kb on - strand, within Sama_0248at 273.564 kb on - strand, within Sama_0248at 273.583 kb on + strandat 273.584 kb on - strandat 273.584 kb on - strandat 273.617 kb on + strandat 273.617 kb on + strandat 273.618 kb on - strandat 273.618 kb on - strandat 273.658 kb on + strandat 273.658 kb on + strandat 273.699 kb on - strandat 273.730 kb on + strandat 273.730 kb on + strandat 273.730 kb on + strandat 273.731 kb on - strandat 273.742 kb on + strandat 273.749 kb on - strandat 273.757 kb on + strandat 273.757 kb on + strandat 273.757 kb on + strandat 273.798 kb on - strandat 273.813 kb on - strandat 273.833 kb on + strandat 273.833 kb on + strandat 273.842 kb on - strand, within Sama_0249at 273.891 kb on + strand, within Sama_0249at 273.892 kb on - strand, within Sama_0249at 273.897 kb on + strand, within Sama_0249at 273.914 kb on + strand, within Sama_0249at 274.011 kb on + strand, within Sama_0249at 274.012 kb on - strand, within Sama_0249at 274.012 kb on - strand, within Sama_0249at 274.015 kb on + strand, within Sama_0249at 274.015 kb on + strand, within Sama_0249at 274.015 kb on + strand, within Sama_0249at 274.015 kb on + strand, within Sama_0249at 274.016 kb on - strand, within Sama_0249at 274.062 kb on + strand, within Sama_0249at 274.062 kb on + strand, within Sama_0249at 274.062 kb on + strand, within Sama_0249at 274.066 kb on + strand, within Sama_0249at 274.067 kb on - strand, within Sama_0249at 274.071 kb on + strand, within Sama_0249at 274.078 kb on + strand, within Sama_0249at 274.101 kb on + strand, within Sama_0249at 274.102 kb on - strand, within Sama_0249at 274.132 kb on + strand, within Sama_0249at 274.132 kb on + strand, within Sama_0249at 274.133 kb on - strand, within Sama_0249at 274.133 kb on - strand, within Sama_0249at 274.133 kb on - strand, within Sama_0249at 274.133 kb on - strand, within Sama_0249at 274.133 kb on - strand, within Sama_0249at 274.133 kb on - strand, within Sama_0249at 274.133 kb on - strand, within Sama_0249at 274.136 kb on + strand, within Sama_0249at 274.136 kb on + strand, within Sama_0249at 274.136 kb on + strand, within Sama_0249at 274.136 kb on + strand, within Sama_0249at 274.136 kb on + strand, within Sama_0249at 274.136 kb on + strand, within Sama_0249at 274.136 kb on + strand, within Sama_0249at 274.137 kb on - strand, within Sama_0249at 274.137 kb on - strand, within Sama_0249at 274.186 kb on + strand, within Sama_0249at 274.186 kb on + strand, within Sama_0249at 274.186 kb on + strand, within Sama_0249at 274.186 kb on + strand, within Sama_0249at 274.186 kb on + strand, within Sama_0249at 274.187 kb on - strand, within Sama_0249at 274.187 kb on - strand, within Sama_0249at 274.187 kb on - strand, within Sama_0249at 274.187 kb on - strand, within Sama_0249at 274.187 kb on - strand, within Sama_0249at 274.187 kb on - strand, within Sama_0249at 274.187 kb on - strand, within Sama_0249at 274.187 kb on - strand, within Sama_0249at 274.187 kb on - strand, within Sama_0249at 274.187 kb on - strand, within Sama_0249at 274.187 kb on - strand, within Sama_0249at 274.219 kb on - strand, within Sama_0249at 274.224 kb on + strand, within Sama_0249at 274.225 kb on - strand, within Sama_0249at 274.227 kb on + strand, within Sama_0249at 274.227 kb on + strand, within Sama_0249at 274.227 kb on + strand, within Sama_0249at 274.228 kb on - strand, within Sama_0249at 274.376 kb on - strandat 274.406 kb on + strandat 274.443 kb on + strand, within Sama_0250at 274.443 kb on + strand, within Sama_0250at 274.444 kb on - strand, within Sama_0250at 274.444 kb on - strand, within Sama_0250at 274.451 kb on + strand, within Sama_0250at 274.451 kb on + strand, within Sama_0250at 274.452 kb on - strand, within Sama_0250at 274.575 kb on + strand, within Sama_0250at 274.622 kb on + strand, within Sama_0250at 274.635 kb on + strand, within Sama_0250at 274.636 kb on - strand, within Sama_0250at 274.654 kb on - strand, within Sama_0250at 274.654 kb on - strand, within Sama_0250at 274.654 kb on - strand, within Sama_0250at 274.655 kb on + strand, within Sama_0250at 274.655 kb on + strand, within Sama_0250at 274.655 kb on + strand, within Sama_0250at 274.656 kb on - strand, within Sama_0250at 274.680 kb on + strand, within Sama_0250at 274.680 kb on + strand, within Sama_0250at 274.680 kb on + strand, within Sama_0250at 274.680 kb on + strand, within Sama_0250at 274.680 kb on + strand, within Sama_0250at 274.680 kb on + strand, within Sama_0250at 274.680 kb on + strand, within Sama_0250at 274.680 kb on + strand, within Sama_0250at 274.681 kb on - strand, within Sama_0250at 274.681 kb on - strand, within Sama_0250at 274.681 kb on - strand, within Sama_0250at 274.681 kb on - strand, within Sama_0250at 274.681 kb on - strand, within Sama_0250at 274.681 kb on - strand, within Sama_0250at 274.681 kb on - strand, within Sama_0250at 274.681 kb on - strand, within Sama_0250at 274.682 kb on + strand, within Sama_0250at 274.702 kb on + strand, within Sama_0250at 274.703 kb on - strand, within Sama_0250at 274.703 kb on - strand, within Sama_0250at 274.732 kb on + strand, within Sama_0250at 274.732 kb on + strand, within Sama_0250at 274.732 kb on + strand, within Sama_0250at 274.732 kb on + strand, within Sama_0250at 274.732 kb on + strand, within Sama_0250at 274.735 kb on + strand, within Sama_0250at 274.735 kb on + strand, within Sama_0250at 274.735 kb on + strand, within Sama_0250at 274.735 kb on + strand, within Sama_0250at 274.735 kb on + strand, within Sama_0250at 274.735 kb on + strand, within Sama_0250at 274.735 kb on + strand, within Sama_0250at 274.735 kb on + strand, within Sama_0250at 274.736 kb on - strand, within Sama_0250at 274.736 kb on - strand, within Sama_0250at 274.736 kb on - strand, within Sama_0250at 274.736 kb on - strand, within Sama_0250at 274.738 kb on + strand, within Sama_0250at 274.738 kb on + strand, within Sama_0250at 274.738 kb on + strand, within Sama_0250at 274.738 kb on + strand, within Sama_0250at 274.739 kb on - strand, within Sama_0250at 274.739 kb on - strand, within Sama_0250at 274.739 kb on - strand, within Sama_0250at 274.749 kb on - strand, within Sama_0250at 274.826 kb on + strandat 274.857 kb on - strandat 274.857 kb on - strandat 274.875 kb on + strandat 274.876 kb on - strandat 275.051 kb on + strand, within Sama_0251at 275.051 kb on + strand, within Sama_0251at 275.051 kb on + strand, within Sama_0251at 275.077 kb on + strand, within Sama_0251at 275.077 kb on + strand, within Sama_0251at 275.077 kb on + strand, within Sama_0251at 275.077 kb on + strand, within Sama_0251at 275.077 kb on + strand, within Sama_0251at 275.077 kb on + strand, within Sama_0251at 275.078 kb on - strand, within Sama_0251at 275.078 kb on - strand, within Sama_0251at 275.078 kb on - strand, within Sama_0251at 275.078 kb on - strand, within Sama_0251at 275.078 kb on - strand, within Sama_0251at 275.078 kb on - strand, within Sama_0251at 275.086 kb on + strand, within Sama_0251at 275.086 kb on + strand, within Sama_0251at 275.087 kb on - strand, within Sama_0251at 275.116 kb on - strand, within Sama_0251at 275.116 kb on - strand, within Sama_0251at 275.134 kb on + strand, within Sama_0251at 275.134 kb on + strand, within Sama_0251at 275.134 kb on + strand, within Sama_0251at 275.135 kb on - strand, within Sama_0251at 275.179 kb on + strand, within Sama_0251at 275.179 kb on + strand, within Sama_0251at 275.179 kb on + strand, within Sama_0251at 275.180 kb on - strand, within Sama_0251at 275.180 kb on - strand, within Sama_0251at 275.180 kb on - strand, within Sama_0251at 275.180 kb on - strand, within Sama_0251at 275.180 kb on - strand, within Sama_0251at 275.194 kb on + strand, within Sama_0251at 275.217 kb on + strand, within Sama_0251at 275.271 kb on + strand, within Sama_0251at 275.271 kb on + strand, within Sama_0251at 275.272 kb on - strand, within Sama_0251at 275.272 kb on - strand, within Sama_0251at 275.293 kb on + strand, within Sama_0251at 275.294 kb on - strand, within Sama_0251at 275.312 kb on - strand, within Sama_0251at 275.312 kb on - strand, within Sama_0251at 275.317 kb on + strand, within Sama_0251at 275.317 kb on + strand, within Sama_0251at 275.317 kb on + strand, within Sama_0251at 275.318 kb on - strand, within Sama_0251at 275.320 kb on + strand, within Sama_0251at 275.320 kb on + strand, within Sama_0251at 275.321 kb on - strand, within Sama_0251at 275.321 kb on - strand, within Sama_0251at 275.374 kb on + strand, within Sama_0251at 275.392 kb on + strandat 275.392 kb on + strandat 275.392 kb on + strandat 275.393 kb on - strandat 275.415 kb on + strandat 275.444 kb on + strandat 275.444 kb on + strandat 275.484 kb on + strandat 275.553 kb on - strandat 275.554 kb on + strandat 275.554 kb on + strandat 275.555 kb on - strandat 275.601 kb on + strandat 275.601 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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273,379 + Sama_0248 0.80 -1.9
273,380 - Sama_0248 0.80 -1.1
273,380 - Sama_0248 0.80 -2.5
273,380 - Sama_0248 0.80 -1.9
273,411 + Sama_0248 0.82 +1.5
273,411 + Sama_0248 0.82 -0.5
273,412 - Sama_0248 0.82 -1.3
273,423 - Sama_0248 0.83 -0.9
273,423 - Sama_0248 0.83 -0.9
273,423 - Sama_0248 0.83 +1.1
273,452 + Sama_0248 0.84 -2.0
273,452 + Sama_0248 0.84 -2.4
273,452 + Sama_0248 0.84 +0.2
273,452 + Sama_0248 0.84 -1.3
273,452 + Sama_0248 0.84 -1.1
273,452 + Sama_0248 0.84 +0.5
273,453 - Sama_0248 0.84 -1.5
273,453 - Sama_0248 0.84 -1.1
273,453 - Sama_0248 0.84 +0.5
273,453 - Sama_0248 0.84 -0.9
273,453 - Sama_0248 0.84 -0.9
273,455 - Sama_0248 0.84 +1.5
273,501 - Sama_0248 0.87 -0.1
273,563 + Sama_0248 0.90 -0.7
273,563 + Sama_0248 0.90 -1.5
273,564 - Sama_0248 0.90 +0.8
273,564 - Sama_0248 0.90 -1.3
273,583 + -1.1
273,584 - -1.1
273,584 - -1.9
273,617 + +0.9
273,617 + -1.9
273,618 - -0.5
273,618 - -0.5
273,658 + -1.2
273,658 + -1.7
273,699 - -0.8
273,730 + +0.1
273,730 + +0.1
273,730 + +0.2
273,731 - -1.1
273,742 + +0.0
273,749 - -1.5
273,757 + +1.3
273,757 + -0.5
273,757 + -0.6
273,798 - -1.5
273,813 - -1.5
273,833 + -2.2
273,833 + +0.1
273,842 - Sama_0249 0.10 -0.1
273,891 + Sama_0249 0.19 -1.5
273,892 - Sama_0249 0.19 +0.5
273,897 + Sama_0249 0.20 -2.5
273,914 + Sama_0249 0.23 -1.0
274,011 + Sama_0249 0.39 -1.5
274,012 - Sama_0249 0.39 -2.1
274,012 - Sama_0249 0.39 -0.1
274,015 + Sama_0249 0.40 -1.3
274,015 + Sama_0249 0.40 +0.3
274,015 + Sama_0249 0.40 -1.1
274,015 + Sama_0249 0.40 -0.7
274,016 - Sama_0249 0.40 -0.1
274,062 + Sama_0249 0.48 +0.5
274,062 + Sama_0249 0.48 -0.3
274,062 + Sama_0249 0.48 -0.7
274,066 + Sama_0249 0.48 +0.2
274,067 - Sama_0249 0.49 -1.1
274,071 + Sama_0249 0.49 -1.1
274,078 + Sama_0249 0.51 -0.5
274,101 + Sama_0249 0.54 -0.1
274,102 - Sama_0249 0.55 -0.1
274,132 + Sama_0249 0.60 -0.5
274,132 + Sama_0249 0.60 +0.7
274,133 - Sama_0249 0.60 -1.1
274,133 - Sama_0249 0.60 -0.1
274,133 - Sama_0249 0.60 -0.1
274,133 - Sama_0249 0.60 +0.1
274,133 - Sama_0249 0.60 +1.5
274,133 - Sama_0249 0.60 +0.1
274,133 - Sama_0249 0.60 -1.5
274,136 + Sama_0249 0.60 -1.5
274,136 + Sama_0249 0.60 -0.5
274,136 + Sama_0249 0.60 -2.0
274,136 + Sama_0249 0.60 +0.5
274,136 + Sama_0249 0.60 +0.1
274,136 + Sama_0249 0.60 +0.5
274,136 + Sama_0249 0.60 -0.9
274,137 - Sama_0249 0.61 -1.3
274,137 - Sama_0249 0.61 -1.1
274,186 + Sama_0249 0.69 -1.0
274,186 + Sama_0249 0.69 +0.5
274,186 + Sama_0249 0.69 -1.3
274,186 + Sama_0249 0.69 -1.1
274,186 + Sama_0249 0.69 -2.0
274,187 - Sama_0249 0.69 +0.9
274,187 - Sama_0249 0.69 -2.0
274,187 - Sama_0249 0.69 -0.7
274,187 - Sama_0249 0.69 -0.9
274,187 - Sama_0249 0.69 -0.3
274,187 - Sama_0249 0.69 -0.5
274,187 - Sama_0249 0.69 -1.1
274,187 - Sama_0249 0.69 -2.0
274,187 - Sama_0249 0.69 -0.3
274,187 - Sama_0249 0.69 -0.1
274,187 - Sama_0249 0.69 -1.5
274,219 - Sama_0249 0.74 -0.1
274,224 + Sama_0249 0.75 -0.1
274,225 - Sama_0249 0.76 +0.5
274,227 + Sama_0249 0.76 -0.6
274,227 + Sama_0249 0.76 -1.9
274,227 + Sama_0249 0.76 -1.5
274,228 - Sama_0249 0.76 -1.1
274,376 - +0.4
274,406 + -1.1
274,443 + Sama_0250 0.15 -1.5
274,443 + Sama_0250 0.15 -0.4
274,444 - Sama_0250 0.16 +0.7
274,444 - Sama_0250 0.16 -0.1
274,451 + Sama_0250 0.17 -1.5
274,451 + Sama_0250 0.17 -1.0
274,452 - Sama_0250 0.17 -0.3
274,575 + Sama_0250 0.42 -1.3
274,622 + Sama_0250 0.51 -0.9
274,635 + Sama_0250 0.54 -0.1
274,636 - Sama_0250 0.54 -1.3
274,654 - Sama_0250 0.57 -0.1
274,654 - Sama_0250 0.57 -1.1
274,654 - Sama_0250 0.57 -0.4
274,655 + Sama_0250 0.58 -0.9
274,655 + Sama_0250 0.58 -2.1
274,655 + Sama_0250 0.58 +1.8
274,656 - Sama_0250 0.58 -0.7
274,680 + Sama_0250 0.62 -1.7
274,680 + Sama_0250 0.62 -0.9
274,680 + Sama_0250 0.62 -2.0
274,680 + Sama_0250 0.62 -1.3
274,680 + Sama_0250 0.62 -2.0
274,680 + Sama_0250 0.62 +1.5
274,680 + Sama_0250 0.62 -1.6
274,680 + Sama_0250 0.62 -0.7
274,681 - Sama_0250 0.63 -2.0
274,681 - Sama_0250 0.63 -1.9
274,681 - Sama_0250 0.63 +0.5
274,681 - Sama_0250 0.63 +0.5
274,681 - Sama_0250 0.63 -0.5
274,681 - Sama_0250 0.63 -0.5
274,681 - Sama_0250 0.63 -1.1
274,681 - Sama_0250 0.63 -1.1
274,682 + Sama_0250 0.63 -1.1
274,702 + Sama_0250 0.67 -2.0
274,703 - Sama_0250 0.67 -1.2
274,703 - Sama_0250 0.67 -1.3
274,732 + Sama_0250 0.73 -1.3
274,732 + Sama_0250 0.73 -1.0
274,732 + Sama_0250 0.73 +0.9
274,732 + Sama_0250 0.73 -1.1
274,732 + Sama_0250 0.73 -0.6
274,735 + Sama_0250 0.73 -2.3
274,735 + Sama_0250 0.73 +0.1
274,735 + Sama_0250 0.73 -0.7
274,735 + Sama_0250 0.73 +0.4
274,735 + Sama_0250 0.73 -0.6
274,735 + Sama_0250 0.73 +0.2
274,735 + Sama_0250 0.73 -0.1
274,735 + Sama_0250 0.73 -0.9
274,736 - Sama_0250 0.74 -1.3
274,736 - Sama_0250 0.74 -1.2
274,736 - Sama_0250 0.74 -0.9
274,736 - Sama_0250 0.74 -1.3
274,738 + Sama_0250 0.74 -0.3
274,738 + Sama_0250 0.74 -0.3
274,738 + Sama_0250 0.74 -1.3
274,738 + Sama_0250 0.74 -1.0
274,739 - Sama_0250 0.74 -1.3
274,739 - Sama_0250 0.74 +0.9
274,739 - Sama_0250 0.74 -0.9
274,749 - Sama_0250 0.76 +0.7
274,826 + +0.3
274,857 - +1.3
274,857 - -0.0
274,875 + -0.9
274,876 - +0.2
275,051 + Sama_0251 0.32 +0.0
275,051 + Sama_0251 0.32 +1.8
275,051 + Sama_0251 0.32 +1.8
275,077 + Sama_0251 0.36 -1.0
275,077 + Sama_0251 0.36 +0.5
275,077 + Sama_0251 0.36 +1.1
275,077 + Sama_0251 0.36 +0.5
275,077 + Sama_0251 0.36 -0.7
275,077 + Sama_0251 0.36 +1.8
275,078 - Sama_0251 0.37 +0.7
275,078 - Sama_0251 0.37 +0.1
275,078 - Sama_0251 0.37 +1.7
275,078 - Sama_0251 0.37 +0.2
275,078 - Sama_0251 0.37 +0.5
275,078 - Sama_0251 0.37 -0.0
275,086 + Sama_0251 0.38 -0.1
275,086 + Sama_0251 0.38 +1.7
275,087 - Sama_0251 0.38 -2.3
275,116 - Sama_0251 0.43 -0.5
275,116 - Sama_0251 0.43 -0.4
275,134 + Sama_0251 0.46 +1.7
275,134 + Sama_0251 0.46 +0.7
275,134 + Sama_0251 0.46 +1.4
275,135 - Sama_0251 0.46 -0.2
275,179 + Sama_0251 0.54 +1.5
275,179 + Sama_0251 0.54 -1.7
275,179 + Sama_0251 0.54 +0.1
275,180 - Sama_0251 0.54 -1.2
275,180 - Sama_0251 0.54 +0.1
275,180 - Sama_0251 0.54 -0.4
275,180 - Sama_0251 0.54 +0.2
275,180 - Sama_0251 0.54 +0.5
275,194 + Sama_0251 0.57 +0.1
275,217 + Sama_0251 0.60 -1.1
275,271 + Sama_0251 0.70 +1.3
275,271 + Sama_0251 0.70 -0.2
275,272 - Sama_0251 0.70 -0.3
275,272 - Sama_0251 0.70 -0.1
275,293 + Sama_0251 0.74 -0.3
275,294 - Sama_0251 0.74 -0.3
275,312 - Sama_0251 0.77 +0.7
275,312 - Sama_0251 0.77 -0.1
275,317 + Sama_0251 0.78 -0.3
275,317 + Sama_0251 0.78 +1.3
275,317 + Sama_0251 0.78 +1.1
275,318 - Sama_0251 0.78 -1.1
275,320 + Sama_0251 0.78 -0.5
275,320 + Sama_0251 0.78 +1.0
275,321 - Sama_0251 0.78 +0.1
275,321 - Sama_0251 0.78 -2.5
275,374 + Sama_0251 0.87 -0.2
275,392 + -1.3
275,392 + -0.5
275,392 + -1.2
275,393 - -0.4
275,415 + -0.4
275,444 + +0.8
275,444 + -0.6
275,484 + +1.0
275,553 - +0.7
275,554 + -0.4
275,554 + +0.2
275,555 - +0.5
275,601 + -2.1
275,601 + +0.8

Or see this region's nucleotide sequence