Strain Fitness in Shewanella amazonensis SB2B around Sama_0093

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
103,812	+				-0.1
103,812	+				+0.1
103,813	-				+0.8
103,876	+				+1.7
103,876	+				+0.7
103,876	-				+0.6
103,876	+				-0.9
103,876	+				-0.0
103,876	+				-0.1
103,876	+				+0.2
103,877	-				+0.3
103,877	-				-0.4
103,877	-				-2.0
103,877	-				+0.7
103,919	+				-0.3
103,920	-				-0.4
103,920	-				+0.4
103,972	+				+0.2
103,981	-				-0.3
103,994	+				+0.9
104,030	-				+1.6
104,030	-				+0.2
104,091	-				-1.3
104,126	-				+1.8
104,128	+				+1.0
104,128	+				-0.7
104,128	+				-0.7
104,129	-				-1.5
104,129	-				+1.3
104,130	-				+1.4
104,220	+				-0.1
104,221	-				-1.1
104,221	-				+0.4
104,221	-				+0.5
104,232	+				-0.3
104,232	+				-0.5
104,233	-				+0.7
104,244	-				+0.4
104,264	+				-0.7
104,264	+				+0.5
104,265	-				+0.1
104,275	-				-0.4
104,308	+				+0.1
104,309	-				+0.6
104,313	+				+0.6
104,319	+				+0.5
104,319	+				-1.0
104,320	-				-1.7
104,369	+				+0.2
104,369	+				-0.4
104,369	+				-0.5
104,413	+				+0.1
104,413	+				-0.4
104,414	-				-0.0
104,438	+				-0.1
104,438	+				-0.0
104,438	+				+0.6
104,438	+				-0.3
104,439	-				-0.7
104,446	-				-0.2
104,446	-				-1.1
104,468	+				-1.4
104,491	+				-0.8
104,505	-				-1.5
104,513	+				+0.7
104,523	+				-0.5
104,524	-				+0.2
104,524	-				+0.7
104,524	-				+0.7
104,534	+				-1.0
104,535	-				+0.2
104,535	-				+0.1
104,535	-				-0.9
104,557	+				-2.0
104,558	-				-0.4
104,579	+				+0.4
104,581	+				-0.0
104,581	+				+0.3
104,581	+				+0.8
104,581	+				-0.7
104,581	+				-0.6
104,581	+				+0.9
104,581	+				+0.1
104,581	+				-0.4
104,581	+				-0.1
104,582	-				-0.3
104,582	-				+0.1
104,582	-				-0.2
104,582	-				-0.1
104,582	-				-0.1
104,582	-				-1.3
104,582	-				-0.6
104,582	-				-0.2
104,582	-				+0.2
104,591	-				+0.7
104,621	+				-0.8
104,621	+				+1.1
104,622	-				-0.8
104,666	-				-0.1
104,671	+				+0.3
104,671	+				-0.1
104,671	+				+0.3
104,671	+				-1.0
104,671	+				-0.8
104,671	+				+0.5
104,671	+				+1.5
104,671	+				-0.7
104,671	+				-0.4
104,671	+				-0.5
104,671	+				+0.2
104,671	+				+0.7
104,671	+				-2.0
104,671	+				-0.0
104,671	+				+0.5
104,672	-				+0.0
104,672	-				+0.1
104,672	-				-0.2
104,672	-				+1.2
104,672	-				+0.3
104,672	-				-0.6
104,672	-				-0.8
104,672	-				+0.3
104,672	-				+0.7
104,672	-				-0.5
104,672	-				-0.5
104,672	-				-0.5
104,672	-				-1.6
104,672	-				+0.2
104,672	-				+0.6
104,672	-				+1.5
104,672	-				+0.6
104,672	-				-0.8
104,672	-				+0.0
104,672	-				+0.3
104,672	-				-0.5
104,672	-				+0.9
104,676	+				+0.9
104,676	+				-0.6
104,676	+				+0.3
104,676	+				-1.0
104,677	-				+0.1
104,677	-				-0.3
104,677	-				-0.2
104,677	-				+0.5
104,677	-				-2.1
104,677	-				-0.6
104,698	+				-1.0
104,699	-				+0.2
104,699	-				+0.1
104,699	-				-0.5
105,174	-		Sama_0093	0.18	-0.4
105,174	-		Sama_0093	0.18	-0.5
106,125	-		Sama_0093	0.52	-0.5
106,379	-		Sama_0093	0.61	-0.5
106,381	-		Sama_0093	0.61	-1.3
106,381	-		Sama_0093	0.61	-0.8
106,381	-		Sama_0093	0.61	-1.7
106,480	-		Sama_0093	0.65	-1.5
107,450	-				-1.5
107,501	+				-0.3
107,501	+				+0.6
107,502	-				-1.3
107,555	+				+0.3
107,556	-				-2.1
107,704	+				-0.7
107,704	+				-0.2
107,705	-				+0.1
107,725	+				+0.3
107,725	+				+1.6
107,725	+				+0.3
107,725	+				+1.1
107,725	+				-0.4
107,725	+				+0.4
107,725	+				-2.1
107,725	+				-0.4
107,725	+				-0.1
107,725	+				+0.7
107,726	-				-0.2
107,726	-				-0.4
107,726	-				-1.1
107,726	-				+0.0
107,756	+				+0.5
107,761	+				+0.4
107,762	-				+1.5
107,816	+				+0.7
107,816	+				+1.0
107,820	+				+0.7
107,820	+				-1.2
107,852	+				+0.7
107,961	+		Sama_0094	0.19	-2.0
107,962	-		Sama_0094	0.19	-2.2
107,962	-		Sama_0094	0.19	-1.0
108,063	+		Sama_0094	0.35	+0.9
108,063	+		Sama_0094	0.35	-1.0
108,063	+		Sama_0094	0.35	-1.2
108,063	+		Sama_0094	0.35	-0.5
108,063	+		Sama_0094	0.35	-0.6
108,064	-		Sama_0094	0.35	-0.6
108,064	-		Sama_0094	0.35	-0.3
108,064	-		Sama_0094	0.35	+0.0
108,064	-		Sama_0094	0.35	-0.8
108,064	-		Sama_0094	0.35	-1.3
108,064	-		Sama_0094	0.35	+2.0
108,080	+		Sama_0094	0.37	-0.8
108,080	+		Sama_0094	0.37	+1.8
108,080	+		Sama_0094	0.37	-0.1
108,080	+		Sama_0094	0.37	-0.2
108,081	-		Sama_0094	0.37	+1.0
108,081	-		Sama_0094	0.37	+0.4
108,081	-		Sama_0094	0.37	-0.1
108,108	+		Sama_0094	0.42	-0.4
108,198	+		Sama_0094	0.55	+0.7
108,199	-		Sama_0094	0.56	-0.4
108,231	-		Sama_0094	0.60	+0.8
108,237	+		Sama_0094	0.61	-0.9
108,237	+		Sama_0094	0.61	+0.3
108,237	+		Sama_0094	0.61	-0.1
108,238	-		Sama_0094	0.61	-0.8
108,238	-		Sama_0094	0.61	-1.7
108,238	-		Sama_0094	0.61	+0.5
108,238	-		Sama_0094	0.61	+0.0
108,243	+		Sama_0094	0.62	-1.7
108,243	+		Sama_0094	0.62	-1.3
108,244	-		Sama_0094	0.62	-0.1
108,244	-		Sama_0094	0.62	+0.5
108,244	-		Sama_0094	0.62	-1.0
108,244	-		Sama_0094	0.62	-1.3
108,271	+		Sama_0094	0.67	+0.8
108,271	+		Sama_0094	0.67	+0.1
108,272	-		Sama_0094	0.67	-0.8
108,272	-		Sama_0094	0.67	-0.1
108,276	+		Sama_0094	0.67	+0.8
108,291	+		Sama_0094	0.70	+0.5
108,291	+		Sama_0094	0.70	-0.2
108,291	+		Sama_0094	0.70	-0.7
108,291	+		Sama_0094	0.70	+0.9
108,291	+		Sama_0094	0.70	-0.1
108,292	-		Sama_0094	0.70	-0.3
108,292	-		Sama_0094	0.70	+0.1
108,292	-		Sama_0094	0.70	+1.2
108,292	-		Sama_0094	0.70	+1.4
108,294	+		Sama_0094	0.70	-0.1
108,294	+		Sama_0094	0.70	+0.0
108,294	+		Sama_0094	0.70	-0.5
108,294	+		Sama_0094	0.70	+0.3
108,294	+		Sama_0094	0.70	+0.8
108,294	+		Sama_0094	0.70	-0.8
108,294	+		Sama_0094	0.70	-0.5
108,295	-		Sama_0094	0.70	+0.8
108,295	-		Sama_0094	0.70	-0.8
108,295	-		Sama_0094	0.70	-0.1
108,330	+		Sama_0094	0.76	-0.2
108,330	+		Sama_0094	0.76	-0.8
108,331	-		Sama_0094	0.76	-0.3
108,331	-		Sama_0094	0.76	-0.4
108,363	-		Sama_0094	0.81	-1.7
108,388	-		Sama_0094	0.84	-1.7
108,395	+		Sama_0094	0.85	+0.6
108,395	+		Sama_0094	0.85	-0.0
108,395	+		Sama_0094	0.85	+1.8
108,396	-		Sama_0094	0.86	-0.2
108,396	-		Sama_0094	0.86	-0.1
108,412	+		Sama_0094	0.88	-0.4
108,412	+		Sama_0094	0.88	-1.3
108,412	+		Sama_0094	0.88	-0.5
108,412	+		Sama_0094	0.88	-0.4
108,412	+		Sama_0094	0.88	+0.8
108,412	+		Sama_0094	0.88	-0.3
108,412	+		Sama_0094	0.88	+0.2
108,412	+		Sama_0094	0.88	-1.9
108,412	+		Sama_0094	0.88	-0.5
108,412	+		Sama_0094	0.88	-0.4
108,412	+		Sama_0094	0.88	+0.6
108,412	+		Sama_0094	0.88	-1.0
108,412	+		Sama_0094	0.88	-0.7
108,412	+		Sama_0094	0.88	+0.8
108,412	+		Sama_0094	0.88	-1.1
108,412	+		Sama_0094	0.88	-1.1
108,413	-		Sama_0094	0.88	+0.9
108,413	-		Sama_0094	0.88	+0.4
108,413	-		Sama_0094	0.88	-0.6
108,413	-		Sama_0094	0.88	-1.8
108,413	-		Sama_0094	0.88	-0.9
108,413	-		Sama_0094	0.88	+1.1
108,413	-		Sama_0094	0.88	+0.3
108,413	-		Sama_0094	0.88	+0.1
108,413	-		Sama_0094	0.88	-0.3
108,413	-		Sama_0094	0.88	+0.8
108,413	-		Sama_0094	0.88	+1.2
108,413	-		Sama_0094	0.88	-1.3
108,413	-		Sama_0094	0.88	+0.1
108,413	-		Sama_0094	0.88	-1.0
108,413	-		Sama_0094	0.88	-0.6
108,413	-		Sama_0094	0.88	-0.8
108,413	-		Sama_0094	0.88	-0.3
108,413	-		Sama_0094	0.88	+0.6
108,414	+		Sama_0094	0.88	-0.5
108,414	+		Sama_0094	0.88	-0.5
108,414	+		Sama_0094	0.88	-1.2
108,414	+		Sama_0094	0.88	+0.0
108,414	+		Sama_0094	0.88	-1.1
108,414	+		Sama_0094	0.88	-3.5
108,414	+		Sama_0094	0.88	+0.1
108,414	+		Sama_0094	0.88	-1.5
108,414	+		Sama_0094	0.88	+1.1
108,414	+		Sama_0094	0.88	-0.3
108,414	+		Sama_0094	0.88	-0.4
108,414	+		Sama_0094	0.88	+0.2
108,414	+		Sama_0094	0.88	+0.0
108,414	+		Sama_0094	0.88	+0.1
108,414	+		Sama_0094	0.88	-0.4
108,414	+		Sama_0094	0.88	-0.3
108,414	+		Sama_0094	0.88	+0.3
108,414	+		Sama_0094	0.88	-0.3
108,414	+		Sama_0094	0.88	-1.0
108,414	+		Sama_0094	0.88	-0.5
108,414	+		Sama_0094	0.88	-0.9
108,414	+		Sama_0094	0.88	+0.0
108,414	+		Sama_0094	0.88	-0.7
108,414	+		Sama_0094	0.88	-0.1
108,414	+		Sama_0094	0.88	+1.0
108,414	+		Sama_0094	0.88	-0.0
108,414	+		Sama_0094	0.88	-0.6
108,414	+		Sama_0094	0.88	+0.7
108,414	+		Sama_0094	0.88	+0.6
108,414	+		Sama_0094	0.88	-0.1
108,414	+		Sama_0094	0.88	-1.7
108,414	+		Sama_0094	0.88	+0.3
108,414	+		Sama_0094	0.88	-0.2
108,414	+		Sama_0094	0.88	+0.5
108,414	+		Sama_0094	0.88	-2.3
108,415	-		Sama_0094	0.89	-0.3
108,415	-		Sama_0094	0.89	-1.1
108,415	-		Sama_0094	0.89	+0.3
108,415	-		Sama_0094	0.89	+1.0
108,415	-		Sama_0094	0.89	-2.0
108,415	-		Sama_0094	0.89	+0.0
108,415	-		Sama_0094	0.89	-1.2
108,415	-		Sama_0094	0.89	-0.5
108,415	-		Sama_0094	0.89	+0.5
108,415	-		Sama_0094	0.89	+1.1
108,415	-		Sama_0094	0.89	-0.5
108,415	-		Sama_0094	0.89	-1.0
108,415	-		Sama_0094	0.89	-0.2
108,415	-		Sama_0094	0.89	-1.0
108,415	-		Sama_0094	0.89	+0.0
108,415	-		Sama_0094	0.89	+0.8
108,415	-		Sama_0094	0.89	-0.5
108,415	-		Sama_0094	0.89	+1.4
108,415	-		Sama_0094	0.89	+1.3
108,415	-		Sama_0094	0.89	-0.9
108,415	-		Sama_0094	0.89	+0.5
108,415	-		Sama_0094	0.89	-0.4
108,415	-		Sama_0094	0.89	-0.5
108,415	-		Sama_0094	0.89	-1.0
108,415	-		Sama_0094	0.89	-0.4
108,415	-		Sama_0094	0.89	-1.5
108,415	-		Sama_0094	0.89	-0.2
108,415	-		Sama_0094	0.89	+0.6
108,415	-		Sama_0094	0.89	+0.3
108,415	-		Sama_0094	0.89	-0.7
108,415	-		Sama_0094	0.89	+0.6
108,415	-		Sama_0094	0.89	-0.1