Strain Fitness in Shewanella amazonensis SB2B around Sama_0059

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0058 and Sama_0059 are separated by 30 nucleotidesSama_0059 and Sama_0060 are separated by 5 nucleotides Sama_0058: Sama_0058 - C-terminal processing peptidase (RefSeq), at 62,780 to 63,976 _0058 Sama_0059: Sama_0059 - M24/M37 family peptidase (RefSeq), at 64,007 to 65,143 _0059 Sama_0060: Sama_0060 - phosphoglyceromutase (RefSeq), at 65,149 to 66,690 _0060 Position (kb) 64 65 66Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 63.010 kb on + strand, within Sama_0058at 63.020 kb on + strand, within Sama_0058at 63.020 kb on + strand, within Sama_0058at 63.020 kb on + strand, within Sama_0058at 63.020 kb on + strand, within Sama_0058at 63.021 kb on - strand, within Sama_0058at 63.021 kb on - strand, within Sama_0058at 63.119 kb on - strand, within Sama_0058at 63.124 kb on + strand, within Sama_0058at 63.124 kb on + strand, within Sama_0058at 63.125 kb on - strand, within Sama_0058at 63.125 kb on - strand, within Sama_0058at 63.174 kb on + strand, within Sama_0058at 63.174 kb on + strand, within Sama_0058at 63.174 kb on + strand, within Sama_0058at 63.175 kb on - strand, within Sama_0058at 63.175 kb on - strand, within Sama_0058at 63.195 kb on + strand, within Sama_0058at 63.195 kb on + strand, within Sama_0058at 63.195 kb on + strand, within Sama_0058at 63.195 kb on + strand, within Sama_0058at 63.216 kb on - strand, within Sama_0058at 63.287 kb on + strand, within Sama_0058at 63.287 kb on + strand, within Sama_0058at 63.288 kb on - strand, within Sama_0058at 63.298 kb on + strand, within Sama_0058at 63.298 kb on + strand, within Sama_0058at 63.298 kb on + strand, within Sama_0058at 63.299 kb on - strand, within Sama_0058at 63.299 kb on - strand, within Sama_0058at 63.335 kb on + strand, within Sama_0058at 63.336 kb on - strand, within Sama_0058at 63.337 kb on - strand, within Sama_0058at 63.382 kb on - strand, within Sama_0058at 63.382 kb on - strand, within Sama_0058at 63.399 kb on - strand, within Sama_0058at 63.399 kb on - strand, within Sama_0058at 63.456 kb on + strand, within Sama_0058at 63.456 kb on + strand, within Sama_0058at 63.456 kb on + strand, within Sama_0058at 63.456 kb on + strand, within Sama_0058at 63.456 kb on + strand, within Sama_0058at 63.457 kb on - strand, within Sama_0058at 63.457 kb on - strand, within Sama_0058at 63.457 kb on - strand, within Sama_0058at 63.503 kb on - strand, within Sama_0058at 63.517 kb on - strand, within Sama_0058at 63.580 kb on + strand, within Sama_0058at 63.587 kb on - strand, within Sama_0058at 63.690 kb on + strand, within Sama_0058at 63.690 kb on + strand, within Sama_0058at 63.691 kb on - strand, within Sama_0058at 63.706 kb on + strand, within Sama_0058at 63.715 kb on + strand, within Sama_0058at 63.715 kb on + strand, within Sama_0058at 63.716 kb on - strand, within Sama_0058at 63.742 kb on - strand, within Sama_0058at 63.809 kb on + strand, within Sama_0058at 63.810 kb on - strand, within Sama_0058at 63.810 kb on - strand, within Sama_0058at 63.822 kb on + strand, within Sama_0058at 63.822 kb on + strand, within Sama_0058at 63.822 kb on + strand, within Sama_0058at 63.822 kb on + strand, within Sama_0058at 63.822 kb on + strand, within Sama_0058at 63.822 kb on + strand, within Sama_0058at 63.822 kb on + strand, within Sama_0058at 63.822 kb on + strand, within Sama_0058at 63.822 kb on + strand, within Sama_0058at 63.822 kb on + strand, within Sama_0058at 63.822 kb on + strand, within Sama_0058at 63.822 kb on + strand, within Sama_0058at 63.823 kb on - strand, within Sama_0058at 63.823 kb on - strand, within Sama_0058at 63.823 kb on - strand, within Sama_0058at 63.823 kb on - strand, within Sama_0058at 63.823 kb on - strand, within Sama_0058at 63.823 kb on - strand, within Sama_0058at 63.823 kb on - strand, within Sama_0058at 63.823 kb on - strand, within Sama_0058at 63.823 kb on - strand, within Sama_0058at 63.823 kb on - strand, within Sama_0058at 63.825 kb on + strand, within Sama_0058at 63.825 kb on + strand, within Sama_0058at 63.825 kb on + strand, within Sama_0058at 63.825 kb on + strand, within Sama_0058at 63.826 kb on - strand, within Sama_0058at 63.826 kb on - strand, within Sama_0058at 63.826 kb on - strand, within Sama_0058at 63.826 kb on - strand, within Sama_0058at 63.826 kb on - strand, within Sama_0058at 63.826 kb on - strand, within Sama_0058at 63.826 kb on - strand, within Sama_0058at 63.826 kb on - strand, within Sama_0058at 63.826 kb on - strand, within Sama_0058at 63.838 kb on + strand, within Sama_0058at 63.838 kb on + strand, within Sama_0058at 63.839 kb on - strand, within Sama_0058at 63.844 kb on + strand, within Sama_0058at 63.844 kb on + strand, within Sama_0058at 63.845 kb on - strand, within Sama_0058at 63.845 kb on - strand, within Sama_0058at 63.845 kb on - strand, within Sama_0058at 63.845 kb on - strand, within Sama_0058at 63.845 kb on - strand, within Sama_0058at 63.845 kb on - strand, within Sama_0058at 63.851 kb on + strand, within Sama_0058at 63.851 kb on + strand, within Sama_0058at 63.852 kb on - strand, within Sama_0058at 63.852 kb on - strand, within Sama_0058at 63.852 kb on - strand, within Sama_0058at 63.864 kb on + strandat 63.865 kb on - strandat 63.870 kb on + strandat 63.871 kb on - strandat 63.914 kb on + strandat 63.914 kb on + strandat 63.957 kb on + strandat 63.958 kb on - strandat 63.976 kb on + strandat 63.976 kb on + strandat 63.976 kb on + strandat 63.976 kb on + strandat 63.976 kb on + strandat 63.977 kb on - strandat 64.020 kb on + strandat 64.055 kb on + strandat 64.056 kb on - strandat 64.065 kb on + strandat 64.065 kb on + strandat 64.066 kb on - strandat 64.066 kb on - strandat 64.067 kb on + strandat 64.068 kb on - strandat 64.100 kb on + strandat 64.147 kb on + strand, within Sama_0059at 64.147 kb on + strand, within Sama_0059at 64.148 kb on - strand, within Sama_0059at 64.148 kb on - strand, within Sama_0059at 64.148 kb on - strand, within Sama_0059at 64.170 kb on + strand, within Sama_0059at 64.171 kb on - strand, within Sama_0059at 64.171 kb on - strand, within Sama_0059at 64.183 kb on - strand, within Sama_0059at 64.183 kb on - strand, within Sama_0059at 64.183 kb on - strand, within Sama_0059at 64.183 kb on - strand, within Sama_0059at 64.183 kb on - strand, within Sama_0059at 64.183 kb on - strand, within Sama_0059at 64.208 kb on + strand, within Sama_0059at 64.208 kb on + strand, within Sama_0059at 64.209 kb on - strand, within Sama_0059at 64.214 kb on - strand, within Sama_0059at 64.239 kb on + strand, within Sama_0059at 64.239 kb on + strand, within Sama_0059at 64.239 kb on + strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.240 kb on - strand, within Sama_0059at 64.241 kb on + strand, within Sama_0059at 64.241 kb on + strand, within Sama_0059at 64.242 kb on - strand, within Sama_0059at 64.269 kb on - strand, within Sama_0059at 64.269 kb on - strand, within Sama_0059at 64.331 kb on - strand, within Sama_0059at 64.349 kb on + strand, within Sama_0059at 64.349 kb on + strand, within Sama_0059at 64.350 kb on - strand, within Sama_0059at 64.400 kb on + strand, within Sama_0059at 64.401 kb on - strand, within Sama_0059at 64.409 kb on - strand, within Sama_0059at 64.420 kb on + strand, within Sama_0059at 64.430 kb on + strand, within Sama_0059at 64.453 kb on + strand, within Sama_0059at 64.454 kb on - strand, within Sama_0059at 64.470 kb on - strand, within Sama_0059at 64.470 kb on - strand, within Sama_0059at 64.505 kb on + strand, within Sama_0059at 64.505 kb on + strand, within Sama_0059at 64.693 kb on + strand, within Sama_0059at 64.694 kb on - strand, within Sama_0059at 64.707 kb on + strand, within Sama_0059at 64.707 kb on + strand, within Sama_0059at 64.708 kb on - strand, within Sama_0059at 64.727 kb on + strand, within Sama_0059at 64.728 kb on - strand, within Sama_0059at 64.728 kb on - strand, within Sama_0059at 64.728 kb on - strand, within Sama_0059at 64.788 kb on + strand, within Sama_0059at 64.879 kb on + strand, within Sama_0059at 64.900 kb on + strand, within Sama_0059at 64.900 kb on + strand, within Sama_0059at 64.901 kb on - strand, within Sama_0059at 64.901 kb on - strand, within Sama_0059at 64.901 kb on - strand, within Sama_0059at 64.957 kb on + strand, within Sama_0059at 64.958 kb on - strand, within Sama_0059at 64.988 kb on - strand, within Sama_0059at 65.041 kb on + strandat 65.042 kb on - strandat 65.090 kb on + strandat 65.130 kb on - strandat 65.130 kb on - strandat 65.130 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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63,010 + Sama_0058 0.19 +0.2
63,020 + Sama_0058 0.20 +0.4
63,020 + Sama_0058 0.20 -0.8
63,020 + Sama_0058 0.20 -1.3
63,020 + Sama_0058 0.20 +0.8
63,021 - Sama_0058 0.20 +2.5
63,021 - Sama_0058 0.20 -0.0
63,119 - Sama_0058 0.28 -0.1
63,124 + Sama_0058 0.29 -0.0
63,124 + Sama_0058 0.29 +0.2
63,125 - Sama_0058 0.29 -0.4
63,125 - Sama_0058 0.29 +0.8
63,174 + Sama_0058 0.33 -1.7
63,174 + Sama_0058 0.33 -0.9
63,174 + Sama_0058 0.33 -0.4
63,175 - Sama_0058 0.33 -0.5
63,175 - Sama_0058 0.33 +1.0
63,195 + Sama_0058 0.35 -0.7
63,195 + Sama_0058 0.35 -0.5
63,195 + Sama_0058 0.35 -0.1
63,195 + Sama_0058 0.35 +2.1
63,216 - Sama_0058 0.36 -1.1
63,287 + Sama_0058 0.42 -0.8
63,287 + Sama_0058 0.42 -1.0
63,288 - Sama_0058 0.42 +1.0
63,298 + Sama_0058 0.43 -0.5
63,298 + Sama_0058 0.43 -2.3
63,298 + Sama_0058 0.43 +0.6
63,299 - Sama_0058 0.43 -1.8
63,299 - Sama_0058 0.43 +0.8
63,335 + Sama_0058 0.46 +0.6
63,336 - Sama_0058 0.46 +0.3
63,337 - Sama_0058 0.47 -0.1
63,382 - Sama_0058 0.50 +0.8
63,382 - Sama_0058 0.50 +1.9
63,399 - Sama_0058 0.52 +0.8
63,399 - Sama_0058 0.52 +1.3
63,456 + Sama_0058 0.56 -0.0
63,456 + Sama_0058 0.56 -0.2
63,456 + Sama_0058 0.56 -1.4
63,456 + Sama_0058 0.56 -0.1
63,456 + Sama_0058 0.56 -0.9
63,457 - Sama_0058 0.57 -0.9
63,457 - Sama_0058 0.57 -1.0
63,457 - Sama_0058 0.57 -1.3
63,503 - Sama_0058 0.60 +0.2
63,517 - Sama_0058 0.62 -0.7
63,580 + Sama_0058 0.67 +0.7
63,587 - Sama_0058 0.67 +1.2
63,690 + Sama_0058 0.76 +0.1
63,690 + Sama_0058 0.76 +0.5
63,691 - Sama_0058 0.76 -1.7
63,706 + Sama_0058 0.77 -0.4
63,715 + Sama_0058 0.78 -0.0
63,715 + Sama_0058 0.78 +0.1
63,716 - Sama_0058 0.78 -1.0
63,742 - Sama_0058 0.80 -0.1
63,809 + Sama_0058 0.86 +0.7
63,810 - Sama_0058 0.86 -0.5
63,810 - Sama_0058 0.86 -0.0
63,822 + Sama_0058 0.87 -2.0
63,822 + Sama_0058 0.87 -0.9
63,822 + Sama_0058 0.87 +0.1
63,822 + Sama_0058 0.87 +0.8
63,822 + Sama_0058 0.87 -0.4
63,822 + Sama_0058 0.87 +0.7
63,822 + Sama_0058 0.87 -1.1
63,822 + Sama_0058 0.87 +1.5
63,822 + Sama_0058 0.87 +0.3
63,822 + Sama_0058 0.87 -0.3
63,822 + Sama_0058 0.87 +0.3
63,822 + Sama_0058 0.87 -0.6
63,823 - Sama_0058 0.87 -1.1
63,823 - Sama_0058 0.87 -0.1
63,823 - Sama_0058 0.87 +0.0
63,823 - Sama_0058 0.87 -0.1
63,823 - Sama_0058 0.87 -0.0
63,823 - Sama_0058 0.87 +0.9
63,823 - Sama_0058 0.87 -1.6
63,823 - Sama_0058 0.87 -0.2
63,823 - Sama_0058 0.87 -2.1
63,823 - Sama_0058 0.87 +0.1
63,825 + Sama_0058 0.87 +1.4
63,825 + Sama_0058 0.87 -0.8
63,825 + Sama_0058 0.87 -0.9
63,825 + Sama_0058 0.87 +0.1
63,826 - Sama_0058 0.87 +1.5
63,826 - Sama_0058 0.87 -0.0
63,826 - Sama_0058 0.87 +0.6
63,826 - Sama_0058 0.87 -0.1
63,826 - Sama_0058 0.87 -0.2
63,826 - Sama_0058 0.87 -1.3
63,826 - Sama_0058 0.87 +0.8
63,826 - Sama_0058 0.87 -0.2
63,826 - Sama_0058 0.87 +0.3
63,838 + Sama_0058 0.88 -0.1
63,838 + Sama_0058 0.88 -1.8
63,839 - Sama_0058 0.88 -0.2
63,844 + Sama_0058 0.89 +0.5
63,844 + Sama_0058 0.89 -0.0
63,845 - Sama_0058 0.89 +0.5
63,845 - Sama_0058 0.89 +0.2
63,845 - Sama_0058 0.89 -0.8
63,845 - Sama_0058 0.89 +0.8
63,845 - Sama_0058 0.89 -0.1
63,845 - Sama_0058 0.89 +2.2
63,851 + Sama_0058 0.89 -0.1
63,851 + Sama_0058 0.89 +0.6
63,852 - Sama_0058 0.90 +1.5
63,852 - Sama_0058 0.90 +0.6
63,852 - Sama_0058 0.90 +0.1
63,864 + +0.1
63,865 - -0.4
63,870 + +0.3
63,871 - +1.5
63,914 + +2.0
63,914 + -1.1
63,957 + -0.2
63,958 - -0.9
63,976 + +1.7
63,976 + +1.1
63,976 + -0.3
63,976 + -0.3
63,976 + -0.8
63,977 - -0.1
64,020 + -0.5
64,055 + -0.8
64,056 - -0.1
64,065 + -0.7
64,065 + -0.3
64,066 - -2.0
64,066 - -1.7
64,067 + -1.3
64,068 - -1.8
64,100 + -1.8
64,147 + Sama_0059 0.12 -1.5
64,147 + Sama_0059 0.12 -1.7
64,148 - Sama_0059 0.12 -1.9
64,148 - Sama_0059 0.12 -2.1
64,148 - Sama_0059 0.12 -2.0
64,170 + Sama_0059 0.14 -3.5
64,171 - Sama_0059 0.14 -1.8
64,171 - Sama_0059 0.14 -3.0
64,183 - Sama_0059 0.15 -1.4
64,183 - Sama_0059 0.15 -1.8
64,183 - Sama_0059 0.15 -2.0
64,183 - Sama_0059 0.15 -0.1
64,183 - Sama_0059 0.15 -1.4
64,183 - Sama_0059 0.15 -3.3
64,208 + Sama_0059 0.18 -1.7
64,208 + Sama_0059 0.18 -0.7
64,209 - Sama_0059 0.18 -1.1
64,214 - Sama_0059 0.18 -0.5
64,239 + Sama_0059 0.20 -1.8
64,239 + Sama_0059 0.20 -0.5
64,239 + Sama_0059 0.20 -2.1
64,240 - Sama_0059 0.20 -0.8
64,240 - Sama_0059 0.20 -1.9
64,240 - Sama_0059 0.20 -1.0
64,240 - Sama_0059 0.20 -1.3
64,240 - Sama_0059 0.20 -1.9
64,240 - Sama_0059 0.20 -1.5
64,240 - Sama_0059 0.20 -1.1
64,241 + Sama_0059 0.21 -0.8
64,241 + Sama_0059 0.21 -0.8
64,242 - Sama_0059 0.21 -1.6
64,269 - Sama_0059 0.23 -1.7
64,269 - Sama_0059 0.23 -0.8
64,331 - Sama_0059 0.28 -0.8
64,349 + Sama_0059 0.30 -3.8
64,349 + Sama_0059 0.30 -1.3
64,350 - Sama_0059 0.30 -2.0
64,400 + Sama_0059 0.35 -1.7
64,401 - Sama_0059 0.35 -2.0
64,409 - Sama_0059 0.35 -1.0
64,420 + Sama_0059 0.36 -2.2
64,430 + Sama_0059 0.37 +0.5
64,453 + Sama_0059 0.39 -1.1
64,454 - Sama_0059 0.39 +0.2
64,470 - Sama_0059 0.41 -2.5
64,470 - Sama_0059 0.41 -1.7
64,505 + Sama_0059 0.44 -2.1
64,505 + Sama_0059 0.44 -0.1
64,693 + Sama_0059 0.60 +1.2
64,694 - Sama_0059 0.60 -2.6
64,707 + Sama_0059 0.62 -1.7
64,707 + Sama_0059 0.62 -0.1
64,708 - Sama_0059 0.62 -2.2
64,727 + Sama_0059 0.63 -1.2
64,728 - Sama_0059 0.63 -1.6
64,728 - Sama_0059 0.63 -3.0
64,728 - Sama_0059 0.63 -1.8
64,788 + Sama_0059 0.69 -1.1
64,879 + Sama_0059 0.77 -2.5
64,900 + Sama_0059 0.79 -0.7
64,900 + Sama_0059 0.79 -0.5
64,901 - Sama_0059 0.79 -2.2
64,901 - Sama_0059 0.79 -1.4
64,901 - Sama_0059 0.79 -2.0
64,957 + Sama_0059 0.84 -2.0
64,958 - Sama_0059 0.84 +0.1
64,988 - Sama_0059 0.86 -1.5
65,041 + -0.4
65,042 - -1.4
65,090 + -4.0
65,130 - -1.4
65,130 - -1.3
65,130 - -2.8

Or see this region's nucleotide sequence