Strain Fitness in Shewanella amazonensis SB2B around Sama_0040

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0039 and trkA are separated by 2 nucleotidestrkA and Sama_0041 are separated by 17 nucleotides Sama_0039: Sama_0039 - potassium uptake protein TrkH (RefSeq), at 41,933 to 43,375 _0039 Sama_0040: trkA - potassium transporter peripheral membrane component (RefSeq), at 43,378 to 44,787 trkA Sama_0041: Sama_0041 - sun protein (RefSeq), at 44,805 to 46,088 _0041 Position (kb) 43 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 42.418 kb on - strand, within Sama_0039at 42.442 kb on + strand, within Sama_0039at 42.442 kb on + strand, within Sama_0039at 42.443 kb on - strand, within Sama_0039at 42.443 kb on - strand, within Sama_0039at 42.445 kb on + strand, within Sama_0039at 42.445 kb on + strand, within Sama_0039at 42.458 kb on + strand, within Sama_0039at 42.458 kb on + strand, within Sama_0039at 42.458 kb on + strand, within Sama_0039at 42.458 kb on + strand, within Sama_0039at 42.458 kb on + strand, within Sama_0039at 42.459 kb on - strand, within Sama_0039at 42.459 kb on - strand, within Sama_0039at 42.459 kb on - strand, within Sama_0039at 42.459 kb on - strand, within Sama_0039at 42.459 kb on - strand, within Sama_0039at 42.459 kb on - strand, within Sama_0039at 42.459 kb on - strand, within Sama_0039at 42.463 kb on + strand, within Sama_0039at 42.463 kb on + strand, within Sama_0039at 42.463 kb on + strand, within Sama_0039at 42.490 kb on + strand, within Sama_0039at 42.490 kb on + strand, within Sama_0039at 42.491 kb on - strand, within Sama_0039at 42.625 kb on + strand, within Sama_0039at 42.625 kb on + strand, within Sama_0039at 42.625 kb on + strand, within Sama_0039at 42.625 kb on + strand, within Sama_0039at 42.625 kb on + strand, within Sama_0039at 42.625 kb on + strand, within Sama_0039at 42.625 kb on + strand, within Sama_0039at 42.626 kb on - strand, within Sama_0039at 42.626 kb on - strand, within Sama_0039at 42.626 kb on - strand, within Sama_0039at 42.626 kb on - strand, within Sama_0039at 42.626 kb on - strand, within Sama_0039at 42.626 kb on - strand, within Sama_0039at 42.626 kb on - strand, within Sama_0039at 42.626 kb on - strand, within Sama_0039at 42.626 kb on - strand, within Sama_0039at 42.629 kb on + strand, within Sama_0039at 42.629 kb on + strand, within Sama_0039at 42.630 kb on - strand, within Sama_0039at 42.630 kb on - strand, within Sama_0039at 42.630 kb on - strand, within Sama_0039at 42.652 kb on + strand, within Sama_0039at 42.652 kb on + strand, within Sama_0039at 42.652 kb on + strand, within Sama_0039at 42.652 kb on + strand, within Sama_0039at 42.652 kb on + strand, within Sama_0039at 42.652 kb on + strand, within Sama_0039at 42.653 kb on - strand, within Sama_0039at 42.653 kb on - strand, within Sama_0039at 42.666 kb on - strand, within Sama_0039at 42.718 kb on - strand, within Sama_0039at 42.786 kb on + strand, within Sama_0039at 42.787 kb on - strand, within Sama_0039at 42.803 kb on + strand, within Sama_0039at 42.803 kb on + strand, within Sama_0039at 42.803 kb on + strand, within Sama_0039at 42.803 kb on + strand, within Sama_0039at 42.804 kb on - strand, within Sama_0039at 42.804 kb on - strand, within Sama_0039at 42.804 kb on - strand, within Sama_0039at 42.819 kb on + strand, within Sama_0039at 42.820 kb on - strand, within Sama_0039at 42.820 kb on - strand, within Sama_0039at 42.820 kb on - strand, within Sama_0039at 42.914 kb on + strand, within Sama_0039at 42.914 kb on + strand, within Sama_0039at 42.914 kb on + strand, within Sama_0039at 42.914 kb on + strand, within Sama_0039at 42.914 kb on + strand, within Sama_0039at 42.914 kb on + strand, within Sama_0039at 42.914 kb on + strand, within Sama_0039at 42.914 kb on + strand, within Sama_0039at 42.914 kb on + strand, within Sama_0039at 42.915 kb on - strand, within Sama_0039at 42.915 kb on - strand, within Sama_0039at 42.915 kb on - strand, within Sama_0039at 42.915 kb on - strand, within Sama_0039at 42.915 kb on - strand, within Sama_0039at 42.915 kb on - strand, within Sama_0039at 42.915 kb on - strand, within Sama_0039at 42.933 kb on - strand, within Sama_0039at 42.933 kb on - strand, within Sama_0039at 42.952 kb on + strand, within Sama_0039at 43.016 kb on - strand, within Sama_0039at 43.055 kb on - strand, within Sama_0039at 43.084 kb on + strand, within Sama_0039at 43.084 kb on + strand, within Sama_0039at 43.085 kb on - strand, within Sama_0039at 43.086 kb on + strand, within Sama_0039at 43.086 kb on + strand, within Sama_0039at 43.086 kb on + strand, within Sama_0039at 43.086 kb on + strand, within Sama_0039at 43.086 kb on + strand, within Sama_0039at 43.086 kb on + strand, within Sama_0039at 43.086 kb on + strand, within Sama_0039at 43.086 kb on + strand, within Sama_0039at 43.086 kb on + strand, within Sama_0039at 43.086 kb on + strand, within Sama_0039at 43.086 kb on + strand, within Sama_0039at 43.086 kb on + strand, within Sama_0039at 43.087 kb on - strand, within Sama_0039at 43.087 kb on - strand, within Sama_0039at 43.087 kb on - strand, within Sama_0039at 43.087 kb on - strand, within Sama_0039at 43.087 kb on - strand, within Sama_0039at 43.087 kb on - strand, within Sama_0039at 43.087 kb on - strand, within Sama_0039at 43.087 kb on - strand, within Sama_0039at 43.087 kb on - strand, within Sama_0039at 43.087 kb on - strand, within Sama_0039at 43.090 kb on + strand, within Sama_0039at 43.090 kb on + strand, within Sama_0039at 43.090 kb on + strand, within Sama_0039at 43.090 kb on + strand, within Sama_0039at 43.090 kb on + strand, within Sama_0039at 43.090 kb on + strand, within Sama_0039at 43.090 kb on + strand, within Sama_0039at 43.090 kb on + strand, within Sama_0039at 43.091 kb on - strand, within Sama_0039at 43.091 kb on - strand, within Sama_0039at 43.091 kb on - strand, within Sama_0039at 43.091 kb on - strand, within Sama_0039at 43.091 kb on - strand, within Sama_0039at 43.091 kb on - strand, within Sama_0039at 43.091 kb on - strand, within Sama_0039at 43.091 kb on - strand, within Sama_0039at 43.091 kb on - strand, within Sama_0039at 43.094 kb on - strand, within Sama_0039at 43.101 kb on + strand, within Sama_0039at 43.102 kb on - strand, within Sama_0039at 43.108 kb on + strand, within Sama_0039at 43.108 kb on + strand, within Sama_0039at 43.109 kb on - strand, within Sama_0039at 43.109 kb on - strand, within Sama_0039at 43.109 kb on - strand, within Sama_0039at 43.150 kb on + strand, within Sama_0039at 43.150 kb on + strand, within Sama_0039at 43.150 kb on + strand, within Sama_0039at 43.150 kb on + strand, within Sama_0039at 43.160 kb on + strand, within Sama_0039at 43.161 kb on - strand, within Sama_0039at 43.161 kb on - strand, within Sama_0039at 43.161 kb on - strand, within Sama_0039at 43.178 kb on - strand, within Sama_0039at 43.178 kb on - strand, within Sama_0039at 43.214 kb on - strand, within Sama_0039at 43.255 kb on + strandat 43.256 kb on - strandat 43.256 kb on - strandat 43.256 kb on - strandat 43.306 kb on + strandat 43.306 kb on + strandat 43.306 kb on + strandat 43.307 kb on - strandat 43.307 kb on - strandat 43.312 kb on + strandat 43.312 kb on + strandat 43.313 kb on - strandat 43.347 kb on - strandat 43.347 kb on - strandat 43.348 kb on + strandat 43.348 kb on + strandat 43.349 kb on - strandat 43.349 kb on - strandat 43.365 kb on - strandat 43.365 kb on - strandat 43.365 kb on - strandat 43.365 kb on - strandat 43.365 kb on - strandat 43.379 kb on + strandat 43.379 kb on + strandat 43.379 kb on + strandat 43.379 kb on + strandat 43.379 kb on + strandat 43.379 kb on + strandat 43.379 kb on + strandat 43.380 kb on - strandat 43.380 kb on - strandat 43.380 kb on - strandat 43.380 kb on - strandat 44.799 kb on - strandat 44.836 kb on + strandat 44.837 kb on - strandat 44.837 kb on - strandat 44.837 kb on - strandat 44.883 kb on - strandat 44.889 kb on - strandat 44.889 kb on - strandat 45.018 kb on - strand, within Sama_0041at 45.018 kb on - strand, within Sama_0041at 45.018 kb on - strand, within Sama_0041at 45.018 kb on - strand, within Sama_0041at 45.018 kb on - strand, within Sama_0041at 45.018 kb on - strand, within Sama_0041at 45.018 kb on - strand, within Sama_0041at 45.357 kb on + strand, within Sama_0041at 45.358 kb on - strand, within Sama_0041at 45.358 kb on - strand, within Sama_0041at 45.358 kb on - strand, within Sama_0041at 45.513 kb on + strand, within Sama_0041at 45.514 kb on - strand, within Sama_0041at 45.542 kb on - strand, within Sama_0041at 45.542 kb on - strand, within Sama_0041at 45.542 kb on - strand, within Sama_0041at 45.542 kb on - strand, within Sama_0041at 45.575 kb on + strand, within Sama_0041at 45.576 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.675 kb on - strand, within Sama_0041at 45.675 kb on - strand, within Sama_0041at 45.676 kb on + strand, within Sama_0041at 45.677 kb on - strand, within Sama_0041at 45.677 kb on - strand, within Sama_0041at 45.677 kb on - strand, within Sama_0041at 45.725 kb on + strand, within Sama_0041at 45.726 kb on - strand, within Sama_0041at 45.726 kb on - strand, within Sama_0041at 45.726 kb on - strand, within Sama_0041at 45.726 kb on - strand, within Sama_0041at 45.753 kb on + strand, within Sama_0041at 45.753 kb on + strand, within Sama_0041at 45.753 kb on + strand, within Sama_0041at 45.753 kb on + strand, within Sama_0041

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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42,418 - Sama_0039 0.34 +0.7
42,442 + Sama_0039 0.35 +0.2
42,442 + Sama_0039 0.35 -1.0
42,443 - Sama_0039 0.35 +0.2
42,443 - Sama_0039 0.35 +1.4
42,445 + Sama_0039 0.35 -0.3
42,445 + Sama_0039 0.35 +0.6
42,458 + Sama_0039 0.36 +0.1
42,458 + Sama_0039 0.36 +0.4
42,458 + Sama_0039 0.36 +0.2
42,458 + Sama_0039 0.36 -0.4
42,458 + Sama_0039 0.36 -0.1
42,459 - Sama_0039 0.36 -1.1
42,459 - Sama_0039 0.36 +0.7
42,459 - Sama_0039 0.36 +0.1
42,459 - Sama_0039 0.36 +0.6
42,459 - Sama_0039 0.36 +0.3
42,459 - Sama_0039 0.36 +0.2
42,459 - Sama_0039 0.36 +0.0
42,463 + Sama_0039 0.37 -0.2
42,463 + Sama_0039 0.37 +0.8
42,463 + Sama_0039 0.37 +0.5
42,490 + Sama_0039 0.39 -0.9
42,490 + Sama_0039 0.39 -0.5
42,491 - Sama_0039 0.39 +0.8
42,625 + Sama_0039 0.48 -0.2
42,625 + Sama_0039 0.48 -1.1
42,625 + Sama_0039 0.48 +0.2
42,625 + Sama_0039 0.48 -0.1
42,625 + Sama_0039 0.48 +0.1
42,625 + Sama_0039 0.48 +0.1
42,625 + Sama_0039 0.48 -2.0
42,626 - Sama_0039 0.48 +0.6
42,626 - Sama_0039 0.48 +0.0
42,626 - Sama_0039 0.48 -0.1
42,626 - Sama_0039 0.48 -1.6
42,626 - Sama_0039 0.48 -1.4
42,626 - Sama_0039 0.48 -0.3
42,626 - Sama_0039 0.48 -0.1
42,626 - Sama_0039 0.48 -0.4
42,626 - Sama_0039 0.48 -0.1
42,629 + Sama_0039 0.48 +0.1
42,629 + Sama_0039 0.48 -0.1
42,630 - Sama_0039 0.48 +0.4
42,630 - Sama_0039 0.48 -0.3
42,630 - Sama_0039 0.48 +0.8
42,652 + Sama_0039 0.50 +0.1
42,652 + Sama_0039 0.50 -0.7
42,652 + Sama_0039 0.50 -0.5
42,652 + Sama_0039 0.50 +0.3
42,652 + Sama_0039 0.50 -0.0
42,652 + Sama_0039 0.50 -0.2
42,653 - Sama_0039 0.50 -0.7
42,653 - Sama_0039 0.50 +0.4
42,666 - Sama_0039 0.51 +0.1
42,718 - Sama_0039 0.54 -0.1
42,786 + Sama_0039 0.59 +0.2
42,787 - Sama_0039 0.59 +0.1
42,803 + Sama_0039 0.60 +0.0
42,803 + Sama_0039 0.60 +0.4
42,803 + Sama_0039 0.60 +0.7
42,803 + Sama_0039 0.60 -0.8
42,804 - Sama_0039 0.60 +1.4
42,804 - Sama_0039 0.60 -1.2
42,804 - Sama_0039 0.60 -0.7
42,819 + Sama_0039 0.61 -0.0
42,820 - Sama_0039 0.61 -0.0
42,820 - Sama_0039 0.61 +0.7
42,820 - Sama_0039 0.61 +1.3
42,914 + Sama_0039 0.68 +0.1
42,914 + Sama_0039 0.68 -0.1
42,914 + Sama_0039 0.68 +0.6
42,914 + Sama_0039 0.68 -1.3
42,914 + Sama_0039 0.68 -0.0
42,914 + Sama_0039 0.68 +0.9
42,914 + Sama_0039 0.68 -0.6
42,914 + Sama_0039 0.68 -0.2
42,914 + Sama_0039 0.68 +0.5
42,915 - Sama_0039 0.68 +0.6
42,915 - Sama_0039 0.68 +0.6
42,915 - Sama_0039 0.68 +1.0
42,915 - Sama_0039 0.68 -0.6
42,915 - Sama_0039 0.68 -0.1
42,915 - Sama_0039 0.68 +0.0
42,915 - Sama_0039 0.68 -0.4
42,933 - Sama_0039 0.69 +0.6
42,933 - Sama_0039 0.69 -0.5
42,952 + Sama_0039 0.71 +1.0
43,016 - Sama_0039 0.75 -1.0
43,055 - Sama_0039 0.78 -0.5
43,084 + Sama_0039 0.80 +0.1
43,084 + Sama_0039 0.80 -0.5
43,085 - Sama_0039 0.80 +0.2
43,086 + Sama_0039 0.80 +0.7
43,086 + Sama_0039 0.80 +0.4
43,086 + Sama_0039 0.80 +0.2
43,086 + Sama_0039 0.80 +0.5
43,086 + Sama_0039 0.80 -0.1
43,086 + Sama_0039 0.80 -0.1
43,086 + Sama_0039 0.80 -0.2
43,086 + Sama_0039 0.80 +0.1
43,086 + Sama_0039 0.80 +0.0
43,086 + Sama_0039 0.80 -0.1
43,086 + Sama_0039 0.80 +0.3
43,086 + Sama_0039 0.80 -0.8
43,087 - Sama_0039 0.80 +0.6
43,087 - Sama_0039 0.80 +1.0
43,087 - Sama_0039 0.80 -2.3
43,087 - Sama_0039 0.80 -0.6
43,087 - Sama_0039 0.80 +1.5
43,087 - Sama_0039 0.80 -0.2
43,087 - Sama_0039 0.80 -0.3
43,087 - Sama_0039 0.80 +0.7
43,087 - Sama_0039 0.80 +0.7
43,087 - Sama_0039 0.80 +0.4
43,090 + Sama_0039 0.80 +0.8
43,090 + Sama_0039 0.80 +0.7
43,090 + Sama_0039 0.80 +0.8
43,090 + Sama_0039 0.80 -0.5
43,090 + Sama_0039 0.80 -0.5
43,090 + Sama_0039 0.80 -0.5
43,090 + Sama_0039 0.80 -0.4
43,090 + Sama_0039 0.80 +0.2
43,091 - Sama_0039 0.80 +0.4
43,091 - Sama_0039 0.80 +0.6
43,091 - Sama_0039 0.80 +0.4
43,091 - Sama_0039 0.80 +0.6
43,091 - Sama_0039 0.80 +0.6
43,091 - Sama_0039 0.80 -0.0
43,091 - Sama_0039 0.80 -1.7
43,091 - Sama_0039 0.80 +1.2
43,091 - Sama_0039 0.80 +0.2
43,094 - Sama_0039 0.80 -0.2
43,101 + Sama_0039 0.81 +0.0
43,102 - Sama_0039 0.81 -0.2
43,108 + Sama_0039 0.81 +0.8
43,108 + Sama_0039 0.81 +0.5
43,109 - Sama_0039 0.81 -0.8
43,109 - Sama_0039 0.81 +0.4
43,109 - Sama_0039 0.81 -1.3
43,150 + Sama_0039 0.84 -0.5
43,150 + Sama_0039 0.84 +0.5
43,150 + Sama_0039 0.84 -0.2
43,150 + Sama_0039 0.84 +1.1
43,160 + Sama_0039 0.85 +2.2
43,161 - Sama_0039 0.85 +1.7
43,161 - Sama_0039 0.85 +0.0
43,161 - Sama_0039 0.85 -0.1
43,178 - Sama_0039 0.86 -0.3
43,178 - Sama_0039 0.86 -2.1
43,214 - Sama_0039 0.89 +0.1
43,255 + +0.9
43,256 - +0.7
43,256 - +0.8
43,256 - -0.5
43,306 + -0.1
43,306 + +0.2
43,306 + +0.9
43,307 - +1.5
43,307 - +0.1
43,312 + +0.6
43,312 + -0.5
43,313 - -0.1
43,347 - -0.7
43,347 - +0.0
43,348 + +0.8
43,348 + -0.5
43,349 - -0.2
43,349 - +0.4
43,365 - +0.4
43,365 - -0.1
43,365 - -0.5
43,365 - +0.6
43,365 - -0.8
43,379 + +0.3
43,379 + -1.3
43,379 + +0.4
43,379 + -0.7
43,379 + -0.9
43,379 + -0.1
43,379 + -0.3
43,380 - -0.8
43,380 - -2.2
43,380 - +0.1
43,380 - -0.1
44,799 - -0.6
44,836 + +1.2
44,837 - -0.9
44,837 - -2.0
44,837 - -0.7
44,883 - -1.1
44,889 - -2.0
44,889 - -0.3
45,018 - Sama_0041 0.17 -1.5
45,018 - Sama_0041 0.17 -0.5
45,018 - Sama_0041 0.17 -1.3
45,018 - Sama_0041 0.17 -1.5
45,018 - Sama_0041 0.17 -1.1
45,018 - Sama_0041 0.17 -2.7
45,018 - Sama_0041 0.17 -1.8
45,357 + Sama_0041 0.43 +2.1
45,358 - Sama_0041 0.43 -1.7
45,358 - Sama_0041 0.43 +0.3
45,358 - Sama_0041 0.43 -3.4
45,513 + Sama_0041 0.55 -1.1
45,514 - Sama_0041 0.55 -1.1
45,542 - Sama_0041 0.57 -2.0
45,542 - Sama_0041 0.57 -2.4
45,542 - Sama_0041 0.57 -1.0
45,542 - Sama_0041 0.57 -2.3
45,575 + Sama_0041 0.60 +0.5
45,576 - Sama_0041 0.60 -1.5
45,610 - Sama_0041 0.63 -0.2
45,610 - Sama_0041 0.63 -0.1
45,610 - Sama_0041 0.63 -0.5
45,610 - Sama_0041 0.63 -1.0
45,610 - Sama_0041 0.63 -2.3
45,610 - Sama_0041 0.63 -0.2
45,610 - Sama_0041 0.63 -0.8
45,675 - Sama_0041 0.68 -1.8
45,675 - Sama_0041 0.68 -2.0
45,676 + Sama_0041 0.68 -0.3
45,677 - Sama_0041 0.68 -1.4
45,677 - Sama_0041 0.68 -1.3
45,677 - Sama_0041 0.68 -1.2
45,725 + Sama_0041 0.72 -0.5
45,726 - Sama_0041 0.72 -3.0
45,726 - Sama_0041 0.72 -0.5
45,726 - Sama_0041 0.72 -1.8
45,726 - Sama_0041 0.72 -0.5
45,753 + Sama_0041 0.74 -0.7
45,753 + Sama_0041 0.74 -1.1
45,753 + Sama_0041 0.74 -1.0
45,753 + Sama_0041 0.74 -1.5

Or see this region's nucleotide sequence