Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0866

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0864 and Psest_0865 are separated by 11 nucleotidesPsest_0865 and Psest_0866 are separated by 39 nucleotidesPsest_0866 and Psest_0867 are separated by 134 nucleotidesPsest_0867 and Psest_0868 are separated by 45 nucleotides Psest_0864: Psest_0864 - maltose ABC transporter, permease component 1 (MalF) (from data), at 938,104 to 939,669 _0864 Psest_0865: Psest_0865 - maltose ABC transporter, permease component 2 (MalG) (from data), at 939,681 to 940,571 _0865 Psest_0866: Psest_0866 - ATP-dependent transcriptional regulator, at 940,611 to 943,421 _0866 Psest_0867: Psest_0867 - hypothetical protein, at 943,556 to 943,984 _0867 Psest_0868: Psest_0868 - Glutathione S-transferase, at 944,030 to 944,653 _0868 Position (kb) 940 941 942 943 944Strain fitness (log2 ratio) -2 -1 0 1 2 3at 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.667 kb on + strandat 939.667 kb on + strandat 939.667 kb on + strandat 939.667 kb on + strandat 939.668 kb on - strandat 939.668 kb on - strandat 939.668 kb on - strandat 939.668 kb on - strandat 940.016 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.199 kb on + strand, within Psest_0865at 940.199 kb on + strand, within Psest_0865at 940.199 kb on + strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.218 kb on + strand, within Psest_0865at 940.219 kb on - strand, within Psest_0865at 940.219 kb on - strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.452 kb on + strand, within Psest_0865at 940.452 kb on + strand, within Psest_0865at 940.452 kb on + strand, within Psest_0865at 940.453 kb on - strand, within Psest_0865at 940.453 kb on - strand, within Psest_0865at 940.577 kb on + strandat 940.577 kb on + strandat 940.795 kb on + strandat 940.795 kb on + strandat 941.454 kb on + strand, within Psest_0866at 941.454 kb on + strand, within Psest_0866at 941.454 kb on + strand, within Psest_0866at 941.454 kb on + strand, within Psest_0866at 941.646 kb on + strand, within Psest_0866at 941.647 kb on - strand, within Psest_0866at 941.647 kb on - strand, within Psest_0866at 941.652 kb on + strand, within Psest_0866at 941.652 kb on + strand, within Psest_0866at 941.652 kb on + strand, within Psest_0866at 941.652 kb on + strand, within Psest_0866at 941.848 kb on - strand, within Psest_0866at 942.237 kb on + strand, within Psest_0866at 942.348 kb on + strand, within Psest_0866at 942.349 kb on - strand, within Psest_0866at 942.349 kb on - strand, within Psest_0866at 942.375 kb on + strand, within Psest_0866at 942.376 kb on - strand, within Psest_0866at 942.424 kb on - strand, within Psest_0866at 942.424 kb on - strand, within Psest_0866at 942.443 kb on - strand, within Psest_0866at 942.568 kb on - strand, within Psest_0866at 942.601 kb on - strand, within Psest_0866at 943.342 kb on - strandat 943.342 kb on - strandat 943.342 kb on - strandat 943.420 kb on - strandat 943.465 kb on - strandat 943.540 kb on - strandat 943.605 kb on - strand, within Psest_0867at 943.716 kb on + strand, within Psest_0867at 943.717 kb on - strand, within Psest_0867at 943.957 kb on - strandat 943.957 kb on - strandat 944.325 kb on + strand, within Psest_0868at 944.325 kb on + strand, within Psest_0868at 944.325 kb on + strand, within Psest_0868at 944.325 kb on + strand, within Psest_0868at 944.325 kb on + strand, within Psest_0868at 944.326 kb on - strand, within Psest_0868at 944.326 kb on - strand, within Psest_0868at 944.328 kb on + strand, within Psest_0868

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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939,665 + +1.2
939,665 + +1.5
939,665 + +0.7
939,665 + +0.0
939,665 + -0.6
939,665 + -0.1
939,665 + +2.2
939,665 + +0.6
939,665 + +2.8
939,666 - -0.1
939,666 - +0.6
939,666 - +0.1
939,666 - +0.2
939,666 - -1.5
939,666 - -0.9
939,666 - -0.5
939,666 - +1.6
939,667 + +0.2
939,667 + -1.2
939,667 + -0.1
939,667 + +0.6
939,668 - +0.6
939,668 - -1.3
939,668 - -0.7
939,668 - -0.4
940,016 + Psest_0865 0.38 -0.3
940,101 + Psest_0865 0.47 +1.8
940,101 + Psest_0865 0.47 -1.5
940,101 + Psest_0865 0.47 +0.2
940,101 + Psest_0865 0.47 +0.6
940,101 + Psest_0865 0.47 +0.6
940,101 + Psest_0865 0.47 -1.0
940,101 + Psest_0865 0.47 +1.2
940,101 + Psest_0865 0.47 -0.1
940,102 - Psest_0865 0.47 -1.4
940,102 - Psest_0865 0.47 +1.2
940,102 - Psest_0865 0.47 -0.7
940,102 - Psest_0865 0.47 +1.2
940,102 - Psest_0865 0.47 +1.2
940,102 - Psest_0865 0.47 -0.5
940,102 - Psest_0865 0.47 -0.3
940,102 - Psest_0865 0.47 -0.5
940,102 - Psest_0865 0.47 +1.2
940,199 + Psest_0865 0.58 -0.1
940,199 + Psest_0865 0.58 -0.8
940,199 + Psest_0865 0.58 +1.2
940,200 - Psest_0865 0.58 -0.9
940,200 - Psest_0865 0.58 -0.3
940,200 - Psest_0865 0.58 -0.5
940,200 - Psest_0865 0.58 -0.6
940,200 - Psest_0865 0.58 -1.7
940,218 + Psest_0865 0.60 +0.6
940,219 - Psest_0865 0.60 +0.9
940,219 - Psest_0865 0.60 -0.6
940,434 + Psest_0865 0.85 -1.9
940,434 + Psest_0865 0.85 -0.1
940,434 + Psest_0865 0.85 -0.1
940,434 + Psest_0865 0.85 +1.5
940,434 + Psest_0865 0.85 -0.4
940,434 + Psest_0865 0.85 +2.8
940,434 + Psest_0865 0.85 +1.2
940,434 + Psest_0865 0.85 +1.2
940,434 + Psest_0865 0.85 +1.2
940,435 - Psest_0865 0.85 +0.2
940,435 - Psest_0865 0.85 +2.4
940,435 - Psest_0865 0.85 +0.1
940,435 - Psest_0865 0.85 -0.8
940,435 - Psest_0865 0.85 +0.6
940,452 + Psest_0865 0.87 +0.9
940,452 + Psest_0865 0.87 +0.8
940,452 + Psest_0865 0.87 -0.1
940,453 - Psest_0865 0.87 +1.9
940,453 - Psest_0865 0.87 -0.8
940,577 + +0.2
940,577 + +0.8
940,795 + -0.9
940,795 + -0.6
941,454 + Psest_0866 0.30 -0.6
941,454 + Psest_0866 0.30 -1.6
941,454 + Psest_0866 0.30 -2.1
941,454 + Psest_0866 0.30 -1.0
941,646 + Psest_0866 0.37 +0.2
941,647 - Psest_0866 0.37 +0.6
941,647 - Psest_0866 0.37 +0.6
941,652 + Psest_0866 0.37 +0.6
941,652 + Psest_0866 0.37 -0.6
941,652 + Psest_0866 0.37 -0.6
941,652 + Psest_0866 0.37 +0.2
941,848 - Psest_0866 0.44 -0.9
942,237 + Psest_0866 0.58 +1.4
942,348 + Psest_0866 0.62 -0.3
942,349 - Psest_0866 0.62 +0.8
942,349 - Psest_0866 0.62 -0.1
942,375 + Psest_0866 0.63 -1.0
942,376 - Psest_0866 0.63 -0.5
942,424 - Psest_0866 0.64 -0.4
942,424 - Psest_0866 0.64 +0.2
942,443 - Psest_0866 0.65 -2.1
942,568 - Psest_0866 0.70 -0.4
942,601 - Psest_0866 0.71 -0.1
943,342 - +0.6
943,342 - -0.8
943,342 - -0.6
943,420 - +0.6
943,465 - -1.1
943,540 - +1.6
943,605 - Psest_0867 0.11 -0.1
943,716 + Psest_0867 0.37 -0.1
943,717 - Psest_0867 0.38 -1.4
943,957 - +1.8
943,957 - -0.2
944,325 + Psest_0868 0.47 -0.6
944,325 + Psest_0868 0.47 +0.0
944,325 + Psest_0868 0.47 -0.3
944,325 + Psest_0868 0.47 -0.4
944,325 + Psest_0868 0.47 -0.5
944,326 - Psest_0868 0.47 -0.4
944,326 - Psest_0868 0.47 +1.9
944,328 + Psest_0868 0.48 +0.4

Or see this region's nucleotide sequence