Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0829 and Psest_0830 are separated by 67 nucleotides Psest_0830 and Psest_0831 are separated by 136 nucleotides Psest_0831 and Psest_0832 overlap by 4 nucleotides Psest_0832 and Psest_0833 are separated by 145 nucleotides
Psest_0829: Psest_0829 - hypothetical protein, at 901,813 to 902,004
_0829
Psest_0830: Psest_0830 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 902,072 to 902,755
_0830
Psest_0831: Psest_0831 - hypothetical protein, at 902,892 to 903,410
_0831
Psest_0832: Psest_0832 - iron-sulfur cluster repair di-iron protein, at 903,407 to 904,126
_0832
Psest_0833: Psest_0833 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 904,272 to 905,801
_0833
Position (kb) 902
903
904 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 902.131 kb on + strand at 902.132 kb on - strand at 902.273 kb on + strand, within Psest_0830 at 902.273 kb on + strand, within Psest_0830 at 902.273 kb on + strand, within Psest_0830 at 902.273 kb on + strand, within Psest_0830 at 902.274 kb on - strand, within Psest_0830 at 902.278 kb on - strand, within Psest_0830 at 902.409 kb on + strand, within Psest_0830 at 902.409 kb on + strand, within Psest_0830 at 902.409 kb on + strand, within Psest_0830 at 902.409 kb on + strand, within Psest_0830 at 902.410 kb on - strand, within Psest_0830 at 902.410 kb on - strand, within Psest_0830 at 902.410 kb on - strand, within Psest_0830 at 902.430 kb on + strand, within Psest_0830 at 902.431 kb on - strand, within Psest_0830 at 902.469 kb on + strand, within Psest_0830 at 902.469 kb on + strand, within Psest_0830 at 902.469 kb on + strand, within Psest_0830 at 902.469 kb on + strand, within Psest_0830 at 902.469 kb on + strand, within Psest_0830 at 902.470 kb on - strand, within Psest_0830 at 902.470 kb on - strand, within Psest_0830 at 902.470 kb on - strand, within Psest_0830 at 902.470 kb on - strand, within Psest_0830 at 902.470 kb on - strand, within Psest_0830 at 902.566 kb on - strand, within Psest_0830 at 902.595 kb on + strand, within Psest_0830 at 902.595 kb on + strand, within Psest_0830 at 902.595 kb on + strand, within Psest_0830 at 902.595 kb on + strand, within Psest_0830 at 902.595 kb on + strand, within Psest_0830 at 902.596 kb on - strand, within Psest_0830 at 902.596 kb on - strand, within Psest_0830 at 902.596 kb on - strand, within Psest_0830 at 902.596 kb on - strand, within Psest_0830 at 902.596 kb on - strand, within Psest_0830 at 902.739 kb on - strand at 902.809 kb on - strand at 902.878 kb on - strand at 903.098 kb on - strand, within Psest_0831 at 903.400 kb on + strand at 903.400 kb on + strand at 903.400 kb on + strand at 903.485 kb on + strand, within Psest_0832 at 903.485 kb on + strand, within Psest_0832 at 903.485 kb on + strand, within Psest_0832 at 903.485 kb on + strand, within Psest_0832 at 903.485 kb on + strand, within Psest_0832 at 903.485 kb on + strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.562 kb on + strand, within Psest_0832 at 903.562 kb on + strand, within Psest_0832 at 903.562 kb on + strand, within Psest_0832 at 903.586 kb on + strand, within Psest_0832 at 903.645 kb on + strand, within Psest_0832 at 903.888 kb on + strand, within Psest_0832 at 904.017 kb on - strand, within Psest_0832 at 904.017 kb on - strand, within Psest_0832 at 904.017 kb on - strand, within Psest_0832 at 904.058 kb on + strand at 904.059 kb on - strand at 904.059 kb on - strand at 904.168 kb on - strand at 904.239 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 902,131 + -0.8 902,132 - +0.4 902,273 + Psest_0830 0.29 -0.8 902,273 + Psest_0830 0.29 +0.3 902,273 + Psest_0830 0.29 -0.4 902,273 + Psest_0830 0.29 -0.7 902,274 - Psest_0830 0.30 +0.6 902,278 - Psest_0830 0.30 -1.2 902,409 + Psest_0830 0.49 -0.8 902,409 + Psest_0830 0.49 -0.7 902,409 + Psest_0830 0.49 +1.1 902,409 + Psest_0830 0.49 -0.7 902,410 - Psest_0830 0.49 -0.1 902,410 - Psest_0830 0.49 -0.4 902,410 - Psest_0830 0.49 +0.2 902,430 + Psest_0830 0.52 +0.3 902,431 - Psest_0830 0.52 +0.2 902,469 + Psest_0830 0.58 -0.0 902,469 + Psest_0830 0.58 -1.6 902,469 + Psest_0830 0.58 +2.2 902,469 + Psest_0830 0.58 -0.1 902,469 + Psest_0830 0.58 -1.0 902,470 - Psest_0830 0.58 -0.6 902,470 - Psest_0830 0.58 -0.2 902,470 - Psest_0830 0.58 +1.5 902,470 - Psest_0830 0.58 -0.3 902,470 - Psest_0830 0.58 +0.4 902,566 - Psest_0830 0.72 -0.5 902,595 + Psest_0830 0.76 +1.2 902,595 + Psest_0830 0.76 +0.9 902,595 + Psest_0830 0.76 -0.8 902,595 + Psest_0830 0.76 -0.4 902,595 + Psest_0830 0.76 -1.3 902,596 - Psest_0830 0.77 +2.2 902,596 - Psest_0830 0.77 -1.2 902,596 - Psest_0830 0.77 +0.2 902,596 - Psest_0830 0.77 +0.3 902,596 - Psest_0830 0.77 -0.4 902,739 - +1.6 902,809 - -0.8 902,878 - +0.9 903,098 - Psest_0831 0.40 -2.1 903,400 + -0.4 903,400 + -0.9 903,400 + +1.2 903,485 + Psest_0832 0.11 +1.5 903,485 + Psest_0832 0.11 +1.2 903,485 + Psest_0832 0.11 -1.3 903,485 + Psest_0832 0.11 +0.6 903,485 + Psest_0832 0.11 -2.5 903,485 + Psest_0832 0.11 +0.0 903,486 - Psest_0832 0.11 +0.6 903,486 - Psest_0832 0.11 -1.0 903,486 - Psest_0832 0.11 +0.6 903,486 - Psest_0832 0.11 -1.8 903,486 - Psest_0832 0.11 -0.1 903,486 - Psest_0832 0.11 -1.2 903,486 - Psest_0832 0.11 +3.2 903,486 - Psest_0832 0.11 -1.0 903,486 - Psest_0832 0.11 +0.2 903,486 - Psest_0832 0.11 +0.2 903,486 - Psest_0832 0.11 +1.1 903,486 - Psest_0832 0.11 +0.6 903,486 - Psest_0832 0.11 -0.1 903,486 - Psest_0832 0.11 +2.4 903,562 + Psest_0832 0.22 +2.0 903,562 + Psest_0832 0.22 +0.8 903,562 + Psest_0832 0.22 -1.0 903,586 + Psest_0832 0.25 +1.2 903,645 + Psest_0832 0.33 -0.9 903,888 + Psest_0832 0.67 +0.9 904,017 - Psest_0832 0.85 -0.1 904,017 - Psest_0832 0.85 +0.5 904,017 - Psest_0832 0.85 -0.5 904,058 + -0.8 904,059 - -0.2 904,059 - -0.1 904,168 - -0.6 904,239 - +0.5
Or see this region's nucleotide sequence