Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0080

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0078 and Psest_0079 are separated by 94 nucleotidesPsest_0079 and Psest_0080 are separated by 143 nucleotidesPsest_0080 and Psest_0081 are separated by 217 nucleotides Psest_0078: Psest_0078 - hypothetical protein, at 79,486 to 79,899 _0078 Psest_0079: Psest_0079 - hypothetical protein, at 79,994 to 80,419 _0079 Psest_0080: Psest_0080 - Predicted aminopeptidase, at 80,563 to 81,621 _0080 Psest_0081: Psest_0081 - hypothetical protein, at 81,839 to 83,008 _0081 Position (kb) 80 81 82Strain fitness (log2 ratio) -2 -1 0 1 2 3at 79.733 kb on + strand, within Psest_0078at 79.734 kb on - strand, within Psest_0078at 80.046 kb on + strand, within Psest_0079at 80.046 kb on + strand, within Psest_0079at 80.046 kb on + strand, within Psest_0079at 80.046 kb on + strand, within Psest_0079at 80.046 kb on + strand, within Psest_0079at 80.046 kb on + strand, within Psest_0079at 80.047 kb on - strand, within Psest_0079at 80.047 kb on - strand, within Psest_0079at 80.061 kb on + strand, within Psest_0079at 80.061 kb on + strand, within Psest_0079at 80.062 kb on - strand, within Psest_0079at 80.062 kb on - strand, within Psest_0079at 80.137 kb on - strand, within Psest_0079at 80.246 kb on + strand, within Psest_0079at 80.246 kb on + strand, within Psest_0079at 80.512 kb on + strandat 80.512 kb on + strandat 80.512 kb on + strandat 80.513 kb on - strandat 80.513 kb on - strandat 80.650 kb on + strandat 80.650 kb on + strandat 80.650 kb on + strandat 80.650 kb on + strandat 80.651 kb on - strandat 80.651 kb on - strandat 80.653 kb on + strandat 80.653 kb on + strandat 80.654 kb on - strandat 80.654 kb on - strandat 80.654 kb on - strandat 80.765 kb on + strand, within Psest_0080at 80.766 kb on - strand, within Psest_0080at 80.768 kb on + strand, within Psest_0080at 80.768 kb on + strand, within Psest_0080at 80.768 kb on + strand, within Psest_0080at 80.768 kb on + strand, within Psest_0080at 80.768 kb on + strand, within Psest_0080at 80.768 kb on + strand, within Psest_0080at 80.768 kb on + strand, within Psest_0080at 80.769 kb on - strand, within Psest_0080at 80.769 kb on - strand, within Psest_0080at 80.769 kb on - strand, within Psest_0080at 80.769 kb on - strand, within Psest_0080at 80.830 kb on + strand, within Psest_0080at 80.831 kb on - strand, within Psest_0080at 80.831 kb on - strand, within Psest_0080at 80.852 kb on - strand, within Psest_0080at 80.852 kb on - strand, within Psest_0080at 80.852 kb on - strand, within Psest_0080at 80.852 kb on - strand, within Psest_0080at 80.945 kb on - strand, within Psest_0080at 81.136 kb on + strand, within Psest_0080at 81.136 kb on + strand, within Psest_0080at 81.137 kb on - strand, within Psest_0080at 81.137 kb on - strand, within Psest_0080at 81.170 kb on - strand, within Psest_0080at 81.482 kb on - strand, within Psest_0080at 81.512 kb on + strand, within Psest_0080at 81.512 kb on + strand, within Psest_0080at 81.768 kb on + strandat 81.769 kb on - strandat 81.770 kb on + strandat 81.770 kb on + strandat 81.770 kb on + strandat 81.770 kb on + strandat 81.771 kb on - strandat 81.771 kb on - strandat 81.771 kb on - strandat 81.771 kb on - strandat 81.771 kb on - strandat 81.771 kb on - strandat 81.771 kb on - strandat 81.771 kb on - strandat 81.771 kb on - strandat 81.771 kb on - strandat 82.214 kb on + strand, within Psest_0081at 82.313 kb on + strand, within Psest_0081at 82.314 kb on - strand, within Psest_0081at 82.314 kb on - strand, within Psest_0081at 82.314 kb on - strand, within Psest_0081at 82.385 kb on + strand, within Psest_0081at 82.385 kb on + strand, within Psest_0081at 82.386 kb on - strand, within Psest_0081at 82.386 kb on - strand, within Psest_0081at 82.386 kb on - strand, within Psest_0081at 82.463 kb on + strand, within Psest_0081at 82.463 kb on + strand, within Psest_0081at 82.463 kb on + strand, within Psest_0081at 82.463 kb on + strand, within Psest_0081at 82.464 kb on - strand, within Psest_0081at 82.464 kb on - strand, within Psest_0081at 82.464 kb on - strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.466 kb on + strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.467 kb on - strand, within Psest_0081at 82.514 kb on + strand, within Psest_0081at 82.515 kb on - strand, within Psest_0081at 82.515 kb on - strand, within Psest_0081at 82.515 kb on - strand, within Psest_0081at 82.589 kb on - strand, within Psest_0081

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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79,733 + Psest_0078 0.60 -0.7
79,734 - Psest_0078 0.60 +0.7
80,046 + Psest_0079 0.12 +1.6
80,046 + Psest_0079 0.12 +0.6
80,046 + Psest_0079 0.12 +3.3
80,046 + Psest_0079 0.12 -0.3
80,046 + Psest_0079 0.12 -0.5
80,046 + Psest_0079 0.12 +0.5
80,047 - Psest_0079 0.12 +0.7
80,047 - Psest_0079 0.12 +1.6
80,061 + Psest_0079 0.16 -0.0
80,061 + Psest_0079 0.16 +2.3
80,062 - Psest_0079 0.16 +0.8
80,062 - Psest_0079 0.16 +0.7
80,137 - Psest_0079 0.34 -0.1
80,246 + Psest_0079 0.59 +0.0
80,246 + Psest_0079 0.59 +0.3
80,512 + +0.5
80,512 + -0.1
80,512 + -1.4
80,513 - +0.3
80,513 - -1.1
80,650 + +0.4
80,650 + -0.6
80,650 + -1.0
80,650 + +2.3
80,651 - +0.5
80,651 - -0.9
80,653 + -0.4
80,653 + -0.3
80,654 - -2.3
80,654 - +0.0
80,654 - -0.5
80,765 + Psest_0080 0.19 +0.2
80,766 - Psest_0080 0.19 +0.4
80,768 + Psest_0080 0.19 -0.8
80,768 + Psest_0080 0.19 -0.2
80,768 + Psest_0080 0.19 +2.3
80,768 + Psest_0080 0.19 -0.2
80,768 + Psest_0080 0.19 -0.7
80,768 + Psest_0080 0.19 +0.2
80,768 + Psest_0080 0.19 -1.0
80,769 - Psest_0080 0.19 -0.3
80,769 - Psest_0080 0.19 -1.1
80,769 - Psest_0080 0.19 -0.5
80,769 - Psest_0080 0.19 -0.7
80,830 + Psest_0080 0.25 -0.6
80,831 - Psest_0080 0.25 +2.3
80,831 - Psest_0080 0.25 -0.7
80,852 - Psest_0080 0.27 -1.0
80,852 - Psest_0080 0.27 -0.2
80,852 - Psest_0080 0.27 +1.1
80,852 - Psest_0080 0.27 +0.5
80,945 - Psest_0080 0.36 +0.3
81,136 + Psest_0080 0.54 +0.3
81,136 + Psest_0080 0.54 -0.3
81,137 - Psest_0080 0.54 +1.2
81,137 - Psest_0080 0.54 -1.3
81,170 - Psest_0080 0.57 -0.3
81,482 - Psest_0080 0.87 +0.0
81,512 + Psest_0080 0.90 -0.3
81,512 + Psest_0080 0.90 -0.7
81,768 + -0.1
81,769 - +0.7
81,770 + -0.1
81,770 + -0.7
81,770 + -0.3
81,770 + -0.8
81,771 - -0.3
81,771 - +0.6
81,771 - -1.0
81,771 - +2.3
81,771 - -0.8
81,771 - -0.3
81,771 - -1.7
81,771 - +0.7
81,771 - +0.6
81,771 - +2.9
82,214 + Psest_0081 0.32 -0.3
82,313 + Psest_0081 0.41 +0.1
82,314 - Psest_0081 0.41 -0.6
82,314 - Psest_0081 0.41 -1.9
82,314 - Psest_0081 0.41 -0.5
82,385 + Psest_0081 0.47 +0.1
82,385 + Psest_0081 0.47 -0.6
82,386 - Psest_0081 0.47 -0.3
82,386 - Psest_0081 0.47 +0.3
82,386 - Psest_0081 0.47 -0.1
82,463 + Psest_0081 0.53 +0.2
82,463 + Psest_0081 0.53 +0.7
82,463 + Psest_0081 0.53 +1.1
82,463 + Psest_0081 0.53 +0.7
82,464 - Psest_0081 0.53 -0.7
82,464 - Psest_0081 0.53 -0.5
82,464 - Psest_0081 0.53 +0.3
82,466 + Psest_0081 0.54 +0.7
82,466 + Psest_0081 0.54 +0.0
82,466 + Psest_0081 0.54 -0.2
82,466 + Psest_0081 0.54 +0.2
82,466 + Psest_0081 0.54 -0.2
82,466 + Psest_0081 0.54 -0.3
82,466 + Psest_0081 0.54 -0.9
82,466 + Psest_0081 0.54 +0.3
82,466 + Psest_0081 0.54 +0.0
82,466 + Psest_0081 0.54 +1.3
82,466 + Psest_0081 0.54 -1.8
82,466 + Psest_0081 0.54 -0.5
82,466 + Psest_0081 0.54 +2.3
82,466 + Psest_0081 0.54 -0.2
82,466 + Psest_0081 0.54 +0.6
82,466 + Psest_0081 0.54 -1.5
82,466 + Psest_0081 0.54 +0.3
82,466 + Psest_0081 0.54 -0.7
82,467 - Psest_0081 0.54 -0.8
82,467 - Psest_0081 0.54 +0.2
82,467 - Psest_0081 0.54 +2.3
82,467 - Psest_0081 0.54 +0.6
82,467 - Psest_0081 0.54 +0.3
82,467 - Psest_0081 0.54 -0.4
82,467 - Psest_0081 0.54 +1.3
82,467 - Psest_0081 0.54 -0.3
82,467 - Psest_0081 0.54 +0.1
82,467 - Psest_0081 0.54 -1.1
82,467 - Psest_0081 0.54 +0.2
82,467 - Psest_0081 0.54 -0.2
82,467 - Psest_0081 0.54 +2.3
82,467 - Psest_0081 0.54 -0.5
82,467 - Psest_0081 0.54 -1.5
82,467 - Psest_0081 0.54 +2.3
82,467 - Psest_0081 0.54 +1.0
82,467 - Psest_0081 0.54 -1.0
82,467 - Psest_0081 0.54 +0.3
82,467 - Psest_0081 0.54 -0.5
82,467 - Psest_0081 0.54 -0.7
82,467 - Psest_0081 0.54 +0.5
82,467 - Psest_0081 0.54 +0.4
82,467 - Psest_0081 0.54 +1.7
82,514 + Psest_0081 0.58 -0.2
82,515 - Psest_0081 0.58 -0.2
82,515 - Psest_0081 0.58 +1.3
82,515 - Psest_0081 0.58 +2.1
82,589 - Psest_0081 0.64 +0.0

Or see this region's nucleotide sequence