Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0515 and Psest_0516 are separated by 48 nucleotides Psest_0516 and Psest_0517 are separated by 66 nucleotides Psest_0517 and Psest_0518 overlap by 1 nucleotides
Psest_0515: Psest_0515 - rare lipoprotein A, at 568,809 to 569,801
_0515
Psest_0516: Psest_0516 - D-alanyl-D-alanine carboxypeptidase, at 569,850 to 571,007
_0516
Psest_0517: Psest_0517 - Uncharacterized conserved protein, at 571,074 to 571,355
_0517
Psest_0518: Psest_0518 - lipoate-protein ligase B, at 571,355 to 572,011
_0518
Psest_0519: Psest_0519 - lipoate synthase, at 572,004 to 572,981
_0519
Position (kb) 569
570
571
572 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 569.025 kb on + strand, within Psest_0515 at 569.026 kb on - strand, within Psest_0515 at 569.026 kb on - strand, within Psest_0515 at 569.026 kb on - strand, within Psest_0515 at 569.040 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.061 kb on + strand, within Psest_0515 at 569.160 kb on + strand, within Psest_0515 at 569.211 kb on + strand, within Psest_0515 at 569.211 kb on + strand, within Psest_0515 at 569.302 kb on + strand, within Psest_0515 at 569.674 kb on + strand, within Psest_0515 at 569.675 kb on - strand, within Psest_0515 at 569.675 kb on - strand, within Psest_0515 at 569.818 kb on - strand at 569.818 kb on - strand at 569.818 kb on - strand at 569.826 kb on + strand at 569.826 kb on + strand at 569.827 kb on - strand at 569.881 kb on + strand at 569.881 kb on + strand at 569.882 kb on - strand at 569.882 kb on - strand at 569.882 kb on - strand at 569.996 kb on - strand, within Psest_0516 at 570.060 kb on + strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.061 kb on - strand, within Psest_0516 at 570.152 kb on + strand, within Psest_0516 at 570.153 kb on - strand, within Psest_0516 at 570.153 kb on - strand, within Psest_0516 at 570.284 kb on + strand, within Psest_0516 at 570.284 kb on + strand, within Psest_0516 at 570.284 kb on + strand, within Psest_0516 at 570.285 kb on - strand, within Psest_0516 at 570.285 kb on - strand, within Psest_0516 at 570.285 kb on - strand, within Psest_0516 at 570.285 kb on - strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.408 kb on + strand, within Psest_0516 at 570.409 kb on - strand, within Psest_0516 at 570.409 kb on - strand, within Psest_0516 at 570.409 kb on - strand, within Psest_0516 at 570.409 kb on - strand, within Psest_0516 at 570.435 kb on + strand, within Psest_0516 at 570.435 kb on + strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.436 kb on - strand, within Psest_0516 at 570.657 kb on + strand, within Psest_0516 at 570.658 kb on - strand, within Psest_0516 at 570.690 kb on + strand, within Psest_0516 at 570.691 kb on - strand, within Psest_0516 at 570.702 kb on - strand, within Psest_0516 at 570.971 kb on + strand at 570.990 kb on + strand at 572.003 kb on + strand at 572.003 kb on + strand at 572.003 kb on + strand at 572.003 kb on + strand at 572.003 kb on + strand at 572.003 kb on + strand at 572.003 kb on + strand at 572.003 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 569,025 + Psest_0515 0.22 -2.2 569,026 - Psest_0515 0.22 -1.6 569,026 - Psest_0515 0.22 -0.8 569,026 - Psest_0515 0.22 -0.9 569,040 + Psest_0515 0.23 +1.2 569,061 + Psest_0515 0.25 +0.2 569,061 + Psest_0515 0.25 +1.1 569,061 + Psest_0515 0.25 -3.9 569,061 + Psest_0515 0.25 -1.8 569,061 + Psest_0515 0.25 -0.4 569,160 + Psest_0515 0.35 +1.2 569,211 + Psest_0515 0.40 -0.1 569,211 + Psest_0515 0.40 +1.2 569,302 + Psest_0515 0.50 -1.2 569,674 + Psest_0515 0.87 +2.2 569,675 - Psest_0515 0.87 -2.5 569,675 - Psest_0515 0.87 -2.6 569,818 - -1.9 569,818 - -0.9 569,818 - -2.3 569,826 + -0.7 569,826 + +0.7 569,827 - -1.6 569,881 + -0.5 569,881 + -1.7 569,882 - -1.4 569,882 - +0.2 569,882 - -2.1 569,996 - Psest_0516 0.13 -0.4 570,060 + Psest_0516 0.18 -2.8 570,061 - Psest_0516 0.18 -2.3 570,061 - Psest_0516 0.18 +0.6 570,061 - Psest_0516 0.18 -1.8 570,061 - Psest_0516 0.18 -2.3 570,061 - Psest_0516 0.18 -1.5 570,061 - Psest_0516 0.18 -1.4 570,061 - Psest_0516 0.18 -0.6 570,061 - Psest_0516 0.18 +0.2 570,152 + Psest_0516 0.26 -0.2 570,153 - Psest_0516 0.26 -1.2 570,153 - Psest_0516 0.26 -1.2 570,284 + Psest_0516 0.37 -0.4 570,284 + Psest_0516 0.37 -2.8 570,284 + Psest_0516 0.37 -1.4 570,285 - Psest_0516 0.38 +0.0 570,285 - Psest_0516 0.38 -1.0 570,285 - Psest_0516 0.38 -2.3 570,285 - Psest_0516 0.38 -1.0 570,408 + Psest_0516 0.48 -1.0 570,408 + Psest_0516 0.48 -0.2 570,408 + Psest_0516 0.48 -1.2 570,408 + Psest_0516 0.48 -0.8 570,408 + Psest_0516 0.48 -2.2 570,408 + Psest_0516 0.48 -2.3 570,408 + Psest_0516 0.48 -1.0 570,408 + Psest_0516 0.48 -2.2 570,408 + Psest_0516 0.48 -1.2 570,408 + Psest_0516 0.48 -1.5 570,408 + Psest_0516 0.48 -2.2 570,409 - Psest_0516 0.48 -3.0 570,409 - Psest_0516 0.48 +0.4 570,409 - Psest_0516 0.48 -1.5 570,409 - Psest_0516 0.48 -0.1 570,435 + Psest_0516 0.51 +0.9 570,435 + Psest_0516 0.51 -1.1 570,436 - Psest_0516 0.51 -0.5 570,436 - Psest_0516 0.51 -1.5 570,436 - Psest_0516 0.51 -1.8 570,436 - Psest_0516 0.51 -1.3 570,436 - Psest_0516 0.51 -1.6 570,436 - Psest_0516 0.51 -1.9 570,436 - Psest_0516 0.51 -1.7 570,436 - Psest_0516 0.51 -2.1 570,436 - Psest_0516 0.51 -2.6 570,436 - Psest_0516 0.51 -1.6 570,436 - Psest_0516 0.51 -1.9 570,436 - Psest_0516 0.51 +1.6 570,436 - Psest_0516 0.51 -0.1 570,436 - Psest_0516 0.51 -3.5 570,436 - Psest_0516 0.51 -2.1 570,657 + Psest_0516 0.70 -0.9 570,658 - Psest_0516 0.70 -1.6 570,690 + Psest_0516 0.73 +0.0 570,691 - Psest_0516 0.73 -0.4 570,702 - Psest_0516 0.74 -0.7 570,971 + +0.6 570,990 + -0.6 572,003 + +0.4 572,003 + +0.3 572,003 + +1.5 572,003 + +0.2 572,003 + -0.0 572,003 + -1.2 572,003 + -0.2 572,003 + +0.3
Or see this region's nucleotide sequence