Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4289

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4288 and Psest_4289 are separated by 58 nucleotidesPsest_4289 and Psest_4290 are separated by 132 nucleotides Psest_4288: Psest_4288 - Glutamate--putrescine ligase (EC 6.3.1.11) (from data), at 4,480,916 to 4,482,289 _4288 Psest_4289: Psest_4289 - Transcriptional regulator, at 4,482,348 to 4,482,998 _4289 Psest_4290: Psest_4290 - N-carbamoylputrescine amidase, at 4,483,131 to 4,484,012 _4290 Position (kb) 4482 4483Strain fitness (log2 ratio) -2 -1 0 1 2at 4481.360 kb on + strand, within Psest_4288at 4481.361 kb on - strand, within Psest_4288at 4481.448 kb on - strand, within Psest_4288at 4481.448 kb on - strand, within Psest_4288at 4481.471 kb on + strand, within Psest_4288at 4481.471 kb on + strand, within Psest_4288at 4481.472 kb on - strand, within Psest_4288at 4481.472 kb on - strand, within Psest_4288at 4481.472 kb on - strand, within Psest_4288at 4481.518 kb on + strand, within Psest_4288at 4481.518 kb on + strand, within Psest_4288at 4481.519 kb on - strand, within Psest_4288at 4481.519 kb on - strand, within Psest_4288at 4481.648 kb on + strand, within Psest_4288at 4481.649 kb on - strand, within Psest_4288at 4481.752 kb on + strand, within Psest_4288at 4481.752 kb on + strand, within Psest_4288at 4481.752 kb on + strand, within Psest_4288at 4481.752 kb on + strand, within Psest_4288at 4481.752 kb on + strand, within Psest_4288at 4481.752 kb on + strand, within Psest_4288at 4481.752 kb on + strand, within Psest_4288at 4481.752 kb on + strand, within Psest_4288at 4481.752 kb on + strand, within Psest_4288at 4481.752 kb on + strand, within Psest_4288at 4481.752 kb on + strand, within Psest_4288at 4481.752 kb on + strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.753 kb on - strand, within Psest_4288at 4481.754 kb on + strand, within Psest_4288at 4481.754 kb on + strand, within Psest_4288at 4481.755 kb on - strand, within Psest_4288at 4481.755 kb on - strand, within Psest_4288at 4481.755 kb on - strand, within Psest_4288at 4481.755 kb on - strand, within Psest_4288at 4481.755 kb on - strand, within Psest_4288at 4481.888 kb on + strand, within Psest_4288at 4481.888 kb on + strand, within Psest_4288at 4481.888 kb on + strand, within Psest_4288at 4481.888 kb on + strand, within Psest_4288at 4481.888 kb on + strand, within Psest_4288at 4481.888 kb on + strand, within Psest_4288at 4481.888 kb on + strand, within Psest_4288at 4481.889 kb on - strand, within Psest_4288at 4481.889 kb on - strand, within Psest_4288at 4481.889 kb on - strand, within Psest_4288at 4481.889 kb on - strand, within Psest_4288at 4481.889 kb on - strand, within Psest_4288at 4482.008 kb on + strand, within Psest_4288at 4482.008 kb on + strand, within Psest_4288at 4482.096 kb on - strand, within Psest_4288at 4482.177 kb on - strandat 4482.177 kb on - strandat 4482.191 kb on + strandat 4482.191 kb on + strandat 4482.192 kb on - strandat 4482.192 kb on - strandat 4482.192 kb on - strandat 4482.192 kb on - strandat 4482.192 kb on - strandat 4482.192 kb on - strandat 4482.263 kb on + strandat 4482.263 kb on + strandat 4482.264 kb on - strandat 4482.264 kb on - strandat 4482.264 kb on - strandat 4482.342 kb on - strandat 4482.472 kb on + strand, within Psest_4289at 4482.472 kb on + strand, within Psest_4289at 4482.472 kb on + strand, within Psest_4289at 4482.473 kb on - strand, within Psest_4289at 4482.473 kb on - strand, within Psest_4289at 4482.473 kb on - strand, within Psest_4289at 4482.473 kb on - strand, within Psest_4289at 4482.473 kb on - strand, within Psest_4289at 4482.474 kb on + strand, within Psest_4289at 4482.474 kb on + strand, within Psest_4289at 4482.474 kb on + strand, within Psest_4289at 4482.475 kb on - strand, within Psest_4289at 4482.475 kb on - strand, within Psest_4289at 4482.516 kb on + strand, within Psest_4289at 4482.517 kb on - strand, within Psest_4289at 4482.517 kb on - strand, within Psest_4289at 4482.670 kb on + strand, within Psest_4289at 4482.672 kb on + strand, within Psest_4289at 4482.672 kb on + strand, within Psest_4289at 4482.673 kb on - strand, within Psest_4289at 4482.673 kb on - strand, within Psest_4289at 4482.673 kb on - strand, within Psest_4289at 4482.673 kb on - strand, within Psest_4289at 4482.673 kb on - strand, within Psest_4289at 4482.673 kb on - strand, within Psest_4289at 4482.673 kb on - strand, within Psest_4289at 4482.673 kb on - strand, within Psest_4289at 4482.868 kb on - strand, within Psest_4289at 4482.868 kb on - strand, within Psest_4289at 4482.868 kb on - strand, within Psest_4289at 4482.889 kb on - strand, within Psest_4289at 4482.954 kb on + strandat 4482.954 kb on + strandat 4482.954 kb on + strandat 4482.954 kb on + strandat 4482.955 kb on - strandat 4482.967 kb on - strandat 4483.003 kb on + strandat 4483.007 kb on + strandat 4483.047 kb on + strandat 4483.047 kb on + strandat 4483.047 kb on + strandat 4483.047 kb on + strandat 4483.047 kb on + strandat 4483.047 kb on + strandat 4483.047 kb on + strandat 4483.047 kb on + strandat 4483.070 kb on + strandat 4483.071 kb on - strandat 4483.278 kb on + strand, within Psest_4290at 4483.278 kb on + strand, within Psest_4290at 4483.279 kb on - strand, within Psest_4290at 4483.279 kb on - strand, within Psest_4290at 4483.279 kb on - strand, within Psest_4290at 4483.306 kb on - strand, within Psest_4290at 4483.518 kb on + strand, within Psest_4290at 4483.518 kb on + strand, within Psest_4290at 4483.518 kb on + strand, within Psest_4290at 4483.519 kb on - strand, within Psest_4290at 4483.521 kb on + strand, within Psest_4290at 4483.521 kb on + strand, within Psest_4290at 4483.521 kb on + strand, within Psest_4290at 4483.522 kb on - strand, within Psest_4290at 4483.522 kb on - strand, within Psest_4290at 4483.522 kb on - strand, within Psest_4290at 4483.522 kb on - strand, within Psest_4290at 4483.560 kb on - strand, within Psest_4290at 4483.969 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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4,481,360 + Psest_4288 0.32 +0.9
4,481,361 - Psest_4288 0.32 +0.2
4,481,448 - Psest_4288 0.39 +1.0
4,481,448 - Psest_4288 0.39 -0.2
4,481,471 + Psest_4288 0.40 +2.1
4,481,471 + Psest_4288 0.40 +0.3
4,481,472 - Psest_4288 0.40 +0.1
4,481,472 - Psest_4288 0.40 +0.1
4,481,472 - Psest_4288 0.40 -0.4
4,481,518 + Psest_4288 0.44 -0.3
4,481,518 + Psest_4288 0.44 +2.0
4,481,519 - Psest_4288 0.44 +0.6
4,481,519 - Psest_4288 0.44 -0.7
4,481,648 + Psest_4288 0.53 -1.5
4,481,649 - Psest_4288 0.53 +0.1
4,481,752 + Psest_4288 0.61 +1.4
4,481,752 + Psest_4288 0.61 +0.4
4,481,752 + Psest_4288 0.61 -2.1
4,481,752 + Psest_4288 0.61 +0.3
4,481,752 + Psest_4288 0.61 -0.0
4,481,752 + Psest_4288 0.61 +1.1
4,481,752 + Psest_4288 0.61 -0.4
4,481,752 + Psest_4288 0.61 -0.8
4,481,752 + Psest_4288 0.61 +0.1
4,481,752 + Psest_4288 0.61 -1.7
4,481,752 + Psest_4288 0.61 -0.1
4,481,752 + Psest_4288 0.61 +0.4
4,481,753 - Psest_4288 0.61 +1.1
4,481,753 - Psest_4288 0.61 +0.9
4,481,753 - Psest_4288 0.61 +0.1
4,481,753 - Psest_4288 0.61 -0.1
4,481,753 - Psest_4288 0.61 -0.6
4,481,753 - Psest_4288 0.61 +2.0
4,481,753 - Psest_4288 0.61 -0.6
4,481,753 - Psest_4288 0.61 -1.0
4,481,753 - Psest_4288 0.61 +0.7
4,481,753 - Psest_4288 0.61 -0.5
4,481,753 - Psest_4288 0.61 +0.3
4,481,753 - Psest_4288 0.61 +0.2
4,481,753 - Psest_4288 0.61 +2.0
4,481,753 - Psest_4288 0.61 -1.3
4,481,753 - Psest_4288 0.61 +0.1
4,481,753 - Psest_4288 0.61 -0.1
4,481,753 - Psest_4288 0.61 -0.7
4,481,754 + Psest_4288 0.61 +0.6
4,481,754 + Psest_4288 0.61 +0.2
4,481,755 - Psest_4288 0.61 +1.0
4,481,755 - Psest_4288 0.61 +0.2
4,481,755 - Psest_4288 0.61 +0.1
4,481,755 - Psest_4288 0.61 -0.4
4,481,755 - Psest_4288 0.61 -0.6
4,481,888 + Psest_4288 0.71 +0.1
4,481,888 + Psest_4288 0.71 -0.8
4,481,888 + Psest_4288 0.71 +0.5
4,481,888 + Psest_4288 0.71 +0.3
4,481,888 + Psest_4288 0.71 -0.1
4,481,888 + Psest_4288 0.71 -0.2
4,481,888 + Psest_4288 0.71 +0.6
4,481,889 - Psest_4288 0.71 -0.3
4,481,889 - Psest_4288 0.71 +0.6
4,481,889 - Psest_4288 0.71 +1.6
4,481,889 - Psest_4288 0.71 +0.6
4,481,889 - Psest_4288 0.71 +0.6
4,482,008 + Psest_4288 0.79 +0.8
4,482,008 + Psest_4288 0.79 -0.2
4,482,096 - Psest_4288 0.86 +0.3
4,482,177 - +1.2
4,482,177 - +0.0
4,482,191 + +1.4
4,482,191 + +0.4
4,482,192 - +0.7
4,482,192 - -0.8
4,482,192 - -0.2
4,482,192 - -0.3
4,482,192 - +0.5
4,482,192 - +0.4
4,482,263 + +0.3
4,482,263 + -1.1
4,482,264 - -0.6
4,482,264 - -0.3
4,482,264 - +2.1
4,482,342 - +1.4
4,482,472 + Psest_4289 0.19 +0.1
4,482,472 + Psest_4289 0.19 +0.3
4,482,472 + Psest_4289 0.19 +0.1
4,482,473 - Psest_4289 0.19 +1.2
4,482,473 - Psest_4289 0.19 -0.1
4,482,473 - Psest_4289 0.19 +0.6
4,482,473 - Psest_4289 0.19 +0.8
4,482,473 - Psest_4289 0.19 -0.8
4,482,474 + Psest_4289 0.19 +0.5
4,482,474 + Psest_4289 0.19 +1.1
4,482,474 + Psest_4289 0.19 -0.4
4,482,475 - Psest_4289 0.20 -0.1
4,482,475 - Psest_4289 0.20 +0.2
4,482,516 + Psest_4289 0.26 -0.4
4,482,517 - Psest_4289 0.26 -1.8
4,482,517 - Psest_4289 0.26 -0.0
4,482,670 + Psest_4289 0.49 -0.9
4,482,672 + Psest_4289 0.50 -0.1
4,482,672 + Psest_4289 0.50 -0.8
4,482,673 - Psest_4289 0.50 -0.3
4,482,673 - Psest_4289 0.50 +1.5
4,482,673 - Psest_4289 0.50 +0.5
4,482,673 - Psest_4289 0.50 +1.0
4,482,673 - Psest_4289 0.50 -0.7
4,482,673 - Psest_4289 0.50 -0.6
4,482,673 - Psest_4289 0.50 -2.1
4,482,673 - Psest_4289 0.50 +0.3
4,482,868 - Psest_4289 0.80 -0.5
4,482,868 - Psest_4289 0.80 -0.6
4,482,868 - Psest_4289 0.80 +0.6
4,482,889 - Psest_4289 0.83 -1.3
4,482,954 + -0.6
4,482,954 + -0.2
4,482,954 + +0.2
4,482,954 + -0.4
4,482,955 - +1.2
4,482,967 - -0.2
4,483,003 + +0.4
4,483,007 + -1.5
4,483,047 + -0.3
4,483,047 + -1.4
4,483,047 + -0.3
4,483,047 + -1.2
4,483,047 + +1.8
4,483,047 + +0.6
4,483,047 + +0.9
4,483,047 + +0.9
4,483,070 + +0.9
4,483,071 - -0.1
4,483,278 + Psest_4290 0.17 +0.6
4,483,278 + Psest_4290 0.17 +1.6
4,483,279 - Psest_4290 0.17 +1.1
4,483,279 - Psest_4290 0.17 +0.6
4,483,279 - Psest_4290 0.17 -0.4
4,483,306 - Psest_4290 0.20 -1.1
4,483,518 + Psest_4290 0.44 +0.0
4,483,518 + Psest_4290 0.44 +0.9
4,483,518 + Psest_4290 0.44 +0.3
4,483,519 - Psest_4290 0.44 -0.6
4,483,521 + Psest_4290 0.44 +1.2
4,483,521 + Psest_4290 0.44 +0.8
4,483,521 + Psest_4290 0.44 -0.6
4,483,522 - Psest_4290 0.44 +0.2
4,483,522 - Psest_4290 0.44 +0.5
4,483,522 - Psest_4290 0.44 +0.2
4,483,522 - Psest_4290 0.44 -0.5
4,483,560 - Psest_4290 0.49 -0.5
4,483,969 - +0.6

Or see this region's nucleotide sequence