Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0407 and Psest_0408 are separated by 135 nucleotides Psest_0408 and Psest_0409 are separated by 489 nucleotides
Psest_0407: Psest_0407 - Dioxygenases related to 2-nitropropane dioxygenase, at 442,238 to 443,281
_0407
Psest_0408: Psest_0408 - Protein involved in catabolism of external DNA, at 443,417 to 444,265
_0408
Psest_0409: Psest_0409 - Putative homoserine kinase type II (protein kinase fold), at 444,755 to 445,729
_0409
Position (kb) 443
444
445 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 442.495 kb on + strand, within Psest_0407 at 442.566 kb on + strand, within Psest_0407 at 442.577 kb on + strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.583 kb on + strand, within Psest_0407 at 442.584 kb on - strand, within Psest_0407 at 443.091 kb on + strand, within Psest_0407 at 443.091 kb on + strand, within Psest_0407 at 443.091 kb on + strand, within Psest_0407 at 443.092 kb on - strand, within Psest_0407 at 443.325 kb on + strand at 443.487 kb on + strand at 443.556 kb on - strand, within Psest_0408 at 443.584 kb on + strand, within Psest_0408 at 443.655 kb on - strand, within Psest_0408 at 443.700 kb on - strand, within Psest_0408 at 443.953 kb on + strand, within Psest_0408 at 443.954 kb on - strand, within Psest_0408 at 444.035 kb on + strand, within Psest_0408 at 444.035 kb on + strand, within Psest_0408 at 444.036 kb on - strand, within Psest_0408 at 444.253 kb on + strand at 444.254 kb on - strand at 444.310 kb on + strand at 444.310 kb on + strand at 444.310 kb on + strand at 444.310 kb on + strand at 444.311 kb on - strand at 444.311 kb on - strand at 444.311 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.757 kb on - strand at 444.903 kb on + strand, within Psest_0409 at 444.903 kb on + strand, within Psest_0409 at 445.219 kb on - strand, within Psest_0409
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 442,495 + Psest_0407 0.25 +0.1 442,566 + Psest_0407 0.31 -0.0 442,577 + Psest_0407 0.32 -0.3 442,578 - Psest_0407 0.33 -0.0 442,578 - Psest_0407 0.33 -0.5 442,578 - Psest_0407 0.33 -0.3 442,578 - Psest_0407 0.33 +2.3 442,583 + Psest_0407 0.33 +0.7 442,584 - Psest_0407 0.33 +1.5 443,091 + Psest_0407 0.82 -1.8 443,091 + Psest_0407 0.82 +0.7 443,091 + Psest_0407 0.82 +1.7 443,092 - Psest_0407 0.82 +1.3 443,325 + +0.2 443,487 + -1.0 443,556 - Psest_0408 0.16 +1.7 443,584 + Psest_0408 0.20 -1.1 443,655 - Psest_0408 0.28 -1.6 443,700 - Psest_0408 0.33 -1.2 443,953 + Psest_0408 0.63 -1.7 443,954 - Psest_0408 0.63 +2.3 444,035 + Psest_0408 0.73 +1.1 444,035 + Psest_0408 0.73 -0.0 444,036 - Psest_0408 0.73 -1.2 444,253 + -0.7 444,254 - +1.0 444,310 + +0.4 444,310 + -0.8 444,310 + -1.8 444,310 + -0.8 444,311 - -0.5 444,311 - +1.3 444,311 - -0.9 444,467 - +0.3 444,467 - +0.7 444,467 - -0.9 444,467 - +1.3 444,467 - -0.5 444,467 - -0.0 444,467 - -1.1 444,467 - +2.9 444,467 - +0.7 444,622 + -0.1 444,622 + -0.8 444,622 + -0.5 444,622 + -0.6 444,622 + -1.1 444,711 + +0.8 444,711 + +1.8 444,711 + -1.8 444,711 + -0.3 444,711 + -1.9 444,712 - -0.7 444,712 - +0.2 444,712 - -0.3 444,712 - +0.3 444,712 - -0.6 444,712 - -1.1 444,712 - -0.3 444,712 - +0.3 444,712 - -0.4 444,712 - +0.0 444,712 - -0.5 444,712 - -0.5 444,712 - +1.3 444,712 - -0.4 444,757 - +1.7 444,903 + Psest_0409 0.15 -0.7 444,903 + Psest_0409 0.15 +1.3 445,219 - Psest_0409 0.48 -0.5
Or see this region's nucleotide sequence