Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2677 and Psest_2678 overlap by 8 nucleotides Psest_2678 and Psest_2679 are separated by 46 nucleotides
Psest_2677: Psest_2677 - ABC-type multidrug transport system, ATPase and permease components, at 2,866,366 to 2,868,144
_2677
Psest_2678: Psest_2678 - Predicted protein-disulfide isomerase, at 2,868,137 to 2,868,766
_2678
Psest_2679: Psest_2679 - Predicted sulfurtransferase, at 2,868,813 to 2,869,748
_2679
Position (kb)
2868
2869 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2867.183 kb on + strand, within Psest_2677 at 2867.183 kb on + strand, within Psest_2677 at 2867.183 kb on + strand, within Psest_2677 at 2867.184 kb on - strand, within Psest_2677 at 2867.184 kb on - strand, within Psest_2677 at 2867.184 kb on - strand, within Psest_2677 at 2867.184 kb on - strand, within Psest_2677 at 2867.192 kb on + strand, within Psest_2677 at 2867.241 kb on - strand, within Psest_2677 at 2867.241 kb on - strand, within Psest_2677 at 2867.241 kb on - strand, within Psest_2677 at 2867.241 kb on - strand, within Psest_2677 at 2867.241 kb on - strand, within Psest_2677 at 2867.314 kb on + strand, within Psest_2677 at 2867.314 kb on + strand, within Psest_2677 at 2867.315 kb on - strand, within Psest_2677 at 2867.323 kb on - strand, within Psest_2677 at 2867.390 kb on + strand, within Psest_2677 at 2867.390 kb on + strand, within Psest_2677 at 2867.390 kb on + strand, within Psest_2677 at 2867.512 kb on - strand, within Psest_2677 at 2867.512 kb on - strand, within Psest_2677 at 2867.542 kb on + strand, within Psest_2677 at 2867.542 kb on + strand, within Psest_2677 at 2867.587 kb on - strand, within Psest_2677 at 2867.899 kb on + strand, within Psest_2677 at 2867.899 kb on + strand, within Psest_2677 at 2867.900 kb on - strand, within Psest_2677 at 2867.900 kb on - strand, within Psest_2677 at 2867.900 kb on - strand, within Psest_2677 at 2867.900 kb on - strand, within Psest_2677 at 2867.902 kb on - strand, within Psest_2677 at 2867.902 kb on - strand, within Psest_2677 at 2867.902 kb on - strand, within Psest_2677 at 2867.902 kb on - strand, within Psest_2677 at 2867.921 kb on + strand, within Psest_2677 at 2867.922 kb on - strand, within Psest_2677 at 2867.979 kb on + strand at 2867.979 kb on + strand at 2867.980 kb on - strand at 2867.992 kb on + strand at 2867.992 kb on + strand at 2867.992 kb on + strand at 2868.023 kb on - strand at 2868.417 kb on + strand, within Psest_2678 at 2868.417 kb on + strand, within Psest_2678 at 2868.417 kb on + strand, within Psest_2678 at 2868.417 kb on + strand, within Psest_2678 at 2868.417 kb on + strand, within Psest_2678 at 2868.417 kb on + strand, within Psest_2678 at 2868.418 kb on - strand, within Psest_2678 at 2868.455 kb on - strand, within Psest_2678 at 2868.455 kb on - strand, within Psest_2678 at 2868.455 kb on - strand, within Psest_2678 at 2868.586 kb on - strand, within Psest_2678 at 2868.750 kb on + strand at 2868.750 kb on + strand at 2868.750 kb on + strand at 2868.750 kb on + strand at 2868.750 kb on + strand at 2868.750 kb on + strand at 2868.750 kb on + strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.781 kb on - strand at 2868.964 kb on + strand, within Psest_2679 at 2868.964 kb on + strand, within Psest_2679 at 2869.124 kb on - strand, within Psest_2679 at 2869.151 kb on - strand, within Psest_2679 at 2869.180 kb on + strand, within Psest_2679 at 2869.180 kb on + strand, within Psest_2679 at 2869.180 kb on + strand, within Psest_2679 at 2869.180 kb on + strand, within Psest_2679 at 2869.181 kb on - strand, within Psest_2679 at 2869.181 kb on - strand, within Psest_2679 at 2869.181 kb on - strand, within Psest_2679 at 2869.181 kb on - strand, within Psest_2679 at 2869.181 kb on - strand, within Psest_2679 at 2869.181 kb on - strand, within Psest_2679 at 2869.267 kb on + strand, within Psest_2679 at 2869.267 kb on + strand, within Psest_2679 at 2869.268 kb on - strand, within Psest_2679 at 2869.332 kb on + strand, within Psest_2679 at 2869.411 kb on + strand, within Psest_2679 at 2869.411 kb on + strand, within Psest_2679 at 2869.411 kb on + strand, within Psest_2679 at 2869.411 kb on + strand, within Psest_2679 at 2869.411 kb on + strand, within Psest_2679 at 2869.411 kb on + strand, within Psest_2679 at 2869.411 kb on + strand, within Psest_2679 at 2869.411 kb on + strand, within Psest_2679 at 2869.411 kb on + strand, within Psest_2679 at 2869.412 kb on - strand, within Psest_2679 at 2869.412 kb on - strand, within Psest_2679 at 2869.514 kb on - strand, within Psest_2679 at 2869.693 kb on + strand at 2869.694 kb on - strand at 2869.694 kb on - strand at 2869.718 kb on - strand at 2869.718 kb on - strand at 2869.752 kb on + strand at 2869.752 kb on + strand at 2869.752 kb on + strand at 2869.752 kb on + strand at 2869.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 2,867,183 + Psest_2677 0.46 -1.0 2,867,183 + Psest_2677 0.46 -0.4 2,867,183 + Psest_2677 0.46 -0.6 2,867,184 - Psest_2677 0.46 -0.2 2,867,184 - Psest_2677 0.46 -0.6 2,867,184 - Psest_2677 0.46 -0.2 2,867,184 - Psest_2677 0.46 -1.9 2,867,192 + Psest_2677 0.46 -0.7 2,867,241 - Psest_2677 0.49 +0.5 2,867,241 - Psest_2677 0.49 +1.7 2,867,241 - Psest_2677 0.49 +0.4 2,867,241 - Psest_2677 0.49 -0.0 2,867,241 - Psest_2677 0.49 +0.3 2,867,314 + Psest_2677 0.53 -0.3 2,867,314 + Psest_2677 0.53 +0.4 2,867,315 - Psest_2677 0.53 -0.6 2,867,323 - Psest_2677 0.54 +0.0 2,867,390 + Psest_2677 0.58 -0.8 2,867,390 + Psest_2677 0.58 -1.0 2,867,390 + Psest_2677 0.58 +0.0 2,867,512 - Psest_2677 0.64 -0.2 2,867,512 - Psest_2677 0.64 +0.3 2,867,542 + Psest_2677 0.66 +2.0 2,867,542 + Psest_2677 0.66 +0.0 2,867,587 - Psest_2677 0.69 +0.4 2,867,899 + Psest_2677 0.86 +1.5 2,867,899 + Psest_2677 0.86 -1.6 2,867,900 - Psest_2677 0.86 -0.0 2,867,900 - Psest_2677 0.86 -0.2 2,867,900 - Psest_2677 0.86 -1.7 2,867,900 - Psest_2677 0.86 +0.2 2,867,902 - Psest_2677 0.86 -1.0 2,867,902 - Psest_2677 0.86 -0.9 2,867,902 - Psest_2677 0.86 +0.6 2,867,902 - Psest_2677 0.86 +0.3 2,867,921 + Psest_2677 0.87 -0.6 2,867,922 - Psest_2677 0.87 -0.6 2,867,979 + +0.3 2,867,979 + -2.2 2,867,980 - +0.2 2,867,992 + -1.1 2,867,992 + -0.0 2,867,992 + -0.6 2,868,023 - +0.4 2,868,417 + Psest_2678 0.44 -0.4 2,868,417 + Psest_2678 0.44 -1.1 2,868,417 + Psest_2678 0.44 -0.7 2,868,417 + Psest_2678 0.44 -1.3 2,868,417 + Psest_2678 0.44 -0.7 2,868,417 + Psest_2678 0.44 +0.2 2,868,418 - Psest_2678 0.45 -0.3 2,868,455 - Psest_2678 0.50 -0.0 2,868,455 - Psest_2678 0.50 -0.8 2,868,455 - Psest_2678 0.50 -0.6 2,868,586 - Psest_2678 0.71 -2.8 2,868,750 + -0.4 2,868,750 + +0.2 2,868,750 + -1.3 2,868,750 + +0.2 2,868,750 + -0.4 2,868,750 + +1.3 2,868,750 + -0.6 2,868,751 - -0.1 2,868,751 - +0.9 2,868,751 - -1.1 2,868,751 - +0.3 2,868,751 - -1.4 2,868,751 - -1.5 2,868,751 - -0.8 2,868,751 - -1.3 2,868,751 - +0.6 2,868,781 - -1.4 2,868,964 + Psest_2679 0.16 -0.0 2,868,964 + Psest_2679 0.16 -0.2 2,869,124 - Psest_2679 0.33 -0.5 2,869,151 - Psest_2679 0.36 +0.6 2,869,180 + Psest_2679 0.39 -1.0 2,869,180 + Psest_2679 0.39 -0.5 2,869,180 + Psest_2679 0.39 +1.3 2,869,180 + Psest_2679 0.39 +0.4 2,869,181 - Psest_2679 0.39 -1.2 2,869,181 - Psest_2679 0.39 -0.1 2,869,181 - Psest_2679 0.39 -0.7 2,869,181 - Psest_2679 0.39 -0.3 2,869,181 - Psest_2679 0.39 -0.9 2,869,181 - Psest_2679 0.39 -1.5 2,869,267 + Psest_2679 0.49 -0.2 2,869,267 + Psest_2679 0.49 -0.9 2,869,268 - Psest_2679 0.49 +0.7 2,869,332 + Psest_2679 0.55 +0.3 2,869,411 + Psest_2679 0.64 -0.2 2,869,411 + Psest_2679 0.64 +1.2 2,869,411 + Psest_2679 0.64 +1.0 2,869,411 + Psest_2679 0.64 -0.0 2,869,411 + Psest_2679 0.64 -1.9 2,869,411 + Psest_2679 0.64 -0.2 2,869,411 + Psest_2679 0.64 -0.2 2,869,411 + Psest_2679 0.64 -1.4 2,869,411 + Psest_2679 0.64 -0.2 2,869,412 - Psest_2679 0.64 -0.3 2,869,412 - Psest_2679 0.64 -0.9 2,869,514 - Psest_2679 0.75 -0.2 2,869,693 + -0.5 2,869,694 - +0.3 2,869,694 - -0.3 2,869,718 - -1.1 2,869,718 - -0.3 2,869,752 + -1.0 2,869,752 + -0.3 2,869,752 + -0.5 2,869,752 + -1.0 2,869,753 - +0.2
Or see this region's nucleotide sequence