Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2664 and Psest_2665 are separated by 54 nucleotides Psest_2665 and Psest_2666 are separated by 20 nucleotides Psest_2666 and Psest_2667 are separated by 122 nucleotides
Psest_2664: Psest_2664 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 2,851,496 to 2,852,485
_2664
Psest_2665: Psest_2665 - Citrate lyase beta subunit, at 2,852,540 to 2,853,367
_2665
Psest_2666: Psest_2666 - Predicted acyl-CoA transferases/carnitine dehydratase, at 2,853,388 to 2,854,593
_2666
Psest_2667: Psest_2667 - Uncharacterized protein involved in propionate catabolism, at 2,854,716 to 2,856,068
_2667
Position (kb)
2853
2854
2855 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2852.476 kb on + strand at 2852.476 kb on + strand at 2852.491 kb on + strand at 2852.515 kb on + strand at 2853.703 kb on - strand, within Psest_2666 at 2853.873 kb on - strand, within Psest_2666 at 2853.878 kb on + strand, within Psest_2666 at 2853.878 kb on + strand, within Psest_2666 at 2853.879 kb on - strand, within Psest_2666 at 2853.879 kb on - strand, within Psest_2666 at 2853.929 kb on + strand, within Psest_2666 at 2853.930 kb on - strand, within Psest_2666 at 2853.935 kb on + strand, within Psest_2666 at 2853.938 kb on + strand, within Psest_2666 at 2853.938 kb on + strand, within Psest_2666 at 2853.938 kb on + strand, within Psest_2666 at 2853.939 kb on - strand, within Psest_2666 at 2853.939 kb on - strand, within Psest_2666 at 2853.939 kb on - strand, within Psest_2666 at 2853.947 kb on + strand, within Psest_2666 at 2854.047 kb on - strand, within Psest_2666 at 2854.047 kb on - strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.052 kb on + strand, within Psest_2666 at 2854.053 kb on - strand, within Psest_2666 at 2854.053 kb on - strand, within Psest_2666 at 2854.164 kb on - strand, within Psest_2666 at 2854.182 kb on - strand, within Psest_2666 at 2854.711 kb on + strand at 2855.003 kb on + strand, within Psest_2667 at 2855.003 kb on + strand, within Psest_2667 at 2855.004 kb on - strand, within Psest_2667 at 2855.004 kb on - strand, within Psest_2667 at 2855.004 kb on - strand, within Psest_2667 at 2855.007 kb on + strand, within Psest_2667 at 2855.007 kb on + strand, within Psest_2667
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 2,852,476 + -1.4 2,852,476 + -0.2 2,852,491 + +1.0 2,852,515 + +2.6 2,853,703 - Psest_2666 0.26 -1.0 2,853,873 - Psest_2666 0.40 -0.2 2,853,878 + Psest_2666 0.41 +3.0 2,853,878 + Psest_2666 0.41 -0.3 2,853,879 - Psest_2666 0.41 -2.5 2,853,879 - Psest_2666 0.41 -0.0 2,853,929 + Psest_2666 0.45 +0.1 2,853,930 - Psest_2666 0.45 -0.6 2,853,935 + Psest_2666 0.45 -0.6 2,853,938 + Psest_2666 0.46 +1.3 2,853,938 + Psest_2666 0.46 +0.2 2,853,938 + Psest_2666 0.46 +0.4 2,853,939 - Psest_2666 0.46 -2.0 2,853,939 - Psest_2666 0.46 -1.0 2,853,939 - Psest_2666 0.46 +0.2 2,853,947 + Psest_2666 0.46 -0.6 2,854,047 - Psest_2666 0.55 -0.9 2,854,047 - Psest_2666 0.55 -1.3 2,854,052 + Psest_2666 0.55 -0.0 2,854,052 + Psest_2666 0.55 -0.5 2,854,052 + Psest_2666 0.55 +0.8 2,854,052 + Psest_2666 0.55 -0.3 2,854,052 + Psest_2666 0.55 -1.0 2,854,052 + Psest_2666 0.55 -2.4 2,854,052 + Psest_2666 0.55 +1.0 2,854,052 + Psest_2666 0.55 -0.6 2,854,052 + Psest_2666 0.55 -0.5 2,854,052 + Psest_2666 0.55 -0.6 2,854,052 + Psest_2666 0.55 -0.2 2,854,052 + Psest_2666 0.55 -1.2 2,854,053 - Psest_2666 0.55 -0.5 2,854,053 - Psest_2666 0.55 -1.2 2,854,164 - Psest_2666 0.64 -1.5 2,854,182 - Psest_2666 0.66 +0.1 2,854,711 + +0.1 2,855,003 + Psest_2667 0.21 -0.2 2,855,003 + Psest_2667 0.21 -0.2 2,855,004 - Psest_2667 0.21 +0.2 2,855,004 - Psest_2667 0.21 +2.0 2,855,004 - Psest_2667 0.21 -1.0 2,855,007 + Psest_2667 0.22 -0.0 2,855,007 + Psest_2667 0.22 +0.4
Or see this region's nucleotide sequence