Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0201

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0199 and Psest_0200 are separated by 281 nucleotidesPsest_0200 and Psest_0201 are separated by 120 nucleotidesPsest_0201 and Psest_0202 are separated by 131 nucleotides Psest_0199: Psest_0199 - PAS domain S-box, at 197,027 to 198,613 _0199 Psest_0200: Psest_0200 - hypothetical protein, at 198,895 to 199,059 _0200 Psest_0201: Psest_0201 - PAS domain S-box, at 199,180 to 200,760 _0201 Psest_0202: Psest_0202 - diguanylate cyclase (GGDEF) domain, at 200,892 to 202,823 _0202 Position (kb) 199 200 201Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 198.213 kb on + strand, within Psest_0199at 198.300 kb on + strand, within Psest_0199at 198.300 kb on + strand, within Psest_0199at 198.300 kb on + strand, within Psest_0199at 198.300 kb on + strand, within Psest_0199at 198.301 kb on - strand, within Psest_0199at 198.301 kb on - strand, within Psest_0199at 198.301 kb on - strand, within Psest_0199at 198.301 kb on - strand, within Psest_0199at 198.331 kb on + strand, within Psest_0199at 198.332 kb on - strand, within Psest_0199at 198.576 kb on + strandat 198.653 kb on + strandat 198.660 kb on + strandat 198.699 kb on - strandat 198.765 kb on + strandat 198.765 kb on + strandat 198.765 kb on + strandat 198.765 kb on + strandat 198.769 kb on + strandat 198.769 kb on + strandat 198.769 kb on + strandat 198.769 kb on + strandat 198.769 kb on + strandat 198.769 kb on + strandat 198.770 kb on - strandat 198.770 kb on - strandat 198.770 kb on - strandat 198.770 kb on - strandat 198.770 kb on - strandat 198.801 kb on + strandat 198.801 kb on + strandat 198.801 kb on + strandat 198.801 kb on + strandat 198.801 kb on + strandat 198.801 kb on + strandat 198.801 kb on + strandat 198.801 kb on + strandat 198.801 kb on + strandat 198.801 kb on + strandat 198.875 kb on + strandat 198.875 kb on + strandat 198.875 kb on + strandat 198.875 kb on + strandat 198.875 kb on + strandat 198.875 kb on + strandat 198.875 kb on + strandat 198.876 kb on - strandat 198.876 kb on - strandat 198.876 kb on - strandat 198.876 kb on - strandat 198.876 kb on - strandat 199.083 kb on + strandat 199.122 kb on - strandat 199.179 kb on + strandat 199.179 kb on + strandat 199.180 kb on - strandat 199.180 kb on - strandat 199.180 kb on - strandat 199.180 kb on - strandat 199.236 kb on + strandat 199.274 kb on - strandat 199.274 kb on - strandat 199.274 kb on - strandat 199.510 kb on + strand, within Psest_0201at 199.511 kb on - strand, within Psest_0201at 199.511 kb on - strand, within Psest_0201at 199.568 kb on - strand, within Psest_0201at 199.769 kb on + strand, within Psest_0201at 199.834 kb on + strand, within Psest_0201at 199.834 kb on + strand, within Psest_0201at 199.834 kb on + strand, within Psest_0201at 199.834 kb on + strand, within Psest_0201at 199.835 kb on - strand, within Psest_0201at 199.835 kb on - strand, within Psest_0201at 199.835 kb on - strand, within Psest_0201at 199.835 kb on - strand, within Psest_0201at 199.835 kb on - strand, within Psest_0201at 199.835 kb on - strand, within Psest_0201at 199.835 kb on - strand, within Psest_0201at 199.835 kb on - strand, within Psest_0201at 199.835 kb on - strand, within Psest_0201at 199.837 kb on - strand, within Psest_0201at 200.181 kb on + strand, within Psest_0201at 200.182 kb on - strand, within Psest_0201at 200.182 kb on - strand, within Psest_0201at 200.243 kb on + strand, within Psest_0201at 200.395 kb on - strand, within Psest_0201at 200.640 kb on + strandat 200.829 kb on + strandat 200.829 kb on + strandat 200.829 kb on + strandat 200.829 kb on + strandat 200.829 kb on + strandat 200.833 kb on + strandat 200.833 kb on + strandat 201.024 kb on + strandat 201.024 kb on + strandat 201.024 kb on + strandat 201.024 kb on + strandat 201.024 kb on + strandat 201.024 kb on + strandat 201.024 kb on + strandat 201.024 kb on + strandat 201.025 kb on - strandat 201.147 kb on + strand, within Psest_0202at 201.147 kb on + strand, within Psest_0202at 201.147 kb on + strand, within Psest_0202at 201.148 kb on - strand, within Psest_0202at 201.148 kb on - strand, within Psest_0202at 201.148 kb on - strand, within Psest_0202at 201.178 kb on - strand, within Psest_0202at 201.357 kb on + strand, within Psest_0202at 201.357 kb on + strand, within Psest_0202at 201.357 kb on + strand, within Psest_0202at 201.357 kb on + strand, within Psest_0202at 201.357 kb on + strand, within Psest_0202at 201.357 kb on + strand, within Psest_0202at 201.357 kb on + strand, within Psest_0202at 201.357 kb on + strand, within Psest_0202at 201.357 kb on + strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.358 kb on - strand, within Psest_0202at 201.360 kb on - strand, within Psest_0202at 201.360 kb on - strand, within Psest_0202at 201.492 kb on + strand, within Psest_0202at 201.531 kb on + strand, within Psest_0202at 201.532 kb on - strand, within Psest_0202at 201.532 kb on - strand, within Psest_0202at 201.549 kb on + strand, within Psest_0202at 201.549 kb on + strand, within Psest_0202at 201.570 kb on + strand, within Psest_0202at 201.570 kb on + strand, within Psest_0202at 201.570 kb on + strand, within Psest_0202at 201.570 kb on + strand, within Psest_0202at 201.570 kb on + strand, within Psest_0202at 201.570 kb on + strand, within Psest_0202at 201.570 kb on + strand, within Psest_0202at 201.571 kb on - strand, within Psest_0202at 201.571 kb on - strand, within Psest_0202at 201.571 kb on - strand, within Psest_0202at 201.571 kb on - strand, within Psest_0202at 201.603 kb on + strand, within Psest_0202at 201.603 kb on + strand, within Psest_0202at 201.603 kb on + strand, within Psest_0202at 201.603 kb on + strand, within Psest_0202at 201.756 kb on + strand, within Psest_0202at 201.757 kb on - strand, within Psest_0202

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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198,213 + Psest_0199 0.75 -1.5
198,300 + Psest_0199 0.80 +0.3
198,300 + Psest_0199 0.80 -0.7
198,300 + Psest_0199 0.80 -0.9
198,300 + Psest_0199 0.80 +0.7
198,301 - Psest_0199 0.80 +2.3
198,301 - Psest_0199 0.80 +0.7
198,301 - Psest_0199 0.80 +0.2
198,301 - Psest_0199 0.80 +1.0
198,331 + Psest_0199 0.82 +2.9
198,332 - Psest_0199 0.82 +0.3
198,576 + +2.9
198,653 + -0.9
198,660 + +0.7
198,699 - +1.3
198,765 + -0.0
198,765 + -0.4
198,765 + +1.0
198,765 + +0.3
198,769 + +0.7
198,769 + +1.3
198,769 + +0.3
198,769 + -1.0
198,769 + +0.5
198,769 + +2.3
198,770 - -0.6
198,770 - +0.3
198,770 - +0.3
198,770 - +1.3
198,770 - -0.3
198,801 + -0.7
198,801 + +0.3
198,801 + +1.0
198,801 + +1.3
198,801 + +0.7
198,801 + -0.0
198,801 + +0.3
198,801 + -0.7
198,801 + +1.3
198,801 + -0.1
198,875 + +2.3
198,875 + +1.3
198,875 + -0.5
198,875 + +0.1
198,875 + -0.7
198,875 + -0.0
198,875 + +0.7
198,876 - -0.9
198,876 - +0.1
198,876 - +1.3
198,876 - -0.2
198,876 - +0.3
199,083 + +0.3
199,122 - +1.5
199,179 + -0.0
199,179 + +2.3
199,180 - -0.7
199,180 - +0.3
199,180 - +0.3
199,180 - +0.4
199,236 + -0.0
199,274 - +0.7
199,274 - -0.5
199,274 - +2.3
199,510 + Psest_0201 0.21 +2.3
199,511 - Psest_0201 0.21 -0.5
199,511 - Psest_0201 0.21 +0.3
199,568 - Psest_0201 0.25 -1.2
199,769 + Psest_0201 0.37 +1.0
199,834 + Psest_0201 0.41 -0.5
199,834 + Psest_0201 0.41 -0.3
199,834 + Psest_0201 0.41 +0.2
199,834 + Psest_0201 0.41 -0.7
199,835 - Psest_0201 0.41 +3.3
199,835 - Psest_0201 0.41 +1.3
199,835 - Psest_0201 0.41 -0.0
199,835 - Psest_0201 0.41 -0.9
199,835 - Psest_0201 0.41 -0.6
199,835 - Psest_0201 0.41 +1.3
199,835 - Psest_0201 0.41 +1.3
199,835 - Psest_0201 0.41 +0.3
199,835 - Psest_0201 0.41 -0.0
199,837 - Psest_0201 0.42 +2.9
200,181 + Psest_0201 0.63 -1.0
200,182 - Psest_0201 0.63 +0.7
200,182 - Psest_0201 0.63 +1.7
200,243 + Psest_0201 0.67 +0.6
200,395 - Psest_0201 0.77 -0.0
200,640 + +0.6
200,829 + +1.3
200,829 + -0.7
200,829 + -2.6
200,829 + -0.3
200,829 + +0.2
200,833 + -1.0
200,833 + +0.1
201,024 + -0.3
201,024 + -0.0
201,024 + -0.0
201,024 + +1.1
201,024 + -1.2
201,024 + -0.0
201,024 + +1.3
201,024 + -0.7
201,025 - +1.3
201,147 + Psest_0202 0.13 -0.9
201,147 + Psest_0202 0.13 +0.1
201,147 + Psest_0202 0.13 -1.2
201,148 - Psest_0202 0.13 +1.1
201,148 - Psest_0202 0.13 +0.7
201,148 - Psest_0202 0.13 +0.7
201,178 - Psest_0202 0.15 +3.9
201,357 + Psest_0202 0.24 +1.6
201,357 + Psest_0202 0.24 +1.3
201,357 + Psest_0202 0.24 -0.3
201,357 + Psest_0202 0.24 -0.9
201,357 + Psest_0202 0.24 +1.3
201,357 + Psest_0202 0.24 +0.7
201,357 + Psest_0202 0.24 -0.4
201,357 + Psest_0202 0.24 -0.0
201,357 + Psest_0202 0.24 -0.3
201,358 - Psest_0202 0.24 +1.1
201,358 - Psest_0202 0.24 +0.3
201,358 - Psest_0202 0.24 +1.6
201,358 - Psest_0202 0.24 +2.3
201,358 - Psest_0202 0.24 -0.9
201,358 - Psest_0202 0.24 +0.8
201,358 - Psest_0202 0.24 +0.5
201,358 - Psest_0202 0.24 -0.5
201,358 - Psest_0202 0.24 +0.9
201,358 - Psest_0202 0.24 -0.0
201,358 - Psest_0202 0.24 -0.0
201,358 - Psest_0202 0.24 +2.3
201,358 - Psest_0202 0.24 +3.3
201,358 - Psest_0202 0.24 -1.0
201,358 - Psest_0202 0.24 +1.3
201,358 - Psest_0202 0.24 -0.9
201,358 - Psest_0202 0.24 +0.7
201,358 - Psest_0202 0.24 +2.3
201,360 - Psest_0202 0.24 -0.3
201,360 - Psest_0202 0.24 +1.2
201,492 + Psest_0202 0.31 +0.7
201,531 + Psest_0202 0.33 -1.4
201,532 - Psest_0202 0.33 -0.0
201,532 - Psest_0202 0.33 -1.2
201,549 + Psest_0202 0.34 -0.6
201,549 + Psest_0202 0.34 -0.0
201,570 + Psest_0202 0.35 +1.0
201,570 + Psest_0202 0.35 +1.3
201,570 + Psest_0202 0.35 -0.3
201,570 + Psest_0202 0.35 +1.6
201,570 + Psest_0202 0.35 +3.9
201,570 + Psest_0202 0.35 +2.3
201,570 + Psest_0202 0.35 +1.3
201,571 - Psest_0202 0.35 +1.1
201,571 - Psest_0202 0.35 +1.5
201,571 - Psest_0202 0.35 +1.0
201,571 - Psest_0202 0.35 +2.3
201,603 + Psest_0202 0.37 +0.4
201,603 + Psest_0202 0.37 -1.2
201,603 + Psest_0202 0.37 +0.5
201,603 + Psest_0202 0.37 -0.4
201,756 + Psest_0202 0.45 +1.3
201,757 - Psest_0202 0.45 +2.6

Or see this region's nucleotide sequence