Strain Fitness in Shewanella amazonensis SB2B around Sama_3192

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
3,784,828	+				-1.1
3,784,828	+				+0.2
3,784,829	-				+0.5
3,784,829	-				-0.3
3,784,829	-				-1.7
3,784,843	-				+1.0
3,784,883	-				+0.3
3,784,883	-				-0.4
3,784,883	-				-0.9
3,785,062	+				+0.0
3,785,063	-				-0.3
3,785,063	-				+0.2
3,785,102	+				+0.9
3,785,102	+				+0.0
3,785,103	-				+0.6
3,785,140	+		Sama_3190	0.11	-0.4
3,785,140	+		Sama_3190	0.11	-0.7
3,785,140	+		Sama_3190	0.11	-0.2
3,785,140	+		Sama_3190	0.11	-0.6
3,785,141	-		Sama_3190	0.11	-1.3
3,785,141	-		Sama_3190	0.11	-0.0
3,785,141	-		Sama_3190	0.11	-0.3
3,785,171	+		Sama_3190	0.18	-1.6
3,785,172	-		Sama_3190	0.18	+1.4
3,785,182	+		Sama_3190	0.21	-0.7
3,785,336	+		Sama_3190	0.57	+0.1
3,785,336	+		Sama_3190	0.57	+0.4
3,785,336	+		Sama_3190	0.57	-0.5
3,785,337	-		Sama_3190	0.57	+0.6
3,785,337	-		Sama_3190	0.57	+0.7
3,785,337	-		Sama_3190	0.57	+0.6
3,785,346	+		Sama_3190	0.59	-0.7
3,785,346	+		Sama_3190	0.59	-1.3
3,785,346	+		Sama_3190	0.59	+0.1
3,785,346	+		Sama_3190	0.59	+0.8
3,785,346	+		Sama_3190	0.59	+0.9
3,785,346	+		Sama_3190	0.59	+0.9
3,785,346	+		Sama_3190	0.59	-0.6
3,785,346	+		Sama_3190	0.59	+0.7
3,785,346	+		Sama_3190	0.59	+1.4
3,785,346	+		Sama_3190	0.59	+0.0
3,785,347	-		Sama_3190	0.59	-0.3
3,785,347	-		Sama_3190	0.59	-0.4
3,785,347	-		Sama_3190	0.59	-0.6
3,785,347	-		Sama_3190	0.59	-0.3
3,785,347	-		Sama_3190	0.59	-0.9
3,785,347	-		Sama_3190	0.59	-0.3
3,785,347	-		Sama_3190	0.59	+0.6
3,785,347	-		Sama_3190	0.59	-0.1
3,785,347	-		Sama_3190	0.59	-1.8
3,785,347	-		Sama_3190	0.59	+0.3
3,785,347	-		Sama_3190	0.59	+0.2
3,785,347	-		Sama_3190	0.59	-0.6
3,785,566	+				-0.6
3,785,566	+				-0.0
3,785,566	+				-1.2
3,785,567	-				-1.0
3,785,567	-				+0.6
3,785,567	-				+0.7
3,785,612	+				-0.1
3,785,612	+				+0.1
3,785,612	+				+1.8
3,785,612	+				+0.1
3,785,612	+				-0.2
3,785,612	+				+0.0
3,785,612	+				-0.1
3,785,612	+				-0.1
3,785,613	-				-1.4
3,785,613	-				+0.1
3,785,613	-				-0.7
3,785,613	-				+0.3
3,785,613	-				+0.6
3,785,613	-				-0.6
3,785,613	-				+0.3
3,785,613	-				+0.8
3,785,613	-				-0.9
3,785,691	+		Sama_3191	0.45	-0.4
3,785,691	+		Sama_3191	0.45	+0.4
3,785,692	-		Sama_3191	0.46	-0.9
3,785,782	-				+1.4
3,785,782	-				+0.6
3,785,782	-				-1.9
3,785,803	+				+0.6
3,785,804	-				+0.4
3,785,804	-				-0.5
3,785,804	-				+0.0
3,785,807	-				+0.4
3,785,807	-				-1.3
3,785,807	-				-1.6
3,785,809	-				+0.6
3,785,830	+				-0.7
3,785,830	+				-0.9
3,785,831	-				-0.7
3,785,869	-		Sama_3192	0.14	-4.0
3,785,981	-		Sama_3192	0.44	-1.4
3,785,981	-		Sama_3192	0.44	-2.5
3,785,986	+		Sama_3192	0.45	-3.0
3,785,986	+		Sama_3192	0.45	-3.3
3,785,986	+		Sama_3192	0.45	+0.3
3,785,986	+		Sama_3192	0.45	-2.1
3,785,986	+		Sama_3192	0.45	-2.3
3,785,987	-		Sama_3192	0.45	-4.4
3,785,987	-		Sama_3192	0.45	-3.5
3,785,987	-		Sama_3192	0.45	-2.0
3,785,987	-		Sama_3192	0.45	-3.1
3,785,987	-		Sama_3192	0.45	-2.7
3,785,987	-		Sama_3192	0.45	-3.0
3,785,987	-		Sama_3192	0.45	-1.5
3,786,048	+		Sama_3192	0.62	-2.0
3,786,048	+		Sama_3192	0.62	-1.6
3,786,049	-		Sama_3192	0.62	-1.9
3,786,050	+		Sama_3192	0.62	+1.4
3,786,050	+		Sama_3192	0.62	-2.4
3,786,050	+		Sama_3192	0.62	-3.2
3,786,050	+		Sama_3192	0.62	-1.7
3,786,050	+		Sama_3192	0.62	-2.6
3,786,050	+		Sama_3192	0.62	-2.3
3,786,050	+		Sama_3192	0.62	-0.6
3,786,051	-		Sama_3192	0.63	-2.4
3,786,051	-		Sama_3192	0.63	-1.4
3,786,051	-		Sama_3192	0.63	-1.5
3,786,051	-		Sama_3192	0.63	-0.3
3,786,051	-		Sama_3192	0.63	-1.3
3,786,080	+		Sama_3192	0.70	-1.9
3,786,081	-		Sama_3192	0.71	-3.3
3,786,081	-		Sama_3192	0.71	-0.9
3,786,081	-		Sama_3192	0.71	-1.4
3,786,113	+		Sama_3192	0.79	-1.4
3,786,154	+				-4.5
3,786,154	+				-0.7
3,786,155	-				-0.4
3,786,155	-				-2.1
3,786,162	+				-1.6
3,786,184	+				-1.1
3,786,184	+				-3.6
3,786,184	+				+0.3
3,786,184	+				-3.4
3,786,185	-				-1.6
3,786,185	-				-1.1
3,786,185	-				-3.6
3,786,189	+				-1.9
3,786,189	+				-0.6
3,786,189	+				-2.7
3,786,189	+				-0.9
3,786,189	+				-2.4
3,786,189	+				-2.4
3,786,189	+				-0.9
3,786,189	+				-0.3
3,786,189	+				-2.3
3,786,190	-				-0.2
3,786,190	-				-1.6
3,786,190	-				-3.0
3,786,190	-				-3.6
3,786,190	-				-1.7
3,786,190	-				-0.7
3,786,190	-				-0.8
3,786,190	-				-1.8
3,786,190	-				-4.0
3,786,239	+				-1.6
3,786,240	-				+0.2
3,786,240	-				+0.0
3,786,240	-				-0.7
3,786,240	-				-0.7
3,786,262	+				-2.7
3,786,262	+				-0.2
3,786,262	+				-1.1
3,786,263	-				+1.8
3,786,275	-				-2.1
3,786,395	+		Sama_3193	0.28	-1.1
3,786,395	+		Sama_3193	0.28	+0.2
3,786,395	+		Sama_3193	0.28	-0.7
3,786,396	-		Sama_3193	0.28	+0.4
3,786,396	-		Sama_3193	0.28	-1.4
3,786,433	+		Sama_3193	0.37	+0.7
3,786,434	-		Sama_3193	0.37	-0.3
3,786,435	+		Sama_3193	0.37	+1.3
3,786,492	+		Sama_3193	0.51	+1.3
3,786,552	+		Sama_3193	0.66	+0.2
3,786,553	-		Sama_3193	0.66	+0.6
3,786,553	-		Sama_3193	0.66	+0.6
3,786,553	-		Sama_3193	0.66	+0.3
3,786,553	-		Sama_3193	0.66	+0.0
3,786,582	-		Sama_3193	0.73	-1.3
3,786,594	+		Sama_3193	0.76	-0.6
3,786,594	+		Sama_3193	0.76	+0.9
3,786,595	-		Sama_3193	0.76	+0.4
3,786,688	+				+0.7
3,786,688	+				-2.1
3,786,689	-				-0.5
3,786,714	+				+0.1
3,786,833	-				-2.0
3,786,833	-				-1.4
3,786,862	+		Sama_3194	0.13	+0.6
3,786,888	+		Sama_3194	0.18	-3.5
3,786,888	+		Sama_3194	0.18	-2.3
3,786,889	-		Sama_3194	0.19	-1.4
3,786,965	+		Sama_3194	0.35	-3.0
3,786,965	+		Sama_3194	0.35	-1.1
3,786,965	+		Sama_3194	0.35	+0.1
3,786,965	+		Sama_3194	0.35	-1.0
3,786,965	+		Sama_3194	0.35	-3.5
3,786,966	-		Sama_3194	0.36	-1.1
3,786,966	-		Sama_3194	0.36	-1.9
3,787,007	+		Sama_3194	0.45	-1.1
3,787,008	-		Sama_3194	0.45	-2.6
3,787,031	+		Sama_3194	0.50	-2.1
3,787,032	-		Sama_3194	0.50	-2.5
3,787,032	-		Sama_3194	0.50	+1.0
3,787,032	-		Sama_3194	0.50	-1.1
3,787,032	-		Sama_3194	0.50	-1.1
3,787,032	-		Sama_3194	0.50	-2.5
3,787,032	-		Sama_3194	0.50	-2.3
3,787,034	+		Sama_3194	0.50	-1.6
3,787,035	-		Sama_3194	0.51	-0.6
3,787,159	-		Sama_3194	0.78	-0.1