Strain Fitness in Shewanella amazonensis SB2B around Sama_3295

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
3,914,177	-				-1.1
3,914,177	-				-0.9
3,914,218	+	prpB	Sama_3294	0.14	-1.4
3,914,218	+	prpB	Sama_3294	0.14	-1.4
3,914,218	+	prpB	Sama_3294	0.14	+1.2
3,914,219	-	prpB	Sama_3294	0.14	+2.0
3,914,219	-	prpB	Sama_3294	0.14	-0.7
3,914,219	-	prpB	Sama_3294	0.14	-1.5
3,914,251	+	prpB	Sama_3294	0.18	-1.0
3,914,251	+	prpB	Sama_3294	0.18	-1.0
3,914,251	+	prpB	Sama_3294	0.18	-3.9
3,914,251	+	prpB	Sama_3294	0.18	+0.3
3,914,252	-	prpB	Sama_3294	0.18	-0.5
3,914,252	-	prpB	Sama_3294	0.18	-1.7
3,914,252	-	prpB	Sama_3294	0.18	-0.7
3,914,252	-	prpB	Sama_3294	0.18	-2.1
3,914,252	-	prpB	Sama_3294	0.18	-0.2
3,914,348	+	prpB	Sama_3294	0.29	-1.0
3,914,428	-	prpB	Sama_3294	0.38	-1.7
3,914,428	-	prpB	Sama_3294	0.38	-0.6
3,914,428	-	prpB	Sama_3294	0.38	-0.6
3,914,428	-	prpB	Sama_3294	0.38	-0.3
3,914,428	-	prpB	Sama_3294	0.38	-2.0
3,914,599	-	prpB	Sama_3294	0.57	+0.1
3,914,601	-	prpB	Sama_3294	0.57	-2.5
3,914,601	-	prpB	Sama_3294	0.57	-0.5
3,914,601	-	prpB	Sama_3294	0.57	-1.2
3,914,617	+	prpB	Sama_3294	0.59	-1.7
3,914,617	+	prpB	Sama_3294	0.59	+0.7
3,914,617	+	prpB	Sama_3294	0.59	-2.0
3,914,618	-	prpB	Sama_3294	0.59	-1.0
3,914,618	-	prpB	Sama_3294	0.59	-0.7
3,914,675	-	prpB	Sama_3294	0.66	-0.6
3,914,719	-	prpB	Sama_3294	0.71	-2.7
3,914,719	-	prpB	Sama_3294	0.71	-3.4
3,914,719	-	prpB	Sama_3294	0.71	-1.8
3,914,765	-	prpB	Sama_3294	0.76	-1.0
3,914,792	-	prpB	Sama_3294	0.79	-0.3
3,914,792	-	prpB	Sama_3294	0.79	-2.2
3,914,833	-	prpB	Sama_3294	0.83	-1.2
3,914,909	-				-0.3
3,914,923	+				+0.0
3,914,923	+				-2.3
3,914,924	-				-1.7
3,914,924	-				-0.5
3,914,924	-				-0.6
3,914,924	-				-1.1
3,914,924	-				-0.3
3,914,924	-				-1.0
3,914,924	-				-1.8
3,914,924	-				+0.5
3,914,977	+				+0.2
3,914,977	+				-0.1
3,914,977	+				-1.4
3,914,977	+				+0.4
3,914,977	+				+1.4
3,914,977	+				+0.3
3,914,977	+				+0.6
3,914,977	+				+0.4
3,914,978	-				+0.6
3,914,978	-				+0.1
3,914,978	-				-0.6
3,914,978	-				-0.6
3,914,999	+				+0.4
3,915,000	-				-0.9
3,915,000	-				-1.0
3,915,000	-				-0.1
3,915,000	-				-0.9
3,915,000	-				+0.3
3,915,032	+				-0.3
3,915,032	+				-0.3
3,915,032	+				-0.3
3,915,033	-				+0.1
3,915,033	-				+0.4
3,915,033	-				-0.4
3,915,046	+				-0.0
3,915,046	+				-0.7
3,915,046	+				+1.0
3,915,046	+				-1.0
3,915,047	-				+0.1
3,915,047	-				-2.1
3,915,047	-				+0.0
3,915,087	+				-0.1
3,915,087	+				-0.4
3,915,087	+				-0.6
3,915,088	-				+0.4
3,915,088	-				-1.3
3,915,088	-				+0.0
3,915,094	+				-1.0
3,915,094	+				-1.7
3,915,095	-				+0.8
3,915,186	+				+0.2
3,915,248	+				-1.6
3,915,248	+				+1.2
3,915,249	-				+0.9
3,915,252	+				-0.3
3,915,252	+				+0.3
3,915,252	+				-0.2
3,915,252	+				+0.3
3,915,252	+				-0.6
3,915,252	+				+0.9
3,915,252	+				+0.6
3,915,252	+				+1.6
3,915,252	+				+1.0
3,915,252	+				+0.0
3,915,253	-				+1.5
3,915,253	-				-1.0
3,915,253	-				+0.0
3,915,274	+				+0.7
3,915,274	+				-0.2
3,915,274	+				-0.2
3,915,275	-				+0.2
3,915,275	-				-0.2
3,915,275	-				-1.1
3,915,275	-				-1.4
3,915,283	+		Sama_3295	0.10	-1.3
3,915,283	+		Sama_3295	0.10	+0.9
3,915,284	-		Sama_3295	0.10	+0.5
3,915,290	+		Sama_3295	0.11	-0.2
3,915,290	+		Sama_3295	0.11	+1.6
3,915,379	+		Sama_3295	0.18	-0.1
3,915,379	+		Sama_3295	0.18	+0.4
3,915,380	-		Sama_3295	0.19	-0.5
3,915,380	-		Sama_3295	0.19	+0.1
3,915,380	-		Sama_3295	0.19	-1.5
3,915,380	-		Sama_3295	0.19	+0.3
3,915,380	-		Sama_3295	0.19	+0.8
3,915,489	+		Sama_3295	0.28	+0.2
3,915,489	+		Sama_3295	0.28	+0.4
3,915,489	+		Sama_3295	0.28	+0.2
3,915,490	-		Sama_3295	0.28	-1.4
3,915,490	-		Sama_3295	0.28	+0.7
3,915,490	-		Sama_3295	0.28	-1.3
3,915,490	-		Sama_3295	0.28	+0.4
3,915,490	-		Sama_3295	0.28	+0.3
3,915,490	-		Sama_3295	0.28	+0.1
3,915,490	-		Sama_3295	0.28	-1.2
3,915,490	-		Sama_3295	0.28	-1.2
3,915,490	-		Sama_3295	0.28	+0.8
3,915,539	+		Sama_3295	0.33	+0.9
3,915,539	+		Sama_3295	0.33	-0.0
3,915,539	+		Sama_3295	0.33	-0.1
3,915,539	+		Sama_3295	0.33	-1.7
3,915,539	+		Sama_3295	0.33	-0.1
3,915,540	-		Sama_3295	0.33	-0.5
3,915,540	-		Sama_3295	0.33	+0.5
3,915,540	-		Sama_3295	0.33	+0.7
3,915,540	-		Sama_3295	0.33	+1.4
3,915,540	-		Sama_3295	0.33	-0.8
3,915,580	+		Sama_3295	0.36	-1.4
3,915,581	-		Sama_3295	0.36	-0.4
3,915,587	-		Sama_3295	0.37	-0.4
3,915,710	+		Sama_3295	0.48	+0.3
3,915,710	+		Sama_3295	0.48	+0.2
3,915,710	+		Sama_3295	0.48	-0.4
3,915,711	-		Sama_3295	0.48	-0.3
3,915,711	-		Sama_3295	0.48	+0.3
3,915,711	-		Sama_3295	0.48	+0.7
3,915,711	-		Sama_3295	0.48	-0.0
3,915,711	-		Sama_3295	0.48	+0.4
3,915,711	-		Sama_3295	0.48	-0.3
3,915,711	-		Sama_3295	0.48	-0.4
3,915,724	+		Sama_3295	0.49	+0.5
3,915,725	-		Sama_3295	0.49	+0.1
3,915,756	+		Sama_3295	0.52	-0.1
3,915,757	-		Sama_3295	0.52	-0.5
3,915,757	-		Sama_3295	0.52	-1.7
3,915,870	+		Sama_3295	0.62	-0.6
3,915,871	-		Sama_3295	0.62	-1.0
3,915,908	+		Sama_3295	0.65	-0.4
3,915,908	+		Sama_3295	0.65	-0.0
3,915,908	+		Sama_3295	0.65	+0.4
3,915,908	+		Sama_3295	0.65	-0.1
3,915,909	-		Sama_3295	0.65	-0.9
3,915,965	-		Sama_3295	0.70	+0.3
3,916,027	+		Sama_3295	0.75	-0.2
3,916,074	+		Sama_3295	0.80	+0.0
3,916,074	+		Sama_3295	0.80	+0.1
3,916,074	+		Sama_3295	0.80	-0.8
3,916,075	-		Sama_3295	0.80	+0.2
3,916,075	-		Sama_3295	0.80	+1.6
3,916,075	-		Sama_3295	0.80	+1.2
3,916,102	-		Sama_3295	0.82	+0.2
3,916,102	-		Sama_3295	0.82	+0.0
3,916,130	-		Sama_3295	0.85	+1.6
3,916,170	-		Sama_3295	0.88	+0.4
3,916,170	-		Sama_3295	0.88	+0.7
3,916,170	-		Sama_3295	0.88	-0.6
3,916,170	-		Sama_3295	0.88	+0.4
3,916,170	-		Sama_3295	0.88	-0.6
3,916,175	+		Sama_3295	0.88	-0.5
3,916,175	+		Sama_3295	0.88	+0.4
3,916,175	+		Sama_3295	0.88	+0.2
3,916,175	+		Sama_3295	0.88	-0.4
3,916,175	+		Sama_3295	0.88	-0.8
3,916,175	+		Sama_3295	0.88	-0.3
3,916,175	+		Sama_3295	0.88	-0.6
3,916,176	-		Sama_3295	0.89	+0.2
3,916,176	-		Sama_3295	0.89	-0.2
3,916,176	-		Sama_3295	0.89	+0.3
3,916,255	+				+1.0
3,916,255	+				+0.0
3,916,255	+				-0.3
3,916,256	-				+0.0
3,916,307	-				-2.1
3,916,447	-				+0.6
3,916,524	+				-1.0
3,916,578	+				-2.5
3,916,578	+				-1.6
3,916,859	-		Sama_3296	0.18	-1.2