Strain Fitness in Shewanella amazonensis SB2B around Sama_3293

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
3,912,341	+				+1.3
3,912,341	+				+0.2
3,912,341	+				-0.5
3,912,341	+				-0.3
3,912,341	+				+0.6
3,912,342	-				-0.2
3,912,373	+				+0.7
3,912,373	+				-0.3
3,912,373	+				-0.8
3,912,373	+				+0.3
3,912,374	-				-0.1
3,912,374	-				-1.2
3,912,374	-				-0.4
3,912,374	-				-0.0
3,912,374	-				-0.3
3,912,374	-				-0.4
3,912,374	-				-1.3
3,912,374	-				-0.6
3,912,377	+				+0.5
3,912,377	+				-0.6
3,912,377	+				+0.1
3,912,377	+				+0.9
3,912,377	+				-0.8
3,912,378	-				+0.8
3,912,378	-				+0.6
3,912,378	-				-0.7
3,912,378	-				-0.4
3,912,378	-				-0.3
3,912,378	-				-0.1
3,912,378	-				-1.1
3,912,399	+				+0.6
3,912,399	+				-0.3
3,912,399	+				+0.7
3,912,399	+				+0.4
3,912,399	+				-0.6
3,912,399	+				-0.2
3,912,399	+				-0.2
3,912,400	-				+0.7
3,912,400	-				-0.4
3,912,400	-				+0.1
3,912,401	+				+2.6
3,912,401	+				+0.8
3,912,401	+				-0.3
3,912,402	-				+2.2
3,912,411	+				+1.6
3,912,424	+				+0.5
3,912,424	+				-0.4
3,912,425	-				-0.0
3,912,452	-				+0.2
3,912,460	+				+2.0
3,912,461	-				-0.2
3,912,461	-				+0.0
3,912,464	+				+0.0
3,912,464	+				+0.2
3,912,465	-				+0.8
3,912,467	-				+0.3
3,912,548	+				-0.7
3,912,548	+				+0.9
3,912,555	+		Sama_3292	0.11	-0.4
3,912,565	+		Sama_3292	0.13	-0.7
3,912,565	+		Sama_3292	0.13	-1.2
3,912,565	+		Sama_3292	0.13	-0.2
3,912,565	+		Sama_3292	0.13	+0.5
3,912,565	+		Sama_3292	0.13	+0.8
3,912,565	+		Sama_3292	0.13	-0.3
3,912,565	+		Sama_3292	0.13	-3.5
3,912,565	+		Sama_3292	0.13	-0.4
3,912,566	-		Sama_3292	0.13	-1.0
3,912,566	-		Sama_3292	0.13	+1.1
3,912,566	-		Sama_3292	0.13	-1.0
3,912,566	-		Sama_3292	0.13	-0.0
3,912,566	-		Sama_3292	0.13	-1.0
3,912,594	+		Sama_3292	0.19	+0.8
3,912,595	-		Sama_3292	0.19	+0.1
3,912,638	+		Sama_3292	0.28	+2.0
3,912,639	-		Sama_3292	0.29	-2.0
3,912,639	-		Sama_3292	0.29	+0.6
3,912,639	-		Sama_3292	0.29	-0.2
3,912,715	+		Sama_3292	0.44	-0.7
3,912,808	+		Sama_3292	0.64	+0.4
3,912,808	+		Sama_3292	0.64	-0.0
3,912,809	-		Sama_3292	0.64	+2.0
3,912,809	-		Sama_3292	0.64	-0.2
3,912,809	-		Sama_3292	0.64	+0.6
3,912,809	-		Sama_3292	0.64	-0.6
3,912,809	-		Sama_3292	0.64	+0.6
3,912,918	+		Sama_3292	0.87	-2.4
3,912,918	+		Sama_3292	0.87	+1.0
3,912,918	+		Sama_3292	0.87	-1.5
3,912,919	-		Sama_3292	0.87	+0.3
3,912,919	-		Sama_3292	0.87	-0.7
3,912,919	-		Sama_3292	0.87	-0.1
3,912,924	+		Sama_3292	0.88	-1.1
3,912,924	+		Sama_3292	0.88	-0.5
3,912,924	+		Sama_3292	0.88	-0.5
3,912,924	+		Sama_3292	0.88	+0.2
3,912,996	-				+0.4
3,913,023	+				-0.5
3,913,023	+				+1.3
3,913,023	+				-0.3
3,913,023	+				+0.4
3,913,024	-				-2.5
3,913,024	-				-1.1
3,913,024	-				-0.8
3,913,038	+				+0.0
3,913,039	-				+0.0
3,913,039	-				-0.0
3,913,464	+		Sama_3293	0.18	-0.2
3,913,465	-		Sama_3293	0.18	-0.3
3,913,465	-		Sama_3293	0.18	+0.1
3,913,465	-		Sama_3293	0.18	+0.8
3,913,465	-		Sama_3293	0.18	+1.9
3,913,465	-		Sama_3293	0.18	-1.4
3,913,554	+		Sama_3293	0.29	+0.0
3,913,555	-		Sama_3293	0.29	+0.8
3,913,616	+		Sama_3293	0.37	-0.1
3,913,616	+		Sama_3293	0.37	-1.0
3,913,616	+		Sama_3293	0.37	-0.6
3,913,616	+		Sama_3293	0.37	+0.7
3,913,617	-		Sama_3293	0.37	-1.4
3,913,617	-		Sama_3293	0.37	-0.0
3,913,617	-		Sama_3293	0.37	-0.8
3,913,617	-		Sama_3293	0.37	-0.6
3,913,617	-		Sama_3293	0.37	-1.6
3,913,617	-		Sama_3293	0.37	+0.6
3,913,617	-		Sama_3293	0.37	-0.5
3,913,617	-		Sama_3293	0.37	+0.0
3,913,617	-		Sama_3293	0.37	-1.2
3,913,617	-		Sama_3293	0.37	-0.2
3,913,672	+		Sama_3293	0.45	-0.1
3,913,672	+		Sama_3293	0.45	-0.2
3,913,673	-		Sama_3293	0.45	-0.4
3,913,746	-		Sama_3293	0.54	-1.2
3,913,746	-		Sama_3293	0.54	-1.1
3,913,746	-		Sama_3293	0.54	-0.6
3,913,838	+		Sama_3293	0.66	-0.2
3,913,839	-		Sama_3293	0.66	+0.7
3,913,839	-		Sama_3293	0.66	-0.3
3,913,856	+		Sama_3293	0.68	+0.2
3,913,856	+		Sama_3293	0.68	-0.1
3,913,856	+		Sama_3293	0.68	-0.4
3,913,856	+		Sama_3293	0.68	-0.0
3,913,856	+		Sama_3293	0.68	-0.7
3,913,856	+		Sama_3293	0.68	-1.0
3,913,856	+		Sama_3293	0.68	-0.7
3,913,857	-		Sama_3293	0.69	-0.6
3,913,857	-		Sama_3293	0.69	+1.4
3,913,857	-		Sama_3293	0.69	+0.0
3,913,862	+		Sama_3293	0.69	+0.4
3,913,863	-		Sama_3293	0.69	-0.7
3,913,863	-		Sama_3293	0.69	-0.1
3,913,917	+		Sama_3293	0.76	-0.3
3,913,917	+		Sama_3293	0.76	-0.7
3,913,918	-		Sama_3293	0.77	-1.1
3,913,918	-		Sama_3293	0.77	-0.4
3,913,976	-		Sama_3293	0.84	+0.6
3,914,012	-		Sama_3293	0.89	+0.1
3,914,056	+				+1.1
3,914,057	-				-0.2
3,914,057	-				+0.4
3,914,069	-				-0.1
3,914,069	-				-1.1
3,914,079	+				+0.7
3,914,080	-				-0.8
3,914,080	-				-2.3
3,914,159	+				-1.2
3,914,159	+				-1.2
3,914,159	+				-1.8
3,914,160	-				-1.1
3,914,164	-				-1.6
3,914,164	-				-0.5
3,914,177	-				-1.1
3,914,177	-				-0.9
3,914,218	+	prpB	Sama_3294	0.14	-1.4
3,914,218	+	prpB	Sama_3294	0.14	-1.4
3,914,218	+	prpB	Sama_3294	0.14	+1.2
3,914,219	-	prpB	Sama_3294	0.14	+2.0
3,914,219	-	prpB	Sama_3294	0.14	-0.7
3,914,219	-	prpB	Sama_3294	0.14	-1.5
3,914,251	+	prpB	Sama_3294	0.18	-1.0
3,914,251	+	prpB	Sama_3294	0.18	-1.0
3,914,251	+	prpB	Sama_3294	0.18	-3.9
3,914,251	+	prpB	Sama_3294	0.18	+0.3
3,914,252	-	prpB	Sama_3294	0.18	-0.5
3,914,252	-	prpB	Sama_3294	0.18	-1.7
3,914,252	-	prpB	Sama_3294	0.18	-0.7
3,914,252	-	prpB	Sama_3294	0.18	-2.1
3,914,252	-	prpB	Sama_3294	0.18	-0.2
3,914,348	+	prpB	Sama_3294	0.29	-1.0
3,914,428	-	prpB	Sama_3294	0.38	-1.7
3,914,428	-	prpB	Sama_3294	0.38	-0.6
3,914,428	-	prpB	Sama_3294	0.38	-0.6
3,914,428	-	prpB	Sama_3294	0.38	-0.3
3,914,428	-	prpB	Sama_3294	0.38	-2.0
3,914,599	-	prpB	Sama_3294	0.57	+0.1
3,914,601	-	prpB	Sama_3294	0.57	-2.5
3,914,601	-	prpB	Sama_3294	0.57	-0.5
3,914,601	-	prpB	Sama_3294	0.57	-1.2
3,914,617	+	prpB	Sama_3294	0.59	-1.7
3,914,617	+	prpB	Sama_3294	0.59	+0.7
3,914,617	+	prpB	Sama_3294	0.59	-2.0
3,914,618	-	prpB	Sama_3294	0.59	-1.0
3,914,618	-	prpB	Sama_3294	0.59	-0.7
3,914,675	-	prpB	Sama_3294	0.66	-0.6
3,914,719	-	prpB	Sama_3294	0.71	-2.7
3,914,719	-	prpB	Sama_3294	0.71	-3.4
3,914,719	-	prpB	Sama_3294	0.71	-1.8
3,914,765	-	prpB	Sama_3294	0.76	-1.0
3,914,792	-	prpB	Sama_3294	0.79	-0.3
3,914,792	-	prpB	Sama_3294	0.79	-2.2
3,914,833	-	prpB	Sama_3294	0.83	-1.2
3,914,909	-				-0.3
3,914,923	+				+0.0
3,914,923	+				-2.3
3,914,924	-				-1.7
3,914,924	-				-0.5
3,914,924	-				-0.6
3,914,924	-				-1.1
3,914,924	-				-0.3
3,914,924	-				-1.0
3,914,924	-				-1.8
3,914,924	-				+0.5
3,914,977	+				+0.2
3,914,977	+				-0.1
3,914,977	+				-1.4
3,914,977	+				+0.4
3,914,977	+				+1.4
3,914,977	+				+0.3
3,914,977	+				+0.6
3,914,977	+				+0.4
3,914,978	-				+0.6
3,914,978	-				+0.1
3,914,978	-				-0.6
3,914,978	-				-0.6
3,914,999	+				+0.4
3,915,000	-				-0.9
3,915,000	-				-1.0
3,915,000	-				-0.1
3,915,000	-				-0.9
3,915,000	-				+0.3
3,915,032	+				-0.3
3,915,032	+				-0.3
3,915,032	+				-0.3
3,915,033	-				+0.1
3,915,033	-				+0.4
3,915,033	-				-0.4
3,915,046	+				-0.0
3,915,046	+				-0.7
3,915,046	+				+1.0
3,915,046	+				-1.0
3,915,047	-				+0.1
3,915,047	-				-2.1
3,915,047	-				+0.0
3,915,087	+				-0.1
3,915,087	+				-0.4
3,915,087	+				-0.6
3,915,088	-				+0.4
3,915,088	-				-1.3
3,915,088	-				+0.0
3,915,094	+				-1.0
3,915,094	+				-1.7
3,915,095	-				+0.8