Strain Fitness in Shewanella amazonensis SB2B around Sama_3292

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
3,911,524	+		Sama_3291	0.73	+0.0
3,911,549	+		Sama_3291	0.76	+0.6
3,911,550	-		Sama_3291	0.76	-0.7
3,911,558	+		Sama_3291	0.77	+0.0
3,911,558	+		Sama_3291	0.77	+0.3
3,911,558	+		Sama_3291	0.77	-0.4
3,911,559	-		Sama_3291	0.77	+0.3
3,911,594	+		Sama_3291	0.80	-1.1
3,911,595	-		Sama_3291	0.80	+0.7
3,911,595	-		Sama_3291	0.80	+0.6
3,911,717	+				+0.0
3,911,717	+				-0.6
3,911,718	-				+1.8
3,911,750	-				-0.8
3,911,750	-				-0.2
3,911,803	+				+0.0
3,911,803	+				-0.4
3,911,804	-				+1.3
3,911,804	-				-0.7
3,911,804	-				-0.4
3,911,807	+				-0.2
3,911,807	+				-0.2
3,911,808	-				+0.2
3,911,808	-				+0.2
3,911,808	-				+0.2
3,911,860	+				+0.4
3,911,860	+				+0.9
3,911,860	+				+0.6
3,911,861	-				-0.8
3,911,861	-				+0.1
3,911,862	-				-0.7
3,911,871	-				-0.3
3,911,897	+				-0.8
3,911,913	+				+1.2
3,911,914	-				-1.0
3,911,914	-				-0.0
3,911,914	-				-0.2
3,911,916	+				-2.1
3,911,916	+				-0.3
3,911,916	+				-0.7
3,911,916	+				+0.2
3,911,916	+				+0.4
3,911,916	+				+0.2
3,911,916	+				+0.4
3,911,916	+				-0.3
3,911,916	+				+1.0
3,911,916	+				+0.3
3,911,916	+				+0.5
3,911,917	-				-0.2
3,911,917	-				+0.3
3,911,917	-				-0.3
3,911,917	-				-1.0
3,911,917	-				-0.1
3,911,917	-				-0.6
3,911,917	-				+0.5
3,911,917	-				-0.0
3,911,917	-				+0.5
3,911,921	+				+0.2
3,911,921	+				-0.1
3,911,921	+				-0.4
3,911,921	+				-0.8
3,911,921	+				+1.9
3,911,921	+				-0.5
3,911,921	+				-0.2
3,911,922	-				-0.1
3,911,922	-				+0.0
3,911,922	-				+0.6
3,911,923	+				-0.4
3,911,923	+				+0.7
3,911,923	+				-0.8
3,911,923	+				+1.6
3,911,924	-				+0.3
3,911,959	+				-0.8
3,911,959	+				+0.4
3,911,959	+				-1.0
3,911,991	+				+0.3
3,912,008	+				+1.6
3,912,008	+				-0.5
3,912,009	-				-0.8
3,912,127	+				-0.6
3,912,128	-				+0.0
3,912,128	-				-0.1
3,912,156	+				+0.6
3,912,157	-				+0.2
3,912,171	+				+0.6
3,912,171	+				+0.7
3,912,171	+				-1.2
3,912,171	+				-0.7
3,912,171	+				+0.3
3,912,171	+				+1.2
3,912,171	+				+1.9
3,912,171	+				-0.8
3,912,171	+				+1.6
3,912,171	+				-0.0
3,912,171	+				+0.0
3,912,171	+				+0.6
3,912,171	+				-1.6
3,912,171	+				-1.0
3,912,171	+				-0.0
3,912,171	+				-1.2
3,912,171	+				+0.5
3,912,171	+				-0.3
3,912,171	+				+0.7
3,912,171	+				-0.7
3,912,171	+				+0.2
3,912,171	+				-0.3
3,912,172	-				+0.3
3,912,172	-				-0.1
3,912,172	-				-0.6
3,912,172	-				-0.8
3,912,172	-				+0.5
3,912,172	-				+0.2
3,912,172	-				-0.2
3,912,172	-				+0.2
3,912,172	-				+0.4
3,912,172	-				+0.4
3,912,172	-				+0.4
3,912,172	-				+0.6
3,912,172	-				+0.4
3,912,172	-				+0.4
3,912,172	-				-0.6
3,912,172	-				-0.5
3,912,173	+				-1.3
3,912,173	+				-0.8
3,912,173	+				-0.3
3,912,173	+				-0.7
3,912,173	+				+0.6
3,912,173	+				-0.4
3,912,174	-				+0.3
3,912,174	-				-1.3
3,912,174	-				+0.3
3,912,174	-				+0.2
3,912,174	-				+0.3
3,912,174	-				+2.1
3,912,175	+				-0.4
3,912,175	+				-0.0
3,912,175	+				-0.8
3,912,175	+				-0.4
3,912,175	+				-1.4
3,912,175	+				+0.6
3,912,175	+				-0.4
3,912,175	+				-0.3
3,912,176	-				+0.4
3,912,176	-				+0.1
3,912,176	-				+0.7
3,912,176	-				-0.1
3,912,176	-				+0.9
3,912,176	-				+0.0
3,912,185	+				-0.2
3,912,185	+				-0.7
3,912,186	-				-0.0
3,912,186	-				+0.5
3,912,186	-				+0.0
3,912,228	-				-0.3
3,912,246	+				-1.2
3,912,247	-				-0.4
3,912,251	+				-0.7
3,912,251	+				-0.1
3,912,252	-				+0.2
3,912,252	-				+0.2
3,912,252	-				-0.4
3,912,252	-				-0.5
3,912,252	-				-0.9
3,912,252	-				-0.5
3,912,252	-				+0.2
3,912,252	-				-1.0
3,912,252	-				-1.1
3,912,252	-				+0.4
3,912,252	-				+0.0
3,912,252	-				+0.0
3,912,252	-				-1.2
3,912,252	-				-0.2
3,912,253	+				+2.4
3,912,253	+				+0.6
3,912,253	+				-0.1
3,912,253	+				-1.0
3,912,253	+				-1.0
3,912,254	-				+0.1
3,912,254	-				+0.5
3,912,254	-				+0.0
3,912,258	+				-2.4
3,912,258	+				+0.6
3,912,258	+				-0.2
3,912,258	+				-1.0
3,912,258	+				-1.2
3,912,258	+				-0.1
3,912,258	+				-0.4
3,912,258	+				-0.2
3,912,258	+				-0.2
3,912,259	-				-0.9
3,912,259	-				+0.7
3,912,259	-				+0.2
3,912,259	-				-0.5
3,912,259	-				+1.1
3,912,259	-				+0.4
3,912,259	-				-1.2
3,912,259	-				-0.9
3,912,259	-				-1.6
3,912,259	-				-0.7
3,912,259	-				-0.2
3,912,259	-				+0.6
3,912,259	-				-1.4
3,912,259	-				-1.1
3,912,260	+				-0.7
3,912,272	+				-0.2
3,912,341	+				+1.3
3,912,341	+				+0.2
3,912,341	+				-0.5
3,912,341	+				-0.3
3,912,341	+				+0.6
3,912,342	-				-0.2
3,912,373	+				+0.7
3,912,373	+				-0.3
3,912,373	+				-0.8
3,912,373	+				+0.3
3,912,374	-				-0.1
3,912,374	-				-1.2
3,912,374	-				-0.4
3,912,374	-				-0.0
3,912,374	-				-0.3
3,912,374	-				-0.4
3,912,374	-				-1.3
3,912,374	-				-0.6
3,912,377	+				+0.5
3,912,377	+				-0.6
3,912,377	+				+0.1
3,912,377	+				+0.9
3,912,377	+				-0.8
3,912,378	-				+0.8
3,912,378	-				+0.6
3,912,378	-				-0.7
3,912,378	-				-0.4
3,912,378	-				-0.3
3,912,378	-				-0.1
3,912,378	-				-1.1
3,912,399	+				+0.6
3,912,399	+				-0.3
3,912,399	+				+0.7
3,912,399	+				+0.4
3,912,399	+				-0.6
3,912,399	+				-0.2
3,912,399	+				-0.2
3,912,400	-				+0.7
3,912,400	-				-0.4
3,912,400	-				+0.1
3,912,401	+				+2.6
3,912,401	+				+0.8
3,912,401	+				-0.3
3,912,402	-				+2.2
3,912,411	+				+1.6
3,912,424	+				+0.5
3,912,424	+				-0.4
3,912,425	-				-0.0
3,912,452	-				+0.2
3,912,460	+				+2.0
3,912,461	-				-0.2
3,912,461	-				+0.0
3,912,464	+				+0.0
3,912,464	+				+0.2
3,912,465	-				+0.8
3,912,467	-				+0.3
3,912,548	+				-0.7
3,912,548	+				+0.9
3,912,555	+		Sama_3292	0.11	-0.4
3,912,565	+		Sama_3292	0.13	-0.7
3,912,565	+		Sama_3292	0.13	-1.2
3,912,565	+		Sama_3292	0.13	-0.2
3,912,565	+		Sama_3292	0.13	+0.5
3,912,565	+		Sama_3292	0.13	+0.8
3,912,565	+		Sama_3292	0.13	-0.3
3,912,565	+		Sama_3292	0.13	-3.5
3,912,565	+		Sama_3292	0.13	-0.4
3,912,566	-		Sama_3292	0.13	-1.0
3,912,566	-		Sama_3292	0.13	+1.1
3,912,566	-		Sama_3292	0.13	-1.0
3,912,566	-		Sama_3292	0.13	-0.0
3,912,566	-		Sama_3292	0.13	-1.0
3,912,594	+		Sama_3292	0.19	+0.8
3,912,595	-		Sama_3292	0.19	+0.1
3,912,638	+		Sama_3292	0.28	+2.0
3,912,639	-		Sama_3292	0.29	-2.0
3,912,639	-		Sama_3292	0.29	+0.6
3,912,639	-		Sama_3292	0.29	-0.2
3,912,715	+		Sama_3292	0.44	-0.7
3,912,808	+		Sama_3292	0.64	+0.4
3,912,808	+		Sama_3292	0.64	-0.0
3,912,809	-		Sama_3292	0.64	+2.0
3,912,809	-		Sama_3292	0.64	-0.2
3,912,809	-		Sama_3292	0.64	+0.6
3,912,809	-		Sama_3292	0.64	-0.6
3,912,809	-		Sama_3292	0.64	+0.6
3,912,918	+		Sama_3292	0.87	-2.4
3,912,918	+		Sama_3292	0.87	+1.0
3,912,918	+		Sama_3292	0.87	-1.5
3,912,919	-		Sama_3292	0.87	+0.3
3,912,919	-		Sama_3292	0.87	-0.7
3,912,919	-		Sama_3292	0.87	-0.1
3,912,924	+		Sama_3292	0.88	-1.1
3,912,924	+		Sama_3292	0.88	-0.5
3,912,924	+		Sama_3292	0.88	-0.5
3,912,924	+		Sama_3292	0.88	+0.2
3,912,996	-				+0.4
3,913,023	+				-0.5
3,913,023	+				+1.3
3,913,023	+				-0.3
3,913,023	+				+0.4
3,913,024	-				-2.5
3,913,024	-				-1.1
3,913,024	-				-0.8
3,913,038	+				+0.0
3,913,039	-				+0.0
3,913,039	-				-0.0
3,913,464	+		Sama_3293	0.18	-0.2
3,913,465	-		Sama_3293	0.18	-0.3
3,913,465	-		Sama_3293	0.18	+0.1
3,913,465	-		Sama_3293	0.18	+0.8
3,913,465	-		Sama_3293	0.18	+1.9
3,913,465	-		Sama_3293	0.18	-1.4
3,913,554	+		Sama_3293	0.29	+0.0
3,913,555	-		Sama_3293	0.29	+0.8
3,913,616	+		Sama_3293	0.37	-0.1
3,913,616	+		Sama_3293	0.37	-1.0
3,913,616	+		Sama_3293	0.37	-0.6
3,913,616	+		Sama_3293	0.37	+0.7
3,913,617	-		Sama_3293	0.37	-1.4
3,913,617	-		Sama_3293	0.37	-0.0
3,913,617	-		Sama_3293	0.37	-0.8
3,913,617	-		Sama_3293	0.37	-0.6
3,913,617	-		Sama_3293	0.37	-1.6
3,913,617	-		Sama_3293	0.37	+0.6
3,913,617	-		Sama_3293	0.37	-0.5
3,913,617	-		Sama_3293	0.37	+0.0
3,913,617	-		Sama_3293	0.37	-1.2
3,913,617	-		Sama_3293	0.37	-0.2
3,913,672	+		Sama_3293	0.45	-0.1
3,913,672	+		Sama_3293	0.45	-0.2
3,913,673	-		Sama_3293	0.45	-0.4
3,913,746	-		Sama_3293	0.54	-1.2
3,913,746	-		Sama_3293	0.54	-1.1
3,913,746	-		Sama_3293	0.54	-0.6
3,913,838	+		Sama_3293	0.66	-0.2
3,913,839	-		Sama_3293	0.66	+0.7
3,913,839	-		Sama_3293	0.66	-0.3
3,913,856	+		Sama_3293	0.68	+0.2
3,913,856	+		Sama_3293	0.68	-0.1
3,913,856	+		Sama_3293	0.68	-0.4
3,913,856	+		Sama_3293	0.68	-0.0
3,913,856	+		Sama_3293	0.68	-0.7
3,913,856	+		Sama_3293	0.68	-1.0
3,913,856	+		Sama_3293	0.68	-0.7
3,913,857	-		Sama_3293	0.69	-0.6
3,913,857	-		Sama_3293	0.69	+1.4
3,913,857	-		Sama_3293	0.69	+0.0
3,913,862	+		Sama_3293	0.69	+0.4
3,913,863	-		Sama_3293	0.69	-0.7
3,913,863	-		Sama_3293	0.69	-0.1
3,913,917	+		Sama_3293	0.76	-0.3
3,913,917	+		Sama_3293	0.76	-0.7
3,913,918	-		Sama_3293	0.77	-1.1
3,913,918	-		Sama_3293	0.77	-0.4
3,913,976	-		Sama_3293	0.84	+0.6