Strain Fitness in Shewanella amazonensis SB2B around Sama_2805

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
3,343,425	+		Sama_2804	0.38	+0.0
3,343,426	-		Sama_2804	0.39	+0.2
3,343,426	-		Sama_2804	0.39	+0.5
3,343,429	+		Sama_2804	0.39	+1.4
3,343,429	+		Sama_2804	0.39	-0.8
3,343,429	+		Sama_2804	0.39	+0.4
3,343,429	+		Sama_2804	0.39	-0.5
3,343,429	+		Sama_2804	0.39	-0.7
3,343,429	+		Sama_2804	0.39	-0.4
3,343,429	+		Sama_2804	0.39	+0.6
3,343,429	+		Sama_2804	0.39	-0.3
3,343,429	+		Sama_2804	0.39	-1.3
3,343,429	+		Sama_2804	0.39	+0.4
3,343,429	+		Sama_2804	0.39	+0.6
3,343,429	+		Sama_2804	0.39	+0.3
3,343,430	-		Sama_2804	0.39	+0.3
3,343,430	-		Sama_2804	0.39	-0.4
3,343,430	-		Sama_2804	0.39	+0.3
3,343,430	-		Sama_2804	0.39	+0.7
3,343,430	-		Sama_2804	0.39	+1.4
3,343,430	-		Sama_2804	0.39	-0.8
3,343,430	-		Sama_2804	0.39	+0.3
3,343,438	+		Sama_2804	0.39	+0.0
3,343,613	+		Sama_2804	0.51	+2.0
3,343,652	-		Sama_2804	0.54	+0.3
3,343,657	+		Sama_2804	0.54	+0.4
3,343,658	-		Sama_2804	0.54	-0.2
3,343,662	+		Sama_2804	0.55	+0.2
3,343,662	+		Sama_2804	0.55	+0.6
3,343,663	-		Sama_2804	0.55	-0.4
3,343,663	-		Sama_2804	0.55	-1.3
3,343,663	-		Sama_2804	0.55	+0.1
3,343,663	-		Sama_2804	0.55	-1.0
3,343,663	-		Sama_2804	0.55	-0.2
3,343,663	-		Sama_2804	0.55	+0.4
3,343,746	+		Sama_2804	0.60	-1.0
3,343,747	-		Sama_2804	0.60	+0.4
3,343,747	-		Sama_2804	0.60	-0.1
3,343,784	+		Sama_2804	0.63	+0.3
3,343,784	+		Sama_2804	0.63	+0.3
3,343,785	-		Sama_2804	0.63	-0.7
3,343,785	-		Sama_2804	0.63	-0.3
3,343,785	-		Sama_2804	0.63	-0.0
3,344,003	-		Sama_2804	0.78	+0.6
3,344,080	+		Sama_2804	0.83	+1.1
3,344,080	+		Sama_2804	0.83	+0.1
3,344,080	+		Sama_2804	0.83	+0.1
3,344,080	+		Sama_2804	0.83	+0.8
3,344,080	+		Sama_2804	0.83	-0.2
3,344,080	+		Sama_2804	0.83	+0.9
3,344,080	+		Sama_2804	0.83	+1.8
3,344,080	+		Sama_2804	0.83	-1.8
3,344,080	+		Sama_2804	0.83	-0.5
3,344,080	+		Sama_2804	0.83	+0.6
3,344,080	+		Sama_2804	0.83	-0.7
3,344,081	-		Sama_2804	0.83	-0.1
3,344,081	-		Sama_2804	0.83	-0.4
3,344,081	-		Sama_2804	0.83	+0.4
3,344,081	-		Sama_2804	0.83	+0.3
3,344,081	-		Sama_2804	0.83	+0.6
3,344,081	-		Sama_2804	0.83	+0.5
3,344,081	-		Sama_2804	0.83	-0.4
3,344,081	-		Sama_2804	0.83	-0.4
3,344,081	-		Sama_2804	0.83	-0.5
3,344,081	-		Sama_2804	0.83	-0.2
3,344,105	+		Sama_2804	0.85	+0.6
3,344,136	-		Sama_2804	0.87	+0.4
3,344,136	-		Sama_2804	0.87	+1.7
3,344,187	-				-0.6
3,344,187	-				+0.4
3,344,198	+				+1.4
3,344,199	-				+1.4
3,344,212	+				+0.2
3,344,212	+				+0.0
3,344,213	-				+3.2
3,344,234	+				+1.7
3,344,235	-				-1.7
3,344,281	-				+0.0
3,344,301	+				-0.6
3,344,311	-				+0.2
3,344,378	+				-2.3
3,344,378	+				-0.7
3,344,378	+				-0.0
3,344,379	-				-0.1
3,344,390	+				-0.6
3,344,390	+				+1.7
3,344,391	-				-0.7
3,344,417	+				-0.4
3,344,438	+				+0.4
3,344,438	+				-0.2
3,344,439	-				-1.4
3,344,439	-				+0.7
3,344,442	+				-0.0
3,344,442	+				-0.2
3,344,442	+				-1.5
3,344,442	+				+0.0
3,344,443	-				+0.2
3,344,443	-				+0.7
3,344,443	-				+0.8
3,344,507	+				-1.4
3,344,507	+				+1.1
3,344,507	+				+1.4
3,344,507	+				-1.0
3,344,507	+				+1.1
3,344,507	+				-0.8
3,344,507	+				-0.7
3,344,508	-				-0.9
3,344,508	-				+0.4
3,344,508	-				+0.3
3,344,508	-				+1.4
3,344,508	-				+0.8
3,344,508	-				-1.0
3,344,685	+		Sama_2805	0.23	+0.1
3,344,685	+		Sama_2805	0.23	+0.9
3,344,685	+		Sama_2805	0.23	+0.7
3,344,686	-		Sama_2805	0.24	-1.0
3,344,841	+		Sama_2805	0.37	+0.8
3,344,841	+		Sama_2805	0.37	+0.0
3,344,841	+		Sama_2805	0.37	-2.4
3,344,841	+		Sama_2805	0.37	-0.7
3,344,841	+		Sama_2805	0.37	+0.0
3,344,842	-		Sama_2805	0.37	+1.0
3,344,842	-		Sama_2805	0.37	+0.3
3,344,842	-		Sama_2805	0.37	+0.7
3,344,842	-		Sama_2805	0.37	+1.4
3,344,842	-		Sama_2805	0.37	-0.1
3,344,842	-		Sama_2805	0.37	-0.2
3,344,955	+		Sama_2805	0.47	+0.2
3,344,955	+		Sama_2805	0.47	+0.4
3,344,981	+		Sama_2805	0.49	+1.0
3,344,981	+		Sama_2805	0.49	+0.4
3,344,981	+		Sama_2805	0.49	+0.6
3,344,982	-		Sama_2805	0.49	-0.7
3,344,982	-		Sama_2805	0.49	-0.3
3,344,982	-		Sama_2805	0.49	+2.2
3,344,982	-		Sama_2805	0.49	-0.2
3,344,982	-		Sama_2805	0.49	+0.4
3,344,982	-		Sama_2805	0.49	+0.2
3,344,982	-		Sama_2805	0.49	+0.3
3,344,982	-		Sama_2805	0.49	-0.5
3,345,044	+		Sama_2805	0.55	+0.8
3,345,045	-		Sama_2805	0.55	-2.6
3,345,045	-		Sama_2805	0.55	+0.1
3,345,060	+		Sama_2805	0.56	-1.2
3,345,078	+		Sama_2805	0.58	+0.2
3,345,079	-		Sama_2805	0.58	-1.0
3,345,079	-		Sama_2805	0.58	+0.5
3,345,127	+		Sama_2805	0.62	+0.4
3,345,129	-		Sama_2805	0.62	+1.7
3,345,309	+		Sama_2805	0.78	+0.4
3,345,309	+		Sama_2805	0.78	+0.6
3,345,309	+		Sama_2805	0.78	-1.9
3,345,309	+		Sama_2805	0.78	+0.2
3,345,310	-		Sama_2805	0.78	-0.3
3,345,310	-		Sama_2805	0.78	-0.9
3,345,313	+		Sama_2805	0.78	-0.7
3,345,313	+		Sama_2805	0.78	-0.1
3,345,313	+		Sama_2805	0.78	+0.3
3,345,314	-		Sama_2805	0.78	+1.4
3,345,314	-		Sama_2805	0.78	+0.3
3,345,360	+		Sama_2805	0.82	+0.4
3,345,364	-		Sama_2805	0.83	+0.8
3,345,376	+		Sama_2805	0.84	+0.2
3,345,383	+		Sama_2805	0.84	+0.6
3,345,383	+		Sama_2805	0.84	+0.7
3,345,384	-		Sama_2805	0.84	-0.7
3,345,405	-		Sama_2805	0.86	-0.1
3,345,416	+		Sama_2805	0.87	+0.8
3,345,416	+		Sama_2805	0.87	-1.9
3,345,416	+		Sama_2805	0.87	+0.2
3,345,452	-				-0.1
3,345,475	+				-1.0
3,345,476	-				+0.7
3,345,510	+				-0.0
3,345,510	+				-1.5
3,345,510	+				+0.7
3,345,510	+				-0.2
3,345,511	-				+0.9
3,345,511	-				-0.4
3,345,511	-				-0.0
3,345,511	-				+0.7
3,345,514	+				-0.4
3,345,514	+				-2.6
3,345,515	-				+0.9
3,345,515	-				+0.0
3,345,515	-				-2.3
3,345,515	-				-0.9
3,345,536	+				-0.9
3,345,536	+				-0.2
3,345,537	-				+0.1
3,345,537	-				-0.0
3,345,537	-				+1.1
3,345,546	+				-0.2
3,345,546	+				-0.2
3,345,553	+				+1.0
3,345,566	-				-0.2
3,345,725	+		Sama_2806	0.43	+1.0
3,345,726	-		Sama_2806	0.43	-0.6
3,345,783	-		Sama_2806	0.58	+1.1
3,345,806	+		Sama_2806	0.64	-0.4
3,345,807	-		Sama_2806	0.64	+0.7
3,345,807	-		Sama_2806	0.64	+0.4
3,345,834	-		Sama_2806	0.71	+0.5
3,345,876	-		Sama_2806	0.83	+1.4
3,345,883	+		Sama_2806	0.84	-1.2
3,345,894	+		Sama_2806	0.87	+0.6
3,345,894	+		Sama_2806	0.87	-0.5
3,345,895	-		Sama_2806	0.88	+0.0
3,345,895	-		Sama_2806	0.88	+0.7
3,345,895	-		Sama_2806	0.88	+0.4
3,345,915	+				+0.6
3,345,915	+				-0.1
3,345,915	+				+1.2
3,345,915	+				+1.0
3,345,916	-				-0.9
3,345,916	-				-0.9
3,345,928	+				+0.7
3,345,929	-				-0.1
3,345,945	+				+0.5
3,345,945	+				-0.3
3,345,945	+				-1.2
3,345,945	+				+0.9
3,345,968	-				+0.4
3,345,968	-				+0.2
3,346,072	+				-1.4
3,346,072	+				+0.1
3,346,072	+				-0.3
3,346,115	+				-0.8
3,346,115	+				-0.8
3,346,115	+				+1.1
3,346,115	+				+0.2
3,346,116	-				+0.0
3,346,132	+				-0.2
3,346,155	+				+0.5
3,346,156	-				+0.4
3,346,205	+				+2.4
3,346,206	-				-0.6
3,346,206	-				-0.5
3,346,213	+				+0.8
3,346,213	+				-1.6
3,346,213	+				-0.1
3,346,214	-				-0.6
3,346,214	-				+0.3
3,346,288	+	purT	Sama_2807	0.13	+0.1
3,346,289	-	purT	Sama_2807	0.13	-0.5
3,346,289	-	purT	Sama_2807	0.13	-1.6
3,346,313	+	purT	Sama_2807	0.15	+0.2
3,346,313	+	purT	Sama_2807	0.15	+1.5
3,346,313	+	purT	Sama_2807	0.15	+0.3
3,346,313	+	purT	Sama_2807	0.15	-0.3
3,346,314	-	purT	Sama_2807	0.15	+0.9
3,346,314	-	purT	Sama_2807	0.15	+1.0
3,346,314	-	purT	Sama_2807	0.15	+1.0
3,346,483	+	purT	Sama_2807	0.29	-0.4
3,346,483	+	purT	Sama_2807	0.29	-0.7
3,346,484	-	purT	Sama_2807	0.29	+0.0
3,346,527	+	purT	Sama_2807	0.33	-0.6
3,346,527	+	purT	Sama_2807	0.33	+0.2
3,346,527	+	purT	Sama_2807	0.33	-0.0
3,346,527	+	purT	Sama_2807	0.33	+0.1
3,346,527	+	purT	Sama_2807	0.33	-1.3
3,346,527	+	purT	Sama_2807	0.33	-1.3
3,346,527	+	purT	Sama_2807	0.33	+0.6
3,346,527	+	purT	Sama_2807	0.33	+0.7
3,346,527	+	purT	Sama_2807	0.33	+0.7
3,346,527	+	purT	Sama_2807	0.33	+0.5
3,346,527	+	purT	Sama_2807	0.33	+0.5
3,346,528	-	purT	Sama_2807	0.33	-0.4
3,346,528	-	purT	Sama_2807	0.33	+0.3
3,346,528	-	purT	Sama_2807	0.33	-0.8
3,346,528	-	purT	Sama_2807	0.33	+0.4
3,346,528	-	purT	Sama_2807	0.33	+1.2
3,346,528	-	purT	Sama_2807	0.33	+0.5
3,346,528	-	purT	Sama_2807	0.33	+0.1