Strain Fitness in Shewanella amazonensis SB2B around Sama_2781

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
3,322,545	-				+0.7
3,322,552	+				+0.3
3,322,635	-				-0.0
3,322,659	-				+0.8
3,322,667	-				-0.3
3,322,692	-				+0.6
3,322,777	-		Sama_2780	0.13	-0.1
3,322,902	-		Sama_2780	0.27	+0.1
3,322,937	+		Sama_2780	0.31	-1.5
3,323,100	-		Sama_2780	0.50	+0.1
3,323,101	+		Sama_2780	0.50	-0.4
3,323,176	-		Sama_2780	0.59	-0.5
3,323,190	+		Sama_2780	0.60	-1.1
3,323,223	+		Sama_2780	0.64	-1.2
3,323,224	-		Sama_2780	0.64	+0.2
3,323,224	-		Sama_2780	0.64	+1.4
3,323,224	-		Sama_2780	0.64	-0.2
3,323,224	-		Sama_2780	0.64	-0.9
3,323,224	-		Sama_2780	0.64	-0.6
3,323,224	-		Sama_2780	0.64	-0.0
3,323,224	-		Sama_2780	0.64	-0.8
3,323,233	-		Sama_2780	0.65	-0.3
3,323,236	-		Sama_2780	0.66	+0.2
3,323,239	-		Sama_2780	0.66	+0.1
3,323,239	-		Sama_2780	0.66	-0.0
3,323,277	-		Sama_2780	0.70	+0.4
3,323,286	-		Sama_2780	0.71	+0.4
3,323,310	+		Sama_2780	0.74	+0.1
3,323,322	-		Sama_2780	0.76	-0.6
3,323,353	+		Sama_2780	0.79	+0.9
3,323,354	-		Sama_2780	0.79	+0.9
3,323,354	-		Sama_2780	0.79	+0.2
3,323,356	-		Sama_2780	0.79	+0.5
3,323,356	-		Sama_2780	0.79	+0.3
3,323,356	-		Sama_2780	0.79	-1.9
3,323,367	+		Sama_2780	0.81	+0.9
3,323,368	-		Sama_2780	0.81	-0.4
3,323,408	+		Sama_2780	0.85	+0.6
3,323,409	-		Sama_2780	0.86	-0.2
3,323,418	-		Sama_2780	0.87	+0.8
3,323,437	-		Sama_2780	0.89	-0.4
3,323,460	-				+1.4
3,323,460	-				-0.1
3,323,514	+				+0.2
3,323,523	+				-1.8
3,323,524	-				-0.5
3,323,535	-				+0.5
3,323,535	-				+0.7
3,323,579	+				+0.7
3,323,723	-		Sama_2781	0.25	+0.8
3,323,766	+		Sama_2781	0.31	-0.0
3,323,766	+		Sama_2781	0.31	-0.6
3,323,768	+		Sama_2781	0.31	+1.4
3,323,768	+		Sama_2781	0.31	+0.4
3,323,769	-		Sama_2781	0.31	+0.1
3,323,776	+		Sama_2781	0.32	+0.5
3,323,872	-		Sama_2781	0.45	+0.4
3,323,876	+		Sama_2781	0.45	+0.1
3,323,876	+		Sama_2781	0.45	-0.6
3,323,930	-		Sama_2781	0.52	+0.1
3,323,930	-		Sama_2781	0.52	+0.1
3,323,930	-		Sama_2781	0.52	-0.7
3,323,930	-		Sama_2781	0.52	-0.2
3,323,930	-		Sama_2781	0.52	-0.4
3,323,933	+		Sama_2781	0.53	-0.6
3,323,986	-		Sama_2781	0.60	-0.2
3,324,086	-		Sama_2781	0.73	+0.5
3,324,086	-		Sama_2781	0.73	-0.5
3,324,089	-		Sama_2781	0.73	+0.8
3,324,134	+		Sama_2781	0.79	+0.8
3,324,135	-		Sama_2781	0.79	+0.4
3,324,135	-		Sama_2781	0.79	+0.3
3,324,147	+		Sama_2781	0.81	+0.8
3,324,147	+		Sama_2781	0.81	-1.5
3,324,148	-		Sama_2781	0.81	+1.0
3,324,174	-		Sama_2781	0.84	+0.7
3,324,177	+		Sama_2781	0.85	+0.4
3,324,205	+		Sama_2781	0.88	+0.9
3,324,205	+		Sama_2781	0.88	+0.5
3,324,224	-				-1.2
3,324,224	-				+0.2
3,324,231	-				+3.0
3,324,231	-				+0.2
3,324,235	+				+0.2
3,324,235	+				-1.6
3,324,235	+				+0.0
3,324,244	+				+0.3
3,324,245	-				-0.1
3,324,253	+				-0.3
3,324,253	+				+0.7
3,324,253	+				-0.2
3,324,254	-				+1.8
3,324,254	-				-0.6
3,324,282	-				+0.5
3,324,296	+				+1.0
3,324,297	-				+0.0
3,324,304	+				+0.1
3,324,305	-				+0.7
3,324,320	-				+1.1
3,324,320	-				-1.0
3,324,332	-				+0.0
3,324,339	+				+0.4
3,324,349	-				+0.4
3,324,369	+				-0.2
3,324,370	-				-0.3
3,324,382	+				+1.4
3,324,383	-				-0.1
3,324,383	-				+0.3
3,324,516	+				+1.2
3,324,517	-				-1.0
3,324,624	+				-1.5
3,324,624	+				-0.3
3,324,624	+				+1.1
3,324,624	+				+1.1
3,324,640	-				+1.1
3,324,640	-				-0.1
3,324,648	+				+0.0
3,324,648	+				+0.3
3,324,721	-		Sama_2782	0.14	-0.4
3,324,721	-		Sama_2782	0.14	-2.0
3,324,721	-		Sama_2782	0.14	-0.2
3,324,721	-		Sama_2782	0.14	+0.4
3,324,721	-		Sama_2782	0.14	+0.4
3,324,721	-		Sama_2782	0.14	+0.4
3,324,725	+		Sama_2782	0.14	+0.3
3,324,725	+		Sama_2782	0.14	+1.2
3,324,725	+		Sama_2782	0.14	+1.4
3,324,725	+		Sama_2782	0.14	+1.1
3,324,726	-		Sama_2782	0.15	-1.2
3,324,726	-		Sama_2782	0.15	-0.9
3,324,726	-		Sama_2782	0.15	+0.4
3,324,770	+		Sama_2782	0.19	-0.4
3,324,771	-		Sama_2782	0.19	+0.3
3,324,772	+		Sama_2782	0.19	+0.2
3,324,772	+		Sama_2782	0.19	+0.2
3,324,772	+		Sama_2782	0.19	+0.9
3,324,772	+		Sama_2782	0.19	+0.1
3,324,772	+		Sama_2782	0.19	-1.2
3,324,772	+		Sama_2782	0.19	+1.0
3,324,773	-		Sama_2782	0.20	-0.8
3,324,773	-		Sama_2782	0.20	+0.8
3,324,773	-		Sama_2782	0.20	+0.7
3,324,773	-		Sama_2782	0.20	-0.2
3,324,773	-		Sama_2782	0.20	-0.4
3,324,773	-		Sama_2782	0.20	-0.8
3,324,773	-		Sama_2782	0.20	+0.2
3,324,773	-		Sama_2782	0.20	+0.1
3,324,773	-		Sama_2782	0.20	+1.1
3,324,773	-		Sama_2782	0.20	-0.6
3,324,773	-		Sama_2782	0.20	+0.4
3,324,773	-		Sama_2782	0.20	-1.8
3,324,773	-		Sama_2782	0.20	-0.8
3,325,112	+		Sama_2782	0.56	-0.6
3,325,112	+		Sama_2782	0.56	-0.2
3,325,113	-		Sama_2782	0.56	-1.0
3,325,113	-		Sama_2782	0.56	-0.1
3,325,156	+		Sama_2782	0.61	+0.5
3,325,172	-		Sama_2782	0.62	+1.4
3,325,172	-		Sama_2782	0.62	+0.2
3,325,172	-		Sama_2782	0.62	+0.8
3,325,172	-		Sama_2782	0.62	-0.2