Strain Fitness in Shewanella amazonensis SB2B around Sama_1907

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
2,334,388	+		Sama_1906	0.43	+0.8
2,334,576	+		Sama_1906	0.61	-1.3
2,334,577	-		Sama_1906	0.61	+0.4
2,334,577	-		Sama_1906	0.61	+1.3
2,334,577	-		Sama_1906	0.61	+0.0
2,334,679	-		Sama_1906	0.70	+0.0
2,334,754	-		Sama_1906	0.77	+1.0
2,334,792	+		Sama_1906	0.81	+0.4
2,334,804	+		Sama_1906	0.82	-0.8
2,334,805	-		Sama_1906	0.82	+0.7
2,334,805	-		Sama_1906	0.82	-0.6
2,334,860	-		Sama_1906	0.87	+0.5
2,334,860	-		Sama_1906	0.87	+0.3
2,334,874	+		Sama_1906	0.88	+1.1
2,334,874	+		Sama_1906	0.88	+0.4
2,334,875	-		Sama_1906	0.88	+1.8
2,334,875	-		Sama_1906	0.88	+1.0
2,334,950	+				+2.0
2,334,951	-				+0.0
2,334,951	-				-0.3
2,334,951	-				+1.0
2,334,951	-				-2.4
2,334,970	+				-0.3
2,334,971	-				+0.4
2,334,971	-				+0.2
2,334,980	-				+1.9
2,334,992	-				+0.8
2,335,077	+				+1.0
2,335,078	-				-0.6
2,335,138	+				+1.6
2,335,139	-				-0.3
2,335,139	-				+1.8
2,335,241	+				-1.1
2,335,241	+				+0.1
2,335,245	-				+0.0
2,335,266	+				-0.2
2,335,267	-				-1.6
2,335,306	+				+0.0
2,335,307	-				-0.1
2,335,349	-				-0.6
2,335,376	-				+1.7
2,335,376	-				-0.1
2,335,381	+				+1.0
2,335,487	-				-0.8
2,335,529	-		Sama_1907	0.13	-0.6
2,335,529	-		Sama_1907	0.13	-0.3
2,335,535	-		Sama_1907	0.14	+0.6
2,335,535	-		Sama_1907	0.14	-1.7
2,335,537	-		Sama_1907	0.14	-1.8
2,335,537	-		Sama_1907	0.14	-1.9
2,335,537	-		Sama_1907	0.14	-0.2
2,335,537	-		Sama_1907	0.14	-0.7
2,335,537	-		Sama_1907	0.14	+0.5
2,335,537	-		Sama_1907	0.14	+1.0
2,335,618	-		Sama_1907	0.22	+1.6
2,335,640	-		Sama_1907	0.24	-1.6
2,335,720	-		Sama_1907	0.31	+0.0
2,335,758	-		Sama_1907	0.35	-1.0
2,335,758	-		Sama_1907	0.35	+0.1
2,335,825	-		Sama_1907	0.41	-0.6
2,335,825	-		Sama_1907	0.41	-1.0
2,335,825	-		Sama_1907	0.41	-1.1
2,335,832	-		Sama_1907	0.42	-0.6
2,335,832	-		Sama_1907	0.42	-1.0
2,335,832	-		Sama_1907	0.42	-1.3
2,335,909	-		Sama_1907	0.49	-1.8
2,335,987	-		Sama_1907	0.56	+1.0
2,336,096	+		Sama_1907	0.66	+0.0
2,336,097	-		Sama_1907	0.67	-1.0
2,336,196	-		Sama_1907	0.76	-2.6
2,336,196	-		Sama_1907	0.76	-1.8
2,336,196	-		Sama_1907	0.76	-2.4
2,336,196	-		Sama_1907	0.76	+0.5
2,337,411	-				-1.8
2,337,441	+				-0.3
2,337,441	+				+0.3
2,337,442	-				-1.6
2,337,442	-				-0.8