Strain Fitness in Shewanella amazonensis SB2B around Sama_1906

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
2,332,917	+		Sama_1905	0.68	+0.3
2,332,917	+		Sama_1905	0.68	+0.6
2,332,918	-		Sama_1905	0.68	+0.8
2,332,918	-		Sama_1905	0.68	+1.0
2,332,918	-		Sama_1905	0.68	-0.2
2,332,918	-		Sama_1905	0.68	-0.6
2,332,918	-		Sama_1905	0.68	+0.7
2,332,920	-		Sama_1905	0.68	+0.8
2,332,920	-		Sama_1905	0.68	+1.9
2,332,943	-		Sama_1905	0.69	+0.7
2,333,189	+		Sama_1905	0.76	+0.3
2,333,189	+		Sama_1905	0.76	+1.0
2,333,224	+		Sama_1905	0.78	+0.0
2,333,224	+		Sama_1905	0.78	+0.8
2,333,225	-		Sama_1905	0.78	+1.5
2,333,242	+		Sama_1905	0.78	+0.1
2,333,242	+		Sama_1905	0.78	+1.4
2,333,243	-		Sama_1905	0.78	-0.0
2,333,376	+		Sama_1905	0.82	+1.1
2,333,376	+		Sama_1905	0.82	+0.3
2,333,377	-		Sama_1905	0.82	+0.6
2,333,443	-		Sama_1905	0.85	+0.5
2,333,454	+		Sama_1905	0.85	+1.4
2,333,578	+		Sama_1905	0.89	-0.6
2,333,579	-		Sama_1905	0.89	+0.6
2,333,812	-				+0.6
2,333,967	+				+0.3
2,334,072	+		Sama_1906	0.14	-0.1
2,334,126	+		Sama_1906	0.19	+0.9
2,334,126	+		Sama_1906	0.19	+0.8
2,334,127	-		Sama_1906	0.19	+0.8
2,334,127	-		Sama_1906	0.19	+0.6
2,334,127	-		Sama_1906	0.19	+0.1
2,334,128	+		Sama_1906	0.19	-0.6
2,334,128	+		Sama_1906	0.19	+0.4
2,334,128	+		Sama_1906	0.19	+1.6
2,334,128	+		Sama_1906	0.19	+0.9
2,334,128	+		Sama_1906	0.19	+1.0
2,334,129	-		Sama_1906	0.20	+1.8
2,334,129	-		Sama_1906	0.20	-1.1
2,334,129	-		Sama_1906	0.20	+2.4
2,334,129	-		Sama_1906	0.20	-0.3
2,334,129	-		Sama_1906	0.20	+0.4
2,334,129	-		Sama_1906	0.20	+0.6
2,334,130	+		Sama_1906	0.20	+1.0
2,334,130	+		Sama_1906	0.20	+0.0
2,334,130	+		Sama_1906	0.20	-0.2
2,334,130	+		Sama_1906	0.20	+1.2
2,334,130	+		Sama_1906	0.20	-0.2
2,334,130	+		Sama_1906	0.20	+0.6
2,334,130	+		Sama_1906	0.20	+0.4
2,334,130	+		Sama_1906	0.20	+0.5
2,334,130	+		Sama_1906	0.20	+0.4
2,334,130	+		Sama_1906	0.20	+0.0
2,334,130	+		Sama_1906	0.20	+0.8
2,334,130	+		Sama_1906	0.20	-1.2
2,334,130	+		Sama_1906	0.20	+1.4
2,334,130	+		Sama_1906	0.20	+0.6
2,334,130	+		Sama_1906	0.20	+1.0
2,334,130	+		Sama_1906	0.20	+0.8
2,334,130	+		Sama_1906	0.20	+1.0
2,334,131	-		Sama_1906	0.20	+1.5
2,334,131	-		Sama_1906	0.20	+1.1
2,334,131	-		Sama_1906	0.20	+0.6
2,334,131	-		Sama_1906	0.20	+0.9
2,334,131	-		Sama_1906	0.20	-0.8
2,334,131	-		Sama_1906	0.20	+0.3
2,334,131	-		Sama_1906	0.20	+0.4
2,334,131	-		Sama_1906	0.20	-1.1
2,334,131	-		Sama_1906	0.20	+0.5
2,334,131	-		Sama_1906	0.20	+0.4
2,334,131	-		Sama_1906	0.20	+0.9
2,334,131	-		Sama_1906	0.20	+0.8
2,334,131	-		Sama_1906	0.20	+3.4
2,334,134	+		Sama_1906	0.20	+1.3
2,334,134	+		Sama_1906	0.20	-0.2
2,334,134	+		Sama_1906	0.20	+0.9
2,334,134	+		Sama_1906	0.20	+0.5
2,334,134	+		Sama_1906	0.20	+2.4
2,334,134	+		Sama_1906	0.20	+0.3
2,334,135	-		Sama_1906	0.20	+0.6
2,334,135	-		Sama_1906	0.20	+1.8
2,334,135	-		Sama_1906	0.20	-0.2
2,334,135	-		Sama_1906	0.20	+1.6
2,334,154	+		Sama_1906	0.22	+0.7
2,334,155	-		Sama_1906	0.22	+0.5
2,334,156	+		Sama_1906	0.22	+1.8
2,334,157	-		Sama_1906	0.22	+0.7
2,334,157	-		Sama_1906	0.22	+2.3
2,334,177	+		Sama_1906	0.24	+0.6
2,334,177	+		Sama_1906	0.24	-0.6
2,334,178	-		Sama_1906	0.24	+2.6
2,334,266	-		Sama_1906	0.32	+1.0
2,334,283	-		Sama_1906	0.34	+0.2
2,334,313	+		Sama_1906	0.36	+0.6
2,334,313	+		Sama_1906	0.36	-1.6
2,334,314	-		Sama_1906	0.37	+1.3
2,334,388	+		Sama_1906	0.43	+0.8
2,334,576	+		Sama_1906	0.61	-1.3
2,334,577	-		Sama_1906	0.61	+0.4
2,334,577	-		Sama_1906	0.61	+1.3
2,334,577	-		Sama_1906	0.61	+0.0
2,334,679	-		Sama_1906	0.70	+0.0
2,334,754	-		Sama_1906	0.77	+1.0
2,334,792	+		Sama_1906	0.81	+0.4
2,334,804	+		Sama_1906	0.82	-0.8
2,334,805	-		Sama_1906	0.82	+0.7
2,334,805	-		Sama_1906	0.82	-0.6
2,334,860	-		Sama_1906	0.87	+0.5
2,334,860	-		Sama_1906	0.87	+0.3
2,334,874	+		Sama_1906	0.88	+1.1
2,334,874	+		Sama_1906	0.88	+0.4
2,334,875	-		Sama_1906	0.88	+1.8
2,334,875	-		Sama_1906	0.88	+1.0
2,334,950	+				+2.0
2,334,951	-				+0.0
2,334,951	-				-0.3
2,334,951	-				+1.0
2,334,951	-				-2.4
2,334,970	+				-0.3
2,334,971	-				+0.4
2,334,971	-				+0.2
2,334,980	-				+1.9
2,334,992	-				+0.8
2,335,077	+				+1.0
2,335,078	-				-0.6
2,335,138	+				+1.6
2,335,139	-				-0.3
2,335,139	-				+1.8
2,335,241	+				-1.1
2,335,241	+				+0.1
2,335,245	-				+0.0
2,335,266	+				-0.2
2,335,267	-				-1.6
2,335,306	+				+0.0
2,335,307	-				-0.1
2,335,349	-				-0.6
2,335,376	-				+1.7
2,335,376	-				-0.1
2,335,381	+				+1.0
2,335,487	-				-0.8
2,335,529	-		Sama_1907	0.13	-0.6
2,335,529	-		Sama_1907	0.13	-0.3
2,335,535	-		Sama_1907	0.14	+0.6
2,335,535	-		Sama_1907	0.14	-1.7
2,335,537	-		Sama_1907	0.14	-1.8
2,335,537	-		Sama_1907	0.14	-1.9
2,335,537	-		Sama_1907	0.14	-0.2
2,335,537	-		Sama_1907	0.14	-0.7
2,335,537	-		Sama_1907	0.14	+0.5
2,335,537	-		Sama_1907	0.14	+1.0
2,335,618	-		Sama_1907	0.22	+1.6
2,335,640	-		Sama_1907	0.24	-1.6
2,335,720	-		Sama_1907	0.31	+0.0
2,335,758	-		Sama_1907	0.35	-1.0
2,335,758	-		Sama_1907	0.35	+0.1
2,335,825	-		Sama_1907	0.41	-0.6
2,335,825	-		Sama_1907	0.41	-1.0
2,335,825	-		Sama_1907	0.41	-1.1
2,335,832	-		Sama_1907	0.42	-0.6
2,335,832	-		Sama_1907	0.42	-1.0
2,335,832	-		Sama_1907	0.42	-1.3
2,335,909	-		Sama_1907	0.49	-1.8
2,335,987	-		Sama_1907	0.56	+1.0