Strain Fitness in Shewanella amazonensis SB2B around Sama_1783

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
2,174,027	-				-2.2
2,174,081	+				-0.6
2,174,082	-				+1.5
2,174,115	+				-0.6
2,174,144	+				-1.0
2,174,145	-				+1.3
2,174,168	+		Sama_1782	0.13	+0.4
2,174,168	+		Sama_1782	0.13	+1.0
2,174,169	-		Sama_1782	0.14	-0.5
2,174,214	+		Sama_1782	0.20	+0.5
2,174,258	+		Sama_1782	0.27	+0.4
2,174,258	+		Sama_1782	0.27	-0.9
2,174,496	+		Sama_1782	0.63	+1.5
2,174,667	+		Sama_1782	0.89	+0.7
2,174,667	+		Sama_1782	0.89	+0.6
2,174,668	-		Sama_1782	0.89	+0.5
2,174,668	-		Sama_1782	0.89	+0.1
2,174,670	-		Sama_1782	0.90	+0.3
2,174,670	-		Sama_1782	0.90	+0.8
2,174,670	-		Sama_1782	0.90	-0.0
2,174,670	-		Sama_1782	0.90	+0.4
2,174,670	-		Sama_1782	0.90	+0.6
2,174,756	-				+0.6
2,174,756	-				-0.8
2,174,756	-				+0.2
2,174,761	+				+0.2
2,174,776	-				-1.8
2,174,803	+				-0.2
2,174,803	+				+0.2
2,174,804	-				+0.7
2,174,804	-				-0.6
2,174,804	-				+0.6
2,174,846	-				+0.5
2,174,960	+		Sama_1783	0.17	+0.5
2,174,995	-		Sama_1783	0.21	-0.3
2,174,995	-		Sama_1783	0.21	-0.4
2,175,081	-		Sama_1783	0.31	-1.6
2,175,135	+		Sama_1783	0.37	-0.3
2,175,141	-		Sama_1783	0.38	-1.6
2,175,141	-		Sama_1783	0.38	-0.2
2,175,141	-		Sama_1783	0.38	-0.4
2,175,234	+		Sama_1783	0.48	-0.4
2,175,319	-		Sama_1783	0.57	-1.0
2,175,331	-		Sama_1783	0.59	-1.4
2,175,385	-		Sama_1783	0.65	-0.4
2,175,451	-		Sama_1783	0.72	-0.5
2,175,543	-		Sama_1783	0.82	+0.4
2,175,721	+				+0.6
2,175,722	-				+1.7
2,175,722	-				+0.1
2,175,722	-				+0.3
2,175,722	-				+0.1
2,175,722	-				-0.4
2,175,722	-				-0.0
2,175,746	-				-1.0
2,175,796	+				-0.1
2,175,800	-				-0.0
2,175,863	+				+0.5
2,175,864	-				+0.2
2,175,864	-				-0.9
2,175,936	+				-0.3
2,175,937	-				-0.4
2,175,937	-				+0.6
2,175,965	+				+1.3
2,176,004	+		Sama_1784	0.12	-0.6
2,176,084	+		Sama_1784	0.19	-0.1
2,176,085	-		Sama_1784	0.19	+0.6
2,176,085	-		Sama_1784	0.19	-0.6
2,176,103	-		Sama_1784	0.20	-0.2
2,176,103	-		Sama_1784	0.20	-0.0
2,176,112	-		Sama_1784	0.21	+0.2
2,176,112	-		Sama_1784	0.21	-1.4
2,176,142	+		Sama_1784	0.23	-0.0
2,176,268	+		Sama_1784	0.33	-1.1
2,176,269	-		Sama_1784	0.33	-0.3
2,176,375	+		Sama_1784	0.41	+1.6
2,176,378	+		Sama_1784	0.41	-1.0
2,176,439	+		Sama_1784	0.46	+0.6
2,176,439	+		Sama_1784	0.46	-0.0
2,176,563	+		Sama_1784	0.55	-0.1
2,176,593	-		Sama_1784	0.58	-0.4
2,176,613	+		Sama_1784	0.59	+0.4
2,176,613	+		Sama_1784	0.59	-0.6
2,176,668	-		Sama_1784	0.63	+0.9