Strain Fitness in Shewanella amazonensis SB2B around Sama_1729

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
2,116,240	-				+0.4
2,116,284	+				+1.4
2,116,337	+				-0.5
2,116,375	+				-1.0
2,116,376	-				+1.3
2,116,489	+				-0.4
2,116,530	-				-0.3
2,116,645	+		Sama_1729	0.24	+0.5
2,116,646	-		Sama_1729	0.25	-0.8
2,116,646	-		Sama_1729	0.25	-0.5
2,116,646	-		Sama_1729	0.25	-1.6
2,116,646	-		Sama_1729	0.25	-1.0
2,116,647	+		Sama_1729	0.25	-0.0
2,116,647	+		Sama_1729	0.25	-0.3
2,116,648	-		Sama_1729	0.25	-0.0
2,116,648	-		Sama_1729	0.25	-1.2
2,116,648	-		Sama_1729	0.25	-1.0
2,116,662	-		Sama_1729	0.27	-0.6
2,116,689	+		Sama_1729	0.31	+0.3
2,116,690	-		Sama_1729	0.31	-0.0
2,116,690	-		Sama_1729	0.31	+1.0
2,116,815	+		Sama_1729	0.51	-1.1
2,116,854	+		Sama_1729	0.57	-0.6
2,116,907	-		Sama_1729	0.65	-0.2
2,116,907	-		Sama_1729	0.65	+0.2
2,116,936	-		Sama_1729	0.70	-1.2
2,116,974	+		Sama_1729	0.76	-0.5
2,116,974	+		Sama_1729	0.76	-2.0
2,117,013	-		Sama_1729	0.82	-0.8
2,117,013	-		Sama_1729	0.82	-2.3
2,117,074	-				+0.5
2,117,074	-				-0.3
2,117,087	+				+0.1
2,117,088	-				-0.3
2,117,091	+				+0.6
2,117,134	-				-0.2
2,117,872	-				-0.0
2,117,916	-				+0.4
2,117,920	-				+1.0
2,117,929	-				-0.2
2,117,929	-				-0.4
2,117,929	-				-0.2
2,117,930	+				+0.4
2,117,930	+				+0.1
2,117,931	-				+0.4
2,117,931	-				+1.0
2,117,946	+				+0.4
2,117,947	-				+0.2
2,118,048	+				+1.0
2,118,048	+				-0.2
2,118,049	-				-0.2
2,118,078	+				-0.8
2,118,079	-				+1.7
2,118,082	+				-0.6
2,118,083	-				+0.3
2,118,106	+				+0.7