Strain Fitness in Shewanella amazonensis SB2B around Sama_1638

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
2,003,832	+		Sama_1636	0.18	+1.1
2,003,832	+		Sama_1636	0.18	-0.9
2,003,848	+		Sama_1636	0.23	+0.6
2,003,852	+		Sama_1636	0.24	+0.9
2,003,866	+		Sama_1636	0.28	-1.7
2,003,867	-		Sama_1636	0.28	+0.0
2,004,020	+		Sama_1636	0.71	+0.2
2,004,065	+		Sama_1636	0.84	+0.0
2,004,107	-				+0.0
2,004,110	-				+0.3
2,004,115	+				+1.1
2,004,116	-				+1.2
2,004,271	+				-1.3
2,004,310	+		Sama_1637	0.14	+0.4
2,004,310	+		Sama_1637	0.14	+0.8
2,004,316	+		Sama_1637	0.15	+0.3
2,004,399	+		Sama_1637	0.35	+0.5
2,004,453	+		Sama_1637	0.48	+0.2
2,004,489	+		Sama_1637	0.56	-0.8
2,004,505	+		Sama_1637	0.60	+0.1
2,004,506	-		Sama_1637	0.60	-0.4
2,004,506	-		Sama_1637	0.60	-0.1
2,004,747	+				+0.3
2,004,891	+		Sama_1638	0.22	-1.0
2,004,891	+		Sama_1638	0.22	+1.0
2,004,892	-		Sama_1638	0.23	-0.8
2,004,892	-		Sama_1638	0.23	-0.5
2,004,905	+		Sama_1638	0.28	+0.4
2,004,957	-		Sama_1638	0.47	+0.1
2,004,957	-		Sama_1638	0.47	+0.4
2,005,015	-		Sama_1638	0.69	-0.8
2,005,053	+		Sama_1638	0.83	+0.3
2,005,053	+		Sama_1638	0.83	-0.2
2,005,053	+		Sama_1638	0.83	-1.5
2,005,053	+		Sama_1638	0.83	+1.0
2,005,053	+		Sama_1638	0.83	-0.0
2,005,054	-		Sama_1638	0.84	+1.1
2,005,054	-		Sama_1638	0.84	-0.6
2,005,054	-		Sama_1638	0.84	+1.0
2,005,054	-		Sama_1638	0.84	+1.6
2,005,054	-		Sama_1638	0.84	+0.9
2,005,054	-		Sama_1638	0.84	+1.2
2,005,104	-				-0.8