Strain Fitness in Shewanella amazonensis SB2B around Sama_1379

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
1,669,638	+		Sama_1377	0.88	+0.7
1,669,638	+		Sama_1377	0.88	+0.0
1,669,638	+		Sama_1377	0.88	+0.4
1,669,639	-		Sama_1377	0.88	-0.6
1,669,639	-		Sama_1377	0.88	-0.4
1,669,684	+				+1.1
1,669,818	+				-2.2
1,669,819	-				-1.2
1,669,847	-				-1.0
1,669,935	+		Sama_1378	0.14	-1.2
1,669,951	+		Sama_1378	0.16	-0.3
1,669,951	+		Sama_1378	0.16	-0.7
1,669,951	+		Sama_1378	0.16	-0.2
1,669,951	+		Sama_1378	0.16	-1.8
1,669,951	+		Sama_1378	0.16	+0.1
1,669,952	-		Sama_1378	0.16	+0.5
1,670,135	+		Sama_1378	0.40	+0.2
1,670,135	+		Sama_1378	0.40	+0.4
1,670,203	-		Sama_1378	0.49	-0.4
1,670,317	+		Sama_1378	0.63	+0.1
1,670,318	-		Sama_1378	0.64	-0.7
1,670,473	+		Sama_1378	0.84	+0.1
1,670,474	-		Sama_1378	0.84	+0.1
1,670,622	+				-1.3
1,670,622	+				+1.9
1,670,623	-				+0.7
1,670,623	-				-1.3
1,670,623	-				-1.7
1,670,655	-				-1.0
1,670,690	+				+0.3
1,670,690	+				+1.1
1,670,690	+				-1.0
1,670,690	+				-0.9
1,670,690	+				+1.1
1,670,690	+				-1.0
1,670,691	-				-1.9
1,670,691	-				-0.2
1,670,790	+		Sama_1379	0.14	-1.7
1,670,790	+		Sama_1379	0.14	-1.3
1,670,790	+		Sama_1379	0.14	-0.9
1,670,790	+		Sama_1379	0.14	+0.6
1,670,790	+		Sama_1379	0.14	-0.3
1,670,790	+		Sama_1379	0.14	-4.2
1,670,790	+		Sama_1379	0.14	-0.3
1,670,790	+		Sama_1379	0.14	-0.9
1,670,790	+		Sama_1379	0.14	-1.4
1,670,790	+		Sama_1379	0.14	+0.3
1,670,790	+		Sama_1379	0.14	+0.8
1,670,790	+		Sama_1379	0.14	-1.9
1,670,790	+		Sama_1379	0.14	-0.7
1,670,790	+		Sama_1379	0.14	-0.3
1,670,790	+		Sama_1379	0.14	+0.6
1,670,791	-		Sama_1379	0.14	-1.1
1,670,791	-		Sama_1379	0.14	+0.3
1,670,791	-		Sama_1379	0.14	-0.6
1,670,791	-		Sama_1379	0.14	-0.3
1,670,791	-		Sama_1379	0.14	-1.4
1,670,863	+		Sama_1379	0.20	-0.3
1,670,942	-		Sama_1379	0.27	+0.1
1,670,946	+		Sama_1379	0.28	-1.0
1,670,947	-		Sama_1379	0.28	-0.7
1,670,970	+		Sama_1379	0.30	-1.2
1,670,970	+		Sama_1379	0.30	-0.6
1,670,970	+		Sama_1379	0.30	-0.9
1,670,970	+		Sama_1379	0.30	-0.9
1,670,971	-		Sama_1379	0.30	-1.3
1,670,971	-		Sama_1379	0.30	-0.3
1,670,971	-		Sama_1379	0.30	-0.4
1,670,993	+		Sama_1379	0.32	-2.3
1,670,993	+		Sama_1379	0.32	-0.6
1,670,993	+		Sama_1379	0.32	+0.6
1,670,993	+		Sama_1379	0.32	-0.8
1,670,993	+		Sama_1379	0.32	-1.3
1,670,994	-		Sama_1379	0.32	-0.2
1,670,994	-		Sama_1379	0.32	-0.9
1,670,994	-		Sama_1379	0.32	+0.4
1,671,124	-		Sama_1379	0.44	-1.1
1,671,190	+		Sama_1379	0.50	-1.0
1,671,212	+		Sama_1379	0.52	-0.2
1,671,212	+		Sama_1379	0.52	-1.0
1,671,217	+		Sama_1379	0.52	-1.0
1,671,348	+		Sama_1379	0.64	+0.3
1,671,349	-		Sama_1379	0.64	-0.9
1,671,366	+		Sama_1379	0.66	-2.1
1,671,366	+		Sama_1379	0.66	-1.2
1,671,366	+		Sama_1379	0.66	+0.1
1,671,366	+		Sama_1379	0.66	-0.2
1,671,449	+		Sama_1379	0.73	-0.7
1,671,450	-		Sama_1379	0.73	+0.1
1,671,450	-		Sama_1379	0.73	-0.4
1,671,450	-		Sama_1379	0.73	-0.9
1,671,450	-		Sama_1379	0.73	+0.1
1,671,450	-		Sama_1379	0.73	-0.2
1,671,450	-		Sama_1379	0.73	-1.4
1,671,518	+		Sama_1379	0.79	-0.9
1,671,518	+		Sama_1379	0.79	-1.2
1,671,518	+		Sama_1379	0.79	-0.4
1,671,518	+		Sama_1379	0.79	-0.5
1,671,518	+		Sama_1379	0.79	-1.2
1,671,518	+		Sama_1379	0.79	-1.6
1,671,518	+		Sama_1379	0.79	+1.6
1,671,518	+		Sama_1379	0.79	-2.2
1,671,518	+		Sama_1379	0.79	+0.4
1,671,518	+		Sama_1379	0.79	-0.9
1,671,518	+		Sama_1379	0.79	-0.9
1,671,518	+		Sama_1379	0.79	-0.8
1,671,519	-		Sama_1379	0.80	-2.0
1,671,519	-		Sama_1379	0.80	-0.6
1,671,519	-		Sama_1379	0.80	+0.1
1,671,519	-		Sama_1379	0.80	-1.0
1,671,519	-		Sama_1379	0.80	-2.9
1,671,519	-		Sama_1379	0.80	+0.3
1,671,519	-		Sama_1379	0.80	-0.1
1,671,519	-		Sama_1379	0.80	-1.0
1,671,519	-		Sama_1379	0.80	+0.1
1,671,745	+				-0.5
1,671,745	+				+0.8
1,671,745	+				-0.1
1,671,746	-				+0.0
1,671,746	-				-1.0
1,671,746	-				-0.7
1,671,749	+				-1.3
1,671,749	+				-0.1
1,671,749	+				-0.1
1,671,750	-				-0.0
1,671,750	-				+0.1
1,671,750	-				+0.7
1,671,773	-				-0.8
1,671,838	+				-0.1
1,671,838	+				+0.8
1,671,845	+				+0.3
1,671,907	+				-0.2
1,671,908	-				+0.5
1,672,039	+		Sama_1380	0.23	-0.4
1,672,039	+		Sama_1380	0.23	-0.8
1,672,039	+		Sama_1380	0.23	-0.1
1,672,039	+		Sama_1380	0.23	-0.8
1,672,040	-		Sama_1380	0.23	+0.7
1,672,040	-		Sama_1380	0.23	-0.3
1,672,050	+		Sama_1380	0.25	+0.4
1,672,050	+		Sama_1380	0.25	-0.1
1,672,050	+		Sama_1380	0.25	+1.1
1,672,051	-		Sama_1380	0.25	+1.4
1,672,054	+		Sama_1380	0.25	-0.2
1,672,112	-		Sama_1380	0.31	-2.4
1,672,126	+		Sama_1380	0.33	-0.2
1,672,126	+		Sama_1380	0.33	-2.0
1,672,126	+		Sama_1380	0.33	-0.1
1,672,126	+		Sama_1380	0.33	+0.1
1,672,126	+		Sama_1380	0.33	+0.4
1,672,127	-		Sama_1380	0.33	-0.4
1,672,127	-		Sama_1380	0.33	+0.6
1,672,127	-		Sama_1380	0.33	-1.2
1,672,184	+		Sama_1380	0.39	+0.0
1,672,184	+		Sama_1380	0.39	+1.1
1,672,184	+		Sama_1380	0.39	-0.1
1,672,241	+		Sama_1380	0.46	-1.1
1,672,241	+		Sama_1380	0.46	-0.7
1,672,241	+		Sama_1380	0.46	+0.1
1,672,242	-		Sama_1380	0.46	-1.9
1,672,242	-		Sama_1380	0.46	+0.7
1,672,280	+		Sama_1380	0.50	+0.3
1,672,280	+		Sama_1380	0.50	-0.6
1,672,281	-		Sama_1380	0.50	-0.0
1,672,281	-		Sama_1380	0.50	-1.2
1,672,358	+		Sama_1380	0.58	+0.6
1,672,359	-		Sama_1380	0.59	-0.6
1,672,375	+		Sama_1380	0.60	+0.0
1,672,376	-		Sama_1380	0.60	+0.9
1,672,491	+		Sama_1380	0.73	+0.1
1,672,491	+		Sama_1380	0.73	-0.5
1,672,540	-		Sama_1380	0.79	-1.2
1,672,650	+				-1.0
1,672,650	+				-0.2
1,672,650	+				-0.7
1,672,650	+				-0.9
1,672,651	-				+1.1
1,672,651	-				-0.1
1,672,651	-				+0.1
1,672,651	-				+0.1
1,672,697	+				-0.1
1,672,725	-				-0.9
1,672,731	+				-0.1