Strain Fitness in Shewanella amazonensis SB2B around Sama_1372

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
1,662,168	+				+0.6
1,662,422	-				-0.2
1,662,447	+				-0.1
1,662,448	-				+0.1
1,662,521	+		Sama_1371	0.13	+0.1
1,662,524	+		Sama_1371	0.14	-0.9
1,662,525	-		Sama_1371	0.14	-0.4
1,662,636	+		Sama_1371	0.31	+0.8
1,662,636	+		Sama_1371	0.31	+1.5
1,662,637	-		Sama_1371	0.31	+1.4
1,662,765	+		Sama_1371	0.51	-1.9
1,662,765	+		Sama_1371	0.51	+0.5
1,662,765	+		Sama_1371	0.51	+0.7
1,662,798	+		Sama_1371	0.57	+0.3
1,662,798	+		Sama_1371	0.57	-1.0
1,662,819	+		Sama_1371	0.60	-0.4
1,662,819	+		Sama_1371	0.60	-0.0
1,662,820	-		Sama_1371	0.60	+1.1
1,662,820	-		Sama_1371	0.60	+0.3
1,662,914	-		Sama_1371	0.75	+1.6
1,662,925	-		Sama_1371	0.76	+2.0
1,662,966	+		Sama_1371	0.83	-1.3
1,663,047	+				+0.7
1,663,047	+				-0.6
1,663,048	-				+0.7
1,663,048	-				-1.4
1,663,065	+				-0.1
1,663,067	+				+1.9
1,663,068	-				-1.3
1,663,068	-				-0.4
1,663,068	-				+0.6
1,663,068	-				-0.6
1,663,075	-				-0.4
1,663,075	-				-1.4
1,663,200	+				+1.1
1,663,200	+				-0.3
1,663,200	+				+0.3
1,663,200	+				+0.3
1,663,200	+				+0.2
1,663,200	+				+0.5
1,663,200	+				-1.3
1,663,201	-				+0.1
1,663,201	-				-0.3
1,663,201	-				+1.1
1,663,201	-				+0.3
1,663,201	-				+0.8
1,663,201	-				-0.2
1,663,201	-				-0.6
1,663,206	+				-0.8
1,663,207	-				+0.6
1,663,260	+		Sama_1372	0.12	-0.8
1,663,260	+		Sama_1372	0.12	+0.2
1,663,260	+		Sama_1372	0.12	+0.4
1,663,261	-		Sama_1372	0.12	-1.7
1,663,261	-		Sama_1372	0.12	-0.6
1,663,438	-		Sama_1372	0.33	+0.7
1,663,467	+		Sama_1372	0.37	-2.1
1,663,467	+		Sama_1372	0.37	-0.4
1,663,468	-		Sama_1372	0.37	-0.4
1,663,468	-		Sama_1372	0.37	+0.5
1,663,528	-		Sama_1372	0.44	-1.0
1,663,600	+		Sama_1372	0.53	-2.3
1,663,611	-		Sama_1372	0.54	+0.1
1,663,636	-		Sama_1372	0.57	+0.1
1,663,651	+		Sama_1372	0.59	+1.5
1,663,652	-		Sama_1372	0.59	-0.5
1,663,652	-		Sama_1372	0.59	-2.3
1,663,661	+		Sama_1372	0.60	-0.7
1,663,709	+		Sama_1372	0.66	-0.6
1,663,710	-		Sama_1372	0.66	-0.2
1,663,737	-		Sama_1372	0.70	+0.7
1,663,745	+		Sama_1372	0.71	+0.7
1,663,745	+		Sama_1372	0.71	+0.6
1,663,746	-		Sama_1372	0.71	+0.1
1,663,774	+		Sama_1372	0.74	+0.4
1,663,903	+		Sama_1372	0.90	+1.1
1,663,904	-		Sama_1372	0.90	-2.3
1,663,939	-				+0.1
1,663,979	+				-0.9
1,663,979	+				-0.2
1,663,980	-				+0.6
1,663,999	+				-0.3
1,664,000	-				-0.9
1,664,018	+				-0.4
1,664,018	+				+0.6
1,664,038	+				-0.2
1,664,271	-		Sama_1373	0.60	-0.8
1,664,297	+		Sama_1373	0.66	-0.2
1,664,313	+		Sama_1373	0.70	+0.7
1,664,358	-		Sama_1373	0.81	+1.1
1,664,358	-		Sama_1373	0.81	-0.1
1,664,373	+		Sama_1373	0.85	+0.4
1,664,444	-				+1.1
1,664,450	+				-2.6
1,664,456	+				+0.7
1,664,476	+				+0.1
1,664,476	+				-0.5
1,664,477	-				+0.7
1,664,477	-				+0.9
1,664,537	+				+0.7
1,664,537	+				-0.2
1,664,538	-				+0.8
1,664,538	-				+0.1
1,664,538	-				+0.8
1,664,594	+		Sama_1374	0.10	-1.0
1,664,594	+		Sama_1374	0.10	+0.8
1,664,594	+		Sama_1374	0.10	+0.4
1,664,594	+		Sama_1374	0.10	-0.2
1,664,595	-		Sama_1374	0.10	+1.8
1,664,595	-		Sama_1374	0.10	+0.3
1,664,595	-		Sama_1374	0.10	-1.1
1,664,595	-		Sama_1374	0.10	-1.0
1,664,595	-		Sama_1374	0.10	-0.2
1,664,595	-		Sama_1374	0.10	+1.1
1,664,614	-		Sama_1374	0.12	-0.8
1,664,614	-		Sama_1374	0.12	+1.1
1,664,639	+		Sama_1374	0.15	-0.5
1,664,640	-		Sama_1374	0.15	+0.4
1,664,640	-		Sama_1374	0.15	-0.1
1,664,676	+		Sama_1374	0.19	+0.1
1,664,677	-		Sama_1374	0.19	+1.1
1,664,755	-		Sama_1374	0.27	+2.1
1,664,755	-		Sama_1374	0.27	-0.6
1,664,755	-		Sama_1374	0.27	+0.8
1,664,761	+		Sama_1374	0.28	-0.9
1,664,762	-		Sama_1374	0.28	-0.1
1,664,780	+		Sama_1374	0.30	-0.3
1,664,780	+		Sama_1374	0.30	-0.7
1,664,780	+		Sama_1374	0.30	+0.1
1,664,780	+		Sama_1374	0.30	+0.6
1,664,780	+		Sama_1374	0.30	+0.7
1,664,780	+		Sama_1374	0.30	-0.1
1,664,781	-		Sama_1374	0.30	+0.9
1,664,781	-		Sama_1374	0.30	+0.0
1,664,781	-		Sama_1374	0.30	+0.9
1,664,781	-		Sama_1374	0.30	-0.2
1,664,787	+		Sama_1374	0.30	+1.1
1,664,854	+		Sama_1374	0.38	+0.5
1,664,855	-		Sama_1374	0.38	-0.0
1,664,942	+		Sama_1374	0.47	+0.6
1,664,942	+		Sama_1374	0.47	+0.7
1,664,943	-		Sama_1374	0.47	+0.1
1,664,943	-		Sama_1374	0.47	-0.6
1,664,943	-		Sama_1374	0.47	+0.9
1,664,943	-		Sama_1374	0.47	-0.4
1,664,944	+		Sama_1374	0.47	-0.6
1,664,944	+		Sama_1374	0.47	+0.5
1,664,944	+		Sama_1374	0.47	-0.5
1,664,945	-		Sama_1374	0.47	+0.8
1,664,945	-		Sama_1374	0.47	-0.1
1,664,945	-		Sama_1374	0.47	-0.0
1,664,953	+		Sama_1374	0.48	+0.0
1,664,954	-		Sama_1374	0.48	-0.2
1,664,954	-		Sama_1374	0.48	+1.5
1,664,954	-		Sama_1374	0.48	+1.8