Strain Fitness in Shewanella amazonensis SB2B around Sama_1022

Experiment: nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1021 and Sama_1022 overlap by 1 nucleotidesSama_1022 and Sama_1023 are separated by 160 nucleotides Sama_1021: Sama_1021 - thiamine-phosphate kinase (RefSeq), at 1,234,973 to 1,235,974 _1021 Sama_1022: Sama_1022 - phosphatidylglycerophosphatase (RefSeq), at 1,235,974 to 1,236,471 _1022 Sama_1023: Sama_1023 - membrane-bound serine protease (ClpP class)-like protein (RefSeq), at 1,236,632 to 1,238,221 _1023 Position (kb) 1235 1236 1237Strain fitness (log2 ratio) -2 -1 0 1 2at 1236.112 kb on + strand, within Sama_1022at 1236.145 kb on + strand, within Sama_1022at 1236.184 kb on + strand, within Sama_1022at 1236.240 kb on - strand, within Sama_1022at 1236.265 kb on - strand, within Sama_1022at 1236.336 kb on + strand, within Sama_1022at 1236.454 kb on + strandat 1236.454 kb on + strandat 1236.469 kb on + strandat 1236.469 kb on + strandat 1236.469 kb on + strandat 1236.469 kb on + strandat 1236.473 kb on + strandat 1236.473 kb on + strandat 1236.474 kb on - strandat 1236.474 kb on - strandat 1236.474 kb on - strandat 1236.531 kb on + strandat 1236.531 kb on + strandat 1236.531 kb on + strandat 1236.532 kb on - strandat 1236.532 kb on - strandat 1236.532 kb on - strandat 1236.546 kb on + strandat 1236.548 kb on + strandat 1236.548 kb on + strandat 1236.548 kb on + strandat 1236.581 kb on + strandat 1236.581 kb on + strandat 1236.581 kb on + strandat 1236.597 kb on + strandat 1236.597 kb on + strandat 1236.597 kb on + strandat 1236.598 kb on - strandat 1236.598 kb on - strandat 1236.598 kb on - strandat 1236.598 kb on - strandat 1236.631 kb on + strandat 1236.631 kb on + strandat 1236.631 kb on + strandat 1236.640 kb on + strandat 1236.640 kb on + strandat 1236.640 kb on + strandat 1236.640 kb on + strandat 1236.640 kb on + strandat 1236.640 kb on + strandat 1236.640 kb on + strandat 1236.641 kb on - strandat 1236.652 kb on + strandat 1236.652 kb on + strandat 1236.653 kb on - strandat 1236.653 kb on - strandat 1236.682 kb on - strandat 1236.732 kb on + strandat 1236.732 kb on + strandat 1236.808 kb on + strand, within Sama_1023at 1236.808 kb on + strand, within Sama_1023at 1236.809 kb on - strand, within Sama_1023at 1236.809 kb on - strand, within Sama_1023at 1236.809 kb on - strand, within Sama_1023at 1236.809 kb on - strand, within Sama_1023at 1236.835 kb on + strand, within Sama_1023at 1236.836 kb on - strand, within Sama_1023at 1236.836 kb on - strand, within Sama_1023at 1236.846 kb on + strand, within Sama_1023at 1236.885 kb on + strand, within Sama_1023at 1236.898 kb on + strand, within Sama_1023at 1236.899 kb on - strand, within Sama_1023at 1236.899 kb on - strand, within Sama_1023at 1236.899 kb on - strand, within Sama_1023at 1236.899 kb on - strand, within Sama_1023at 1236.967 kb on - strand, within Sama_1023at 1236.978 kb on + strand, within Sama_1023at 1236.991 kb on - strand, within Sama_1023at 1236.998 kb on + strand, within Sama_1023at 1236.999 kb on - strand, within Sama_1023at 1236.999 kb on - strand, within Sama_1023at 1237.050 kb on + strand, within Sama_1023at 1237.050 kb on + strand, within Sama_1023at 1237.050 kb on + strand, within Sama_1023at 1237.050 kb on + strand, within Sama_1023at 1237.051 kb on - strand, within Sama_1023at 1237.051 kb on - strand, within Sama_1023at 1237.070 kb on - strand, within Sama_1023at 1237.116 kb on + strand, within Sama_1023at 1237.187 kb on + strand, within Sama_1023at 1237.187 kb on + strand, within Sama_1023at 1237.187 kb on - strand, within Sama_1023at 1237.187 kb on + strand, within Sama_1023at 1237.187 kb on + strand, within Sama_1023at 1237.187 kb on + strand, within Sama_1023at 1237.187 kb on + strand, within Sama_1023at 1237.188 kb on - strand, within Sama_1023at 1237.188 kb on - strand, within Sama_1023at 1237.188 kb on - strand, within Sama_1023at 1237.188 kb on - strand, within Sama_1023at 1237.188 kb on - strand, within Sama_1023at 1237.188 kb on - strand, within Sama_1023at 1237.188 kb on - strand, within Sama_1023at 1237.188 kb on - strand, within Sama_1023at 1237.188 kb on - strand, within Sama_1023at 1237.188 kb on - strand, within Sama_1023at 1237.188 kb on - strand, within Sama_1023at 1237.188 kb on - strand, within Sama_1023at 1237.189 kb on + strand, within Sama_1023at 1237.189 kb on + strand, within Sama_1023at 1237.190 kb on - strand, within Sama_1023at 1237.190 kb on - strand, within Sama_1023at 1237.190 kb on - strand, within Sama_1023at 1237.196 kb on + strand, within Sama_1023at 1237.196 kb on + strand, within Sama_1023at 1237.197 kb on - strand, within Sama_1023at 1237.236 kb on + strand, within Sama_1023at 1237.254 kb on + strand, within Sama_1023at 1237.292 kb on - strand, within Sama_1023at 1237.330 kb on + strand, within Sama_1023at 1237.330 kb on + strand, within Sama_1023at 1237.331 kb on - strand, within Sama_1023at 1237.331 kb on - strand, within Sama_1023at 1237.355 kb on + strand, within Sama_1023at 1237.355 kb on + strand, within Sama_1023at 1237.355 kb on + strand, within Sama_1023at 1237.355 kb on + strand, within Sama_1023at 1237.356 kb on - strand, within Sama_1023at 1237.357 kb on + strand, within Sama_1023at 1237.358 kb on - strand, within Sama_1023at 1237.377 kb on + strand, within Sama_1023at 1237.377 kb on + strand, within Sama_1023at 1237.377 kb on + strand, within Sama_1023at 1237.377 kb on + strand, within Sama_1023at 1237.378 kb on - strand, within Sama_1023at 1237.378 kb on - strand, within Sama_1023at 1237.378 kb on - strand, within Sama_1023at 1237.465 kb on - strand, within Sama_1023at 1237.470 kb on + strand, within Sama_1023at 1237.471 kb on - strand, within Sama_1023at 1237.471 kb on - strand, within Sama_1023at 1237.471 kb on - strand, within Sama_1023

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 5 mM
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1,236,112 + Sama_1022 0.28 -2.2
1,236,145 + Sama_1022 0.34 -0.7
1,236,184 + Sama_1022 0.42 -0.9
1,236,240 - Sama_1022 0.53 -1.9
1,236,265 - Sama_1022 0.58 -2.0
1,236,336 + Sama_1022 0.73 -0.5
1,236,454 + -0.5
1,236,454 + -0.6
1,236,469 + -0.5
1,236,469 + -0.7
1,236,469 + +0.4
1,236,469 + -0.2
1,236,473 + -0.5
1,236,473 + +0.2
1,236,474 - +0.7
1,236,474 - +0.0
1,236,474 - +0.2
1,236,531 + -0.1
1,236,531 + -0.4
1,236,531 + +0.5
1,236,532 - +0.5
1,236,532 - -0.6
1,236,532 - -1.2
1,236,546 + +0.8
1,236,548 + -0.5
1,236,548 + +0.1
1,236,548 + -0.2
1,236,581 + +0.5
1,236,581 + +0.2
1,236,581 + +0.5
1,236,597 + -1.2
1,236,597 + +0.7
1,236,597 + -0.9
1,236,598 - +0.1
1,236,598 - -1.1
1,236,598 - -0.6
1,236,598 - -0.8
1,236,631 + +0.2
1,236,631 + -0.2
1,236,631 + +0.3
1,236,640 + -0.1
1,236,640 + -0.1
1,236,640 + -1.4
1,236,640 + +0.2
1,236,640 + -0.3
1,236,640 + +0.1
1,236,640 + -1.9
1,236,641 - -0.9
1,236,652 + -0.4
1,236,652 + +0.7
1,236,653 - +0.4
1,236,653 - -0.5
1,236,682 - -0.1
1,236,732 + +0.3
1,236,732 + +0.1
1,236,808 + Sama_1023 0.11 +0.2
1,236,808 + Sama_1023 0.11 -0.4
1,236,809 - Sama_1023 0.11 +0.8
1,236,809 - Sama_1023 0.11 +1.0
1,236,809 - Sama_1023 0.11 +0.1
1,236,809 - Sama_1023 0.11 +0.1
1,236,835 + Sama_1023 0.13 -0.1
1,236,836 - Sama_1023 0.13 +1.9
1,236,836 - Sama_1023 0.13 -2.2
1,236,846 + Sama_1023 0.13 +0.6
1,236,885 + Sama_1023 0.16 -0.1
1,236,898 + Sama_1023 0.17 +0.3
1,236,899 - Sama_1023 0.17 +1.0
1,236,899 - Sama_1023 0.17 -0.7
1,236,899 - Sama_1023 0.17 +0.8
1,236,899 - Sama_1023 0.17 -0.4
1,236,967 - Sama_1023 0.21 -0.3
1,236,978 + Sama_1023 0.22 +1.7
1,236,991 - Sama_1023 0.23 +0.6
1,236,998 + Sama_1023 0.23 -0.4
1,236,999 - Sama_1023 0.23 -0.1
1,236,999 - Sama_1023 0.23 +1.9
1,237,050 + Sama_1023 0.26 +0.3
1,237,050 + Sama_1023 0.26 -0.4
1,237,050 + Sama_1023 0.26 -0.3
1,237,050 + Sama_1023 0.26 +0.6
1,237,051 - Sama_1023 0.26 +1.3
1,237,051 - Sama_1023 0.26 +1.3
1,237,070 - Sama_1023 0.28 -0.1
1,237,116 + Sama_1023 0.30 -0.3
1,237,187 + Sama_1023 0.35 -0.7
1,237,187 + Sama_1023 0.35 +0.7
1,237,187 - Sama_1023 0.35 -0.1
1,237,187 + Sama_1023 0.35 +1.9
1,237,187 + Sama_1023 0.35 +0.5
1,237,187 + Sama_1023 0.35 +1.1
1,237,187 + Sama_1023 0.35 +0.9
1,237,188 - Sama_1023 0.35 +0.3
1,237,188 - Sama_1023 0.35 +0.2
1,237,188 - Sama_1023 0.35 +1.3
1,237,188 - Sama_1023 0.35 -0.4
1,237,188 - Sama_1023 0.35 -0.5
1,237,188 - Sama_1023 0.35 -0.3
1,237,188 - Sama_1023 0.35 +0.2
1,237,188 - Sama_1023 0.35 -0.3
1,237,188 - Sama_1023 0.35 +2.3
1,237,188 - Sama_1023 0.35 +0.2
1,237,188 - Sama_1023 0.35 -2.4
1,237,188 - Sama_1023 0.35 -0.3
1,237,189 + Sama_1023 0.35 +0.7
1,237,189 + Sama_1023 0.35 -0.0
1,237,190 - Sama_1023 0.35 -1.5
1,237,190 - Sama_1023 0.35 -0.1
1,237,190 - Sama_1023 0.35 -0.7
1,237,196 + Sama_1023 0.35 -0.6
1,237,196 + Sama_1023 0.35 +1.5
1,237,197 - Sama_1023 0.36 +1.0
1,237,236 + Sama_1023 0.38 -0.7
1,237,254 + Sama_1023 0.39 +0.5
1,237,292 - Sama_1023 0.42 +0.3
1,237,330 + Sama_1023 0.44 -0.2
1,237,330 + Sama_1023 0.44 +0.8
1,237,331 - Sama_1023 0.44 -1.0
1,237,331 - Sama_1023 0.44 -1.2
1,237,355 + Sama_1023 0.45 +1.1
1,237,355 + Sama_1023 0.45 +0.7
1,237,355 + Sama_1023 0.45 +0.6
1,237,355 + Sama_1023 0.45 -0.3
1,237,356 - Sama_1023 0.46 +2.3
1,237,357 + Sama_1023 0.46 -0.2
1,237,358 - Sama_1023 0.46 -1.0
1,237,377 + Sama_1023 0.47 +0.2
1,237,377 + Sama_1023 0.47 -0.3
1,237,377 + Sama_1023 0.47 +1.1
1,237,377 + Sama_1023 0.47 +1.3
1,237,378 - Sama_1023 0.47 -1.7
1,237,378 - Sama_1023 0.47 -0.8
1,237,378 - Sama_1023 0.47 -0.7
1,237,465 - Sama_1023 0.52 +0.4
1,237,470 + Sama_1023 0.53 +0.3
1,237,471 - Sama_1023 0.53 -0.3
1,237,471 - Sama_1023 0.53 -1.2
1,237,471 - Sama_1023 0.53 -0.8

Or see this region's nucleotide sequence