Strain Fitness in Shewanella amazonensis SB2B around Sama_0835

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
1,017,888	-				-1.4
1,017,888	-				-0.8
1,017,905	-				-0.6
1,017,905	-				+0.5
1,017,910	+				+0.2
1,017,910	+				+0.1
1,017,911	-				-0.5
1,017,915	+				+0.8
1,017,916	-				+0.0
1,017,916	-				+0.4
1,017,932	+				+0.3
1,017,978	+				+0.4
1,017,978	+				+1.3
1,017,978	+				-0.5
1,017,979	-				+1.0
1,017,981	+				-1.9
1,017,981	+				-1.4
1,017,982	-				+0.2
1,017,982	-				-0.3
1,017,982	-				-0.3
1,017,993	+				-0.6
1,017,993	+				-0.3
1,017,996	+				-0.3
1,017,996	+				+0.2
1,017,997	-				+0.2
1,017,997	-				+0.2
1,018,057	+				+0.3
1,018,058	-				+0.7
1,018,077	+				+0.2
1,018,078	-				+0.4
1,018,078	-				-1.3
1,018,078	-				-1.2
1,018,086	-				+0.4
1,018,124	+				-1.4
1,018,125	-				+0.7
1,018,128	+				-0.3
1,018,128	+				+0.7
1,018,128	+				+0.4
1,018,128	+				-1.1
1,018,128	+				+0.1
1,018,128	+				-1.8
1,018,128	+				-0.5
1,018,128	+				-0.2
1,018,128	+				-0.2
1,018,129	-				+1.4
1,018,129	-				-2.0
1,018,129	-				+0.4
1,018,129	-				+0.6
1,018,129	-				-1.1
1,018,137	+				+2.4
1,018,137	+				-1.8
1,018,137	+				+1.4
1,018,137	+				-0.2
1,018,137	+				-0.2
1,018,137	+				+0.4
1,018,137	+				-0.9
1,018,137	+				-0.4
1,018,137	+				+0.2
1,018,137	+				-0.4
1,018,138	-				-0.8
1,018,138	-				-0.9
1,018,138	-				+0.8
1,018,138	-				+0.1
1,018,138	-				+0.2
1,018,149	+				-1.8
1,018,149	+				-0.2
1,018,194	+				-0.9
1,018,194	+				-0.7
1,018,195	-				-0.7
1,018,195	-				+0.4
1,018,195	-				+0.6
1,018,195	-				-0.1
1,018,242	+				-0.8
1,018,242	+				-0.7
1,018,243	-				-0.2
1,018,243	-				-0.4
1,018,321	+		Sama_0835	0.10	-0.4
1,018,321	+		Sama_0835	0.10	+0.8
1,018,322	-		Sama_0835	0.10	+0.4
1,018,445	+		Sama_0835	0.17	-0.4
1,018,445	+		Sama_0835	0.17	-0.9
1,018,477	+		Sama_0835	0.19	+1.0
1,018,477	+		Sama_0835	0.19	+0.2
1,018,478	-		Sama_0835	0.19	+0.2
1,018,481	+		Sama_0835	0.19	+0.5
1,018,481	+		Sama_0835	0.19	-1.6
1,018,482	-		Sama_0835	0.19	+0.2
1,018,502	+		Sama_0835	0.20	+0.3
1,018,502	+		Sama_0835	0.20	-1.4
1,018,505	+		Sama_0835	0.20	+0.6
1,018,505	+		Sama_0835	0.20	-0.1
1,018,505	+		Sama_0835	0.20	-1.2
1,018,505	+		Sama_0835	0.20	-0.6
1,018,506	-		Sama_0835	0.20	+1.6
1,018,506	-		Sama_0835	0.20	-0.4
1,018,506	-		Sama_0835	0.20	-0.0
1,018,506	-		Sama_0835	0.20	-0.1
1,018,506	-		Sama_0835	0.20	-0.1
1,018,506	-		Sama_0835	0.20	-0.2
1,018,506	-		Sama_0835	0.20	-0.2
1,018,506	-		Sama_0835	0.20	+0.2
1,018,506	-		Sama_0835	0.20	-1.6
1,018,506	-		Sama_0835	0.20	+0.2
1,018,511	-		Sama_0835	0.20	-1.6
1,018,517	+		Sama_0835	0.21	+1.4
1,018,682	+		Sama_0835	0.30	+0.2
1,018,683	-		Sama_0835	0.30	-0.2
1,018,699	+		Sama_0835	0.31	-1.2
1,018,699	+		Sama_0835	0.31	-1.6
1,018,699	+		Sama_0835	0.31	-0.2
1,018,699	+		Sama_0835	0.31	-0.6
1,018,699	+		Sama_0835	0.31	-0.4
1,018,699	+		Sama_0835	0.31	+0.2
1,018,699	+		Sama_0835	0.31	-1.6
1,018,699	+		Sama_0835	0.31	+0.1
1,018,699	+		Sama_0835	0.31	-0.0
1,018,700	-		Sama_0835	0.31	-0.6
1,018,700	-		Sama_0835	0.31	-0.2
1,018,700	-		Sama_0835	0.31	-0.6
1,018,700	-		Sama_0835	0.31	-1.2
1,018,700	-		Sama_0835	0.31	-1.6
1,018,700	-		Sama_0835	0.31	-1.0
1,018,700	-		Sama_0835	0.31	+0.5
1,018,700	-		Sama_0835	0.31	-0.5
1,018,700	-		Sama_0835	0.31	+0.2
1,018,703	-		Sama_0835	0.31	+0.2
1,018,710	-		Sama_0835	0.31	+0.3
1,018,731	+		Sama_0835	0.32	-1.4
1,018,835	+		Sama_0835	0.38	+1.2
1,018,836	-		Sama_0835	0.38	+0.3
1,018,859	-		Sama_0835	0.39	-0.9
1,018,859	-		Sama_0835	0.39	-0.2
1,018,896	-		Sama_0835	0.41	+0.2
1,018,896	-		Sama_0835	0.41	-1.7
1,018,977	-		Sama_0835	0.46	-0.5
1,018,977	-		Sama_0835	0.46	-2.7
1,018,977	-		Sama_0835	0.46	-0.0
1,019,016	+		Sama_0835	0.48	-2.1
1,019,016	+		Sama_0835	0.48	-1.0
1,019,016	+		Sama_0835	0.48	+1.4
1,019,016	+		Sama_0835	0.48	-1.9
1,019,024	+		Sama_0835	0.48	+0.7
1,019,024	+		Sama_0835	0.48	-0.6
1,019,024	+		Sama_0835	0.48	-0.3
1,019,025	-		Sama_0835	0.48	+0.4
1,019,029	-		Sama_0835	0.49	+0.7
1,019,033	+		Sama_0835	0.49	-1.0
1,019,033	+		Sama_0835	0.49	+0.4
1,019,033	+		Sama_0835	0.49	-0.9
1,019,033	+		Sama_0835	0.49	+0.8
1,019,033	+		Sama_0835	0.49	-0.0
1,019,156	+		Sama_0835	0.55	-0.9
1,019,156	+		Sama_0835	0.55	+0.2
1,019,246	+		Sama_0835	0.60	-0.9
1,019,246	+		Sama_0835	0.60	-0.4
1,019,258	+		Sama_0835	0.61	+0.6
1,019,258	+		Sama_0835	0.61	-0.1
1,019,267	-		Sama_0835	0.62	+0.3
1,019,526	-		Sama_0835	0.76	-0.5
1,019,535	-		Sama_0835	0.76	+0.3
1,019,540	+		Sama_0835	0.76	-0.3
1,019,540	+		Sama_0835	0.76	+0.4
1,019,540	+		Sama_0835	0.76	-0.8
1,019,540	+		Sama_0835	0.76	-2.6
1,019,541	-		Sama_0835	0.76	+0.7
1,019,541	-		Sama_0835	0.76	-0.5
1,019,541	-		Sama_0835	0.76	-0.9
1,019,541	-		Sama_0835	0.76	+1.0
1,019,541	-		Sama_0835	0.76	-0.1
1,019,545	-		Sama_0835	0.77	-1.2
1,019,559	+		Sama_0835	0.77	+0.7
1,019,559	+		Sama_0835	0.77	-0.2
1,019,559	+		Sama_0835	0.77	-1.3
1,019,560	-		Sama_0835	0.77	-0.5
1,019,560	-		Sama_0835	0.77	+1.0
1,019,560	-		Sama_0835	0.77	-0.2
1,019,560	-		Sama_0835	0.77	-1.5
1,019,721	+		Sama_0835	0.86	+0.3
1,019,721	+		Sama_0835	0.86	+0.0
1,019,721	+		Sama_0835	0.86	+1.4
1,019,831	+				+0.6
1,019,891	+				-0.5
1,019,928	+				+0.8
1,019,928	+				-1.9
1,019,928	+				-0.1
1,019,971	-				+0.4
1,019,971	-				+0.1
1,019,971	-				+0.3
1,019,971	-				-0.2
1,019,980	+				-1.5
1,019,980	+				-0.2
1,019,980	+				-0.0
1,019,981	-				+1.0
1,020,007	+				+0.1
1,020,008	-				+1.0
1,020,008	-				+0.4
1,020,008	-				+0.9
1,020,056	+				-1.2
1,020,056	+				-0.3
1,020,057	-				-1.1
1,020,145	+		Sama_0836	0.15	+0.4
1,020,146	-		Sama_0836	0.15	-1.2
1,020,192	+		Sama_0836	0.19	+0.5
1,020,241	+		Sama_0836	0.24	-0.4
1,020,241	+		Sama_0836	0.24	-0.2
1,020,241	+		Sama_0836	0.24	-0.0
1,020,241	+		Sama_0836	0.24	+0.4
1,020,242	-		Sama_0836	0.24	+0.6
1,020,242	-		Sama_0836	0.24	-0.3
1,020,304	-		Sama_0836	0.30	-0.8
1,020,396	+		Sama_0836	0.38	-0.0
1,020,467	+		Sama_0836	0.44	-0.4
1,020,467	+		Sama_0836	0.44	-0.2
1,020,468	-		Sama_0836	0.44	-0.3
1,020,468	-		Sama_0836	0.44	-1.3
1,020,736	+		Sama_0836	0.68	-1.4
1,020,736	+		Sama_0836	0.68	-0.6
1,020,736	+		Sama_0836	0.68	-1.1
1,020,736	+		Sama_0836	0.68	-0.2
1,020,737	-		Sama_0836	0.68	+1.4
1,020,741	+		Sama_0836	0.69	+0.6
1,020,741	+		Sama_0836	0.69	-0.7
1,020,741	+		Sama_0836	0.69	-0.6
1,020,742	-		Sama_0836	0.69	+1.2
1,020,742	-		Sama_0836	0.69	+0.2
1,020,796	+		Sama_0836	0.74	+1.2
1,020,843	+		Sama_0836	0.78	-0.5
1,020,870	-		Sama_0836	0.80	-0.6
1,020,870	-		Sama_0836	0.80	+0.5
1,020,916	+		Sama_0836	0.85	+0.4
1,020,917	-		Sama_0836	0.85	-2.3
1,020,917	-		Sama_0836	0.85	-1.4
1,020,917	-		Sama_0836	0.85	-0.9
1,020,917	-		Sama_0836	0.85	+0.8
1,020,932	+		Sama_0836	0.86	+0.7
1,020,932	+		Sama_0836	0.86	-0.3
1,020,933	-		Sama_0836	0.86	+0.4
1,020,933	-		Sama_0836	0.86	-0.0
1,020,933	-		Sama_0836	0.86	-0.3
1,020,933	-		Sama_0836	0.86	-0.2
1,020,933	-		Sama_0836	0.86	+0.8