Experiment: nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0644 and Sama_0645 are separated by 150 nucleotides Sama_0645 and Sama_0646 are separated by 44 nucleotides Sama_0646 and Sama_0647 overlap by 8 nucleotides
Sama_0644: Sama_0644 - magnesium transporter, putative (RefSeq), at 799,759 to 800,724
_0644
Sama_0645: Sama_0645 - hypothetical protein (RefSeq), at 800,875 to 801,249
_0645
Sama_0646: Sama_0646 - response regulator receiver protein (RefSeq), at 801,294 to 801,923
_0646
Sama_0647: Sama_0647 - nitrate/nitrite sensor protein NarQ (RefSeq), at 801,916 to 803,628
_0647
Position (kb) 800
801
802 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 799.916 kb on - strand, within Sama_0644 at 799.916 kb on - strand, within Sama_0644 at 799.916 kb on - strand, within Sama_0644 at 799.940 kb on + strand, within Sama_0644 at 799.953 kb on + strand, within Sama_0644 at 799.953 kb on + strand, within Sama_0644 at 800.085 kb on + strand, within Sama_0644 at 800.085 kb on + strand, within Sama_0644 at 800.086 kb on - strand, within Sama_0644 at 800.118 kb on + strand, within Sama_0644 at 800.119 kb on - strand, within Sama_0644 at 800.144 kb on + strand, within Sama_0644 at 800.144 kb on + strand, within Sama_0644 at 800.262 kb on + strand, within Sama_0644 at 800.263 kb on - strand, within Sama_0644 at 800.284 kb on + strand, within Sama_0644 at 800.284 kb on + strand, within Sama_0644 at 800.284 kb on + strand, within Sama_0644 at 800.285 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.345 kb on - strand, within Sama_0644 at 800.357 kb on - strand, within Sama_0644 at 800.410 kb on - strand, within Sama_0644 at 800.424 kb on + strand, within Sama_0644 at 800.424 kb on + strand, within Sama_0644 at 800.424 kb on + strand, within Sama_0644 at 800.467 kb on + strand, within Sama_0644 at 800.468 kb on - strand, within Sama_0644 at 800.468 kb on - strand, within Sama_0644 at 800.468 kb on - strand, within Sama_0644 at 800.603 kb on + strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.622 kb on + strand, within Sama_0644 at 800.622 kb on + strand, within Sama_0644 at 800.623 kb on - strand, within Sama_0644 at 800.623 kb on - strand, within Sama_0644 at 800.699 kb on + strand at 800.699 kb on + strand at 800.699 kb on + strand at 800.699 kb on + strand at 800.700 kb on - strand at 800.700 kb on - strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.757 kb on + strand at 800.757 kb on + strand at 800.757 kb on + strand at 800.758 kb on - strand at 800.785 kb on - strand at 800.785 kb on - strand at 800.821 kb on + strand at 800.821 kb on + strand at 800.822 kb on - strand at 800.822 kb on - strand at 800.822 kb on - strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.869 kb on + strand at 800.869 kb on + strand at 800.869 kb on + strand at 800.874 kb on + strand at 800.874 kb on + strand at 800.875 kb on - strand at 800.881 kb on + strand at 800.882 kb on - strand at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.003 kb on - strand, within Sama_0645 at 801.003 kb on - strand, within Sama_0645 at 801.005 kb on + strand, within Sama_0645 at 801.012 kb on + strand, within Sama_0645 at 801.103 kb on + strand, within Sama_0645 at 801.103 kb on + strand, within Sama_0645 at 801.103 kb on + strand, within Sama_0645 at 801.103 kb on + strand, within Sama_0645 at 801.104 kb on - strand, within Sama_0645 at 801.104 kb on - strand, within Sama_0645 at 801.121 kb on + strand, within Sama_0645 at 801.161 kb on - strand, within Sama_0645 at 801.200 kb on + strand, within Sama_0645 at 801.201 kb on - strand, within Sama_0645 at 801.233 kb on + strand at 801.295 kb on + strand at 801.295 kb on + strand at 801.307 kb on + strand at 801.308 kb on - strand at 801.369 kb on + strand, within Sama_0646 at 801.369 kb on + strand, within Sama_0646 at 801.477 kb on + strand, within Sama_0646 at 801.477 kb on + strand, within Sama_0646 at 801.478 kb on - strand, within Sama_0646 at 801.478 kb on - strand, within Sama_0646 at 801.478 kb on - strand, within Sama_0646 at 801.478 kb on - strand, within Sama_0646 at 801.520 kb on + strand, within Sama_0646 at 801.521 kb on - strand, within Sama_0646 at 801.521 kb on - strand, within Sama_0646 at 801.521 kb on - strand, within Sama_0646 at 801.614 kb on - strand, within Sama_0646 at 801.645 kb on + strand, within Sama_0646 at 801.645 kb on + strand, within Sama_0646 at 801.645 kb on + strand, within Sama_0646 at 801.645 kb on + strand, within Sama_0646 at 801.646 kb on - strand, within Sama_0646 at 801.646 kb on - strand, within Sama_0646 at 801.656 kb on + strand, within Sama_0646 at 801.656 kb on + strand, within Sama_0646 at 801.656 kb on + strand, within Sama_0646 at 801.657 kb on - strand, within Sama_0646 at 801.762 kb on + strand, within Sama_0646 at 801.762 kb on + strand, within Sama_0646 at 801.762 kb on + strand, within Sama_0646 at 801.762 kb on + strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.765 kb on - strand, within Sama_0646 at 801.765 kb on - strand, within Sama_0646 at 801.765 kb on - strand, within Sama_0646 at 801.765 kb on - strand, within Sama_0646 at 801.895 kb on - strand at 801.910 kb on + strand at 801.911 kb on - strand at 801.917 kb on + strand at 801.917 kb on + strand at 801.918 kb on - strand at 801.969 kb on + strand at 801.970 kb on - strand at 801.970 kb on - strand at 802.075 kb on + strand at 802.075 kb on + strand at 802.075 kb on + strand at 802.075 kb on + strand at 802.076 kb on - strand at 802.076 kb on - strand at 802.076 kb on - strand at 802.076 kb on - strand at 802.076 kb on - strand at 802.076 kb on - strand at 802.077 kb on + strand at 802.078 kb on - strand at 802.104 kb on + strand, within Sama_0647 at 802.104 kb on + strand, within Sama_0647 at 802.105 kb on - strand, within Sama_0647 at 802.113 kb on + strand, within Sama_0647 at 802.113 kb on + strand, within Sama_0647 at 802.113 kb on + strand, within Sama_0647 at 802.113 kb on + strand, within Sama_0647 at 802.114 kb on - strand, within Sama_0647 at 802.114 kb on - strand, within Sama_0647 at 802.114 kb on - strand, within Sama_0647 at 802.114 kb on - strand, within Sama_0647 at 802.114 kb on - strand, within Sama_0647 at 802.114 kb on - strand, within Sama_0647 at 802.123 kb on - strand, within Sama_0647 at 802.128 kb on + strand, within Sama_0647 at 802.128 kb on + strand, within Sama_0647 at 802.169 kb on - strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.196 kb on - strand, within Sama_0647 at 802.204 kb on + strand, within Sama_0647
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 5 mM remove 799,916 - Sama_0644 0.16 +0.0 799,916 - Sama_0644 0.16 -0.5 799,916 - Sama_0644 0.16 -0.1 799,940 + Sama_0644 0.19 +2.0 799,953 + Sama_0644 0.20 -1.1 799,953 + Sama_0644 0.20 -0.3 800,085 + Sama_0644 0.34 +0.1 800,085 + Sama_0644 0.34 +0.7 800,086 - Sama_0644 0.34 -0.5 800,118 + Sama_0644 0.37 -2.0 800,119 - Sama_0644 0.37 -0.1 800,144 + Sama_0644 0.40 -1.7 800,144 + Sama_0644 0.40 +0.3 800,262 + Sama_0644 0.52 -0.8 800,263 - Sama_0644 0.52 +0.0 800,284 + Sama_0644 0.54 -0.9 800,284 + Sama_0644 0.54 -0.0 800,284 + Sama_0644 0.54 -0.6 800,285 - Sama_0644 0.54 -0.1 800,308 - Sama_0644 0.57 +0.4 800,308 - Sama_0644 0.57 -0.5 800,308 - Sama_0644 0.57 -0.3 800,308 - Sama_0644 0.57 -0.1 800,344 + Sama_0644 0.61 +0.4 800,344 + Sama_0644 0.61 -0.1 800,344 + Sama_0644 0.61 -0.5 800,344 + Sama_0644 0.61 -0.9 800,344 + Sama_0644 0.61 +0.0 800,345 - Sama_0644 0.61 +0.7 800,357 - Sama_0644 0.62 +0.3 800,410 - Sama_0644 0.67 +0.1 800,424 + Sama_0644 0.69 -0.4 800,424 + Sama_0644 0.69 +0.0 800,424 + Sama_0644 0.69 -0.4 800,467 + Sama_0644 0.73 +0.1 800,468 - Sama_0644 0.73 -0.4 800,468 - Sama_0644 0.73 -0.1 800,468 - Sama_0644 0.73 +1.0 800,603 + Sama_0644 0.87 +0.4 800,604 - Sama_0644 0.87 -0.0 800,604 - Sama_0644 0.87 -0.0 800,604 - Sama_0644 0.87 +0.5 800,604 - Sama_0644 0.87 +0.3 800,604 - Sama_0644 0.87 +0.4 800,604 - Sama_0644 0.87 -0.7 800,604 - Sama_0644 0.87 -0.5 800,622 + Sama_0644 0.89 +0.5 800,622 + Sama_0644 0.89 -0.3 800,623 - Sama_0644 0.89 -0.2 800,623 - Sama_0644 0.89 -0.9 800,699 + -0.2 800,699 + +0.2 800,699 + -0.1 800,699 + -0.1 800,700 - +0.7 800,700 - +0.2 800,705 + +0.5 800,705 + +1.4 800,705 + -0.3 800,705 + +0.6 800,705 + -0.5 800,705 + +0.2 800,705 + -0.0 800,705 + -1.0 800,705 + -0.2 800,705 + +0.5 800,705 + +0.7 800,705 + -1.0 800,705 + +0.3 800,706 - -0.1 800,706 - -0.8 800,706 - -0.5 800,706 - -0.6 800,706 - -0.4 800,706 - +0.1 800,706 - +0.5 800,757 + -0.1 800,757 + -0.0 800,757 + +0.5 800,758 - -2.3 800,785 - +0.7 800,785 - -0.8 800,821 + +1.1 800,821 + -0.7 800,822 - +1.5 800,822 - +0.1 800,822 - +0.1 800,823 + +0.2 800,823 + +0.4 800,823 + -0.7 800,823 + -1.0 800,823 + +0.1 800,823 + -0.2 800,823 + -1.7 800,823 + -1.2 800,824 - -0.3 800,824 - +1.2 800,824 - -0.5 800,824 - +0.8 800,824 - -0.3 800,824 - +0.9 800,824 - -0.1 800,869 + -0.7 800,869 + -0.3 800,869 + +0.3 800,874 + +0.9 800,874 + +0.1 800,875 - -1.5 800,881 + -0.7 800,882 - -1.2 801,002 + Sama_0645 0.34 +0.0 801,002 + Sama_0645 0.34 +0.0 801,002 + Sama_0645 0.34 -0.5 801,002 + Sama_0645 0.34 -1.9 801,002 + Sama_0645 0.34 +0.5 801,002 + Sama_0645 0.34 -0.1 801,003 - Sama_0645 0.34 -0.5 801,003 - Sama_0645 0.34 -2.4 801,005 + Sama_0645 0.35 +2.0 801,012 + Sama_0645 0.37 +1.9 801,103 + Sama_0645 0.61 +0.0 801,103 + Sama_0645 0.61 +1.7 801,103 + Sama_0645 0.61 +0.8 801,103 + Sama_0645 0.61 -0.1 801,104 - Sama_0645 0.61 +1.0 801,104 - Sama_0645 0.61 +0.3 801,121 + Sama_0645 0.66 +0.5 801,161 - Sama_0645 0.76 +2.8 801,200 + Sama_0645 0.87 -1.6 801,201 - Sama_0645 0.87 +0.9 801,233 + -0.1 801,295 + +0.6 801,295 + +0.2 801,307 + +0.1 801,308 - -0.1 801,369 + Sama_0646 0.12 -0.1 801,369 + Sama_0646 0.12 +0.2 801,477 + Sama_0646 0.29 +0.7 801,477 + Sama_0646 0.29 -0.1 801,478 - Sama_0646 0.29 -0.1 801,478 - Sama_0646 0.29 +0.3 801,478 - Sama_0646 0.29 -0.8 801,478 - Sama_0646 0.29 +1.2 801,520 + Sama_0646 0.36 -0.0 801,521 - Sama_0646 0.36 +0.1 801,521 - Sama_0646 0.36 +0.3 801,521 - Sama_0646 0.36 -0.5 801,614 - Sama_0646 0.51 +0.2 801,645 + Sama_0646 0.56 -0.7 801,645 + Sama_0646 0.56 +0.4 801,645 + Sama_0646 0.56 -0.3 801,645 + Sama_0646 0.56 +1.3 801,646 - Sama_0646 0.56 +1.0 801,646 - Sama_0646 0.56 -0.8 801,656 + Sama_0646 0.57 -0.1 801,656 + Sama_0646 0.57 -0.5 801,656 + Sama_0646 0.57 +0.7 801,657 - Sama_0646 0.58 +0.9 801,762 + Sama_0646 0.74 -0.1 801,762 + Sama_0646 0.74 +0.6 801,762 + Sama_0646 0.74 +0.1 801,762 + Sama_0646 0.74 +0.0 801,763 - Sama_0646 0.74 +0.1 801,763 - Sama_0646 0.74 +1.9 801,763 - Sama_0646 0.74 +1.7 801,763 - Sama_0646 0.74 +1.0 801,763 - Sama_0646 0.74 +0.1 801,763 - Sama_0646 0.74 +0.5 801,763 - Sama_0646 0.74 +0.3 801,763 - Sama_0646 0.74 -1.2 801,763 - Sama_0646 0.74 +0.6 801,763 - Sama_0646 0.74 +0.9 801,763 - Sama_0646 0.74 +0.7 801,764 + Sama_0646 0.75 -0.7 801,764 + Sama_0646 0.75 +1.2 801,764 + Sama_0646 0.75 +1.3 801,764 + Sama_0646 0.75 +0.7 801,764 + Sama_0646 0.75 +0.5 801,764 + Sama_0646 0.75 +0.7 801,764 + Sama_0646 0.75 -1.7 801,765 - Sama_0646 0.75 -0.8 801,765 - Sama_0646 0.75 +1.0 801,765 - Sama_0646 0.75 +0.7 801,765 - Sama_0646 0.75 +1.5 801,895 - +1.5 801,910 + +0.4 801,911 - -0.3 801,917 + +1.7 801,917 + +0.3 801,918 - +0.8 801,969 + +1.9 801,970 - +0.5 801,970 - +0.3 802,075 + +0.4 802,075 + +1.9 802,075 + +1.1 802,075 + +0.0 802,076 - +0.4 802,076 - +0.3 802,076 - -0.1 802,076 - +0.4 802,076 - +0.7 802,076 - +0.1 802,077 + +0.2 802,078 - +1.5 802,104 + Sama_0647 0.11 -0.3 802,104 + Sama_0647 0.11 +0.9 802,105 - Sama_0647 0.11 +0.6 802,113 + Sama_0647 0.12 -1.3 802,113 + Sama_0647 0.12 -0.5 802,113 + Sama_0647 0.12 +0.8 802,113 + Sama_0647 0.12 -0.6 802,114 - Sama_0647 0.12 -0.1 802,114 - Sama_0647 0.12 +1.1 802,114 - Sama_0647 0.12 -0.4 802,114 - Sama_0647 0.12 +0.5 802,114 - Sama_0647 0.12 +0.6 802,114 - Sama_0647 0.12 +0.1 802,123 - Sama_0647 0.12 +0.1 802,128 + Sama_0647 0.12 -0.7 802,128 + Sama_0647 0.12 -0.3 802,169 - Sama_0647 0.15 +0.2 802,177 + Sama_0647 0.15 +1.7 802,177 + Sama_0647 0.15 +0.1 802,177 + Sama_0647 0.15 +1.0 802,177 + Sama_0647 0.15 -0.3 802,177 + Sama_0647 0.15 -1.3 802,177 + Sama_0647 0.15 +0.5 802,177 + Sama_0647 0.15 -0.1 802,178 - Sama_0647 0.15 +0.3 802,178 - Sama_0647 0.15 +0.1 802,178 - Sama_0647 0.15 +0.1 802,178 - Sama_0647 0.15 +0.5 802,178 - Sama_0647 0.15 +0.2 802,178 - Sama_0647 0.15 -0.3 802,178 - Sama_0647 0.15 -0.1 802,178 - Sama_0647 0.15 +0.3 802,196 - Sama_0647 0.16 +1.1 802,204 + Sama_0647 0.17 -0.3
Or see this region's nucleotide sequence