Experiment: nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0592 and Sama_0593 overlap by 1 nucleotides Sama_0593 and Sama_0594 overlap by 4 nucleotides Sama_0594 and Sama_0595 are separated by 406 nucleotides
Sama_0592: Sama_0592 - smc-like chromosome partitioning protein (DUF3584) <small>(from data)</small>, at 739,679 to 743,359
_0592
Sama_0593: Sama_0593 - predicted chromosome partitioning protein (with smc-like Sama_0592) <small>(from data)</small>, at 743,359 to 744,024
_0593
Sama_0594: Sama_0594 - predicted chromosome partitioning protein (with smc-like Sama_0592) <small>(from data)</small>, at 744,021 to 745,241
_0594
Sama_0595: Sama_0595 - sodium:dicarboxylate symporter (RefSeq), at 745,648 to 746,892
_0595
Position (kb) 744
745
746 Strain fitness (log2 ratio) -2
-1
0
1
2 at 743.042 kb on - strand at 743.048 kb on + strand at 743.049 kb on - strand at 743.049 kb on - strand at 743.063 kb on - strand at 743.081 kb on - strand at 743.194 kb on + strand at 743.194 kb on + strand at 743.194 kb on + strand at 743.194 kb on + strand at 743.194 kb on + strand at 743.194 kb on + strand at 743.194 kb on + strand at 743.195 kb on - strand at 743.195 kb on - strand at 743.195 kb on - strand at 743.195 kb on - strand at 743.259 kb on - strand at 743.260 kb on + strand at 743.260 kb on + strand at 743.260 kb on + strand at 743.260 kb on + strand at 743.260 kb on + strand at 743.260 kb on + strand at 743.260 kb on + strand at 743.261 kb on - strand at 743.261 kb on - strand at 743.261 kb on - strand at 743.261 kb on - strand at 743.261 kb on - strand at 743.339 kb on - strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.357 kb on + strand at 743.443 kb on - strand, within Sama_0593 at 743.505 kb on + strand, within Sama_0593 at 743.515 kb on + strand, within Sama_0593 at 743.578 kb on + strand, within Sama_0593 at 743.631 kb on + strand, within Sama_0593 at 743.631 kb on + strand, within Sama_0593 at 743.632 kb on - strand, within Sama_0593 at 743.823 kb on + strand, within Sama_0593 at 743.823 kb on + strand, within Sama_0593 at 743.823 kb on + strand, within Sama_0593 at 743.823 kb on + strand, within Sama_0593 at 743.841 kb on + strand, within Sama_0593 at 743.841 kb on + strand, within Sama_0593 at 743.841 kb on + strand, within Sama_0593 at 743.841 kb on + strand, within Sama_0593 at 743.842 kb on - strand, within Sama_0593 at 743.842 kb on - strand, within Sama_0593 at 743.881 kb on - strand, within Sama_0593 at 743.909 kb on - strand, within Sama_0593 at 743.932 kb on + strand, within Sama_0593 at 743.932 kb on + strand, within Sama_0593 at 743.932 kb on + strand, within Sama_0593 at 743.932 kb on + strand, within Sama_0593 at 743.932 kb on + strand, within Sama_0593 at 743.933 kb on - strand, within Sama_0593 at 744.020 kb on + strand at 744.020 kb on + strand at 744.021 kb on - strand at 744.099 kb on + strand at 744.099 kb on + strand at 744.099 kb on + strand at 744.100 kb on - strand at 744.100 kb on - strand at 744.199 kb on + strand, within Sama_0594 at 744.242 kb on + strand, within Sama_0594 at 744.243 kb on - strand, within Sama_0594 at 744.266 kb on + strand, within Sama_0594 at 744.277 kb on + strand, within Sama_0594 at 744.277 kb on + strand, within Sama_0594 at 744.277 kb on + strand, within Sama_0594 at 744.277 kb on + strand, within Sama_0594 at 744.277 kb on + strand, within Sama_0594 at 744.278 kb on - strand, within Sama_0594 at 744.278 kb on - strand, within Sama_0594 at 744.318 kb on + strand, within Sama_0594 at 744.318 kb on + strand, within Sama_0594 at 744.318 kb on + strand, within Sama_0594 at 744.318 kb on + strand, within Sama_0594 at 744.319 kb on - strand, within Sama_0594 at 744.319 kb on - strand, within Sama_0594 at 744.319 kb on - strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.320 kb on + strand, within Sama_0594 at 744.321 kb on - strand, within Sama_0594 at 744.321 kb on - strand, within Sama_0594 at 744.321 kb on - strand, within Sama_0594 at 744.345 kb on + strand, within Sama_0594 at 744.345 kb on + strand, within Sama_0594 at 744.345 kb on + strand, within Sama_0594 at 744.346 kb on - strand, within Sama_0594 at 744.363 kb on + strand, within Sama_0594 at 744.364 kb on - strand, within Sama_0594 at 744.390 kb on + strand, within Sama_0594 at 744.391 kb on - strand, within Sama_0594 at 744.391 kb on - strand, within Sama_0594 at 744.391 kb on - strand, within Sama_0594 at 744.391 kb on - strand, within Sama_0594 at 744.443 kb on + strand, within Sama_0594 at 744.460 kb on - strand, within Sama_0594 at 744.578 kb on + strand, within Sama_0594 at 744.604 kb on + strand, within Sama_0594 at 744.605 kb on - strand, within Sama_0594 at 744.635 kb on + strand, within Sama_0594 at 744.635 kb on + strand, within Sama_0594 at 744.636 kb on - strand, within Sama_0594 at 744.636 kb on - strand, within Sama_0594 at 744.636 kb on - strand, within Sama_0594 at 744.636 kb on - strand, within Sama_0594 at 744.636 kb on - strand, within Sama_0594 at 744.636 kb on - strand, within Sama_0594 at 744.707 kb on + strand, within Sama_0594 at 744.735 kb on + strand, within Sama_0594 at 744.736 kb on - strand, within Sama_0594 at 744.743 kb on + strand, within Sama_0594 at 744.743 kb on + strand, within Sama_0594 at 744.743 kb on + strand, within Sama_0594 at 744.743 kb on + strand, within Sama_0594 at 744.744 kb on - strand, within Sama_0594 at 744.744 kb on - strand, within Sama_0594 at 744.744 kb on - strand, within Sama_0594 at 744.744 kb on - strand, within Sama_0594 at 744.744 kb on - strand, within Sama_0594 at 744.744 kb on - strand, within Sama_0594 at 744.756 kb on + strand, within Sama_0594 at 744.756 kb on + strand, within Sama_0594 at 744.757 kb on - strand, within Sama_0594 at 744.803 kb on + strand, within Sama_0594 at 744.849 kb on - strand, within Sama_0594 at 744.916 kb on + strand, within Sama_0594 at 744.916 kb on + strand, within Sama_0594 at 744.916 kb on + strand, within Sama_0594 at 744.916 kb on + strand, within Sama_0594 at 744.917 kb on - strand, within Sama_0594 at 744.917 kb on - strand, within Sama_0594 at 744.978 kb on - strand, within Sama_0594 at 745.014 kb on + strand, within Sama_0594 at 745.014 kb on + strand, within Sama_0594 at 745.015 kb on - strand, within Sama_0594 at 745.015 kb on - strand, within Sama_0594 at 745.015 kb on - strand, within Sama_0594 at 745.030 kb on + strand, within Sama_0594 at 745.030 kb on + strand, within Sama_0594 at 745.030 kb on + strand, within Sama_0594 at 745.030 kb on + strand, within Sama_0594 at 745.031 kb on - strand, within Sama_0594 at 745.031 kb on - strand, within Sama_0594 at 745.031 kb on - strand, within Sama_0594 at 745.031 kb on - strand, within Sama_0594 at 745.031 kb on - strand, within Sama_0594 at 745.062 kb on + strand, within Sama_0594 at 745.063 kb on - strand, within Sama_0594 at 745.063 kb on - strand, within Sama_0594 at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.194 kb on + strand at 745.194 kb on + strand at 745.194 kb on + strand at 745.194 kb on + strand at 745.194 kb on + strand at 745.194 kb on + strand at 745.194 kb on + strand at 745.195 kb on - strand at 745.196 kb on + strand at 745.196 kb on + strand at 745.281 kb on + strand at 745.290 kb on + strand at 745.290 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.334 kb on + strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.335 kb on - strand at 745.338 kb on + strand at 745.492 kb on + strand at 745.626 kb on + strand at 745.627 kb on - strand at 745.627 kb on - strand at 745.647 kb on + strand at 745.647 kb on + strand at 745.647 kb on + strand at 745.647 kb on + strand at 745.647 kb on + strand at 745.647 kb on + strand at 745.647 kb on + strand at 745.648 kb on - strand at 745.648 kb on - strand at 745.648 kb on - strand at 745.648 kb on - strand at 745.648 kb on - strand at 745.689 kb on + strand at 745.720 kb on + strand at 745.720 kb on + strand at 745.720 kb on + strand at 745.720 kb on + strand at 745.720 kb on + strand at 745.720 kb on + strand at 745.734 kb on + strand at 745.734 kb on + strand at 745.860 kb on + strand, within Sama_0595 at 745.909 kb on + strand, within Sama_0595 at 745.909 kb on + strand, within Sama_0595 at 745.910 kb on - strand, within Sama_0595 at 745.920 kb on + strand, within Sama_0595 at 745.920 kb on + strand, within Sama_0595 at 745.921 kb on - strand, within Sama_0595 at 745.932 kb on + strand, within Sama_0595 at 745.932 kb on + strand, within Sama_0595 at 745.932 kb on + strand, within Sama_0595 at 745.932 kb on + strand, within Sama_0595 at 745.932 kb on + strand, within Sama_0595 at 745.933 kb on - strand, within Sama_0595 at 745.933 kb on - strand, within Sama_0595 at 745.934 kb on + strand, within Sama_0595 at 745.935 kb on - strand, within Sama_0595 at 746.013 kb on + strand, within Sama_0595 at 746.051 kb on + strand, within Sama_0595 at 746.052 kb on - strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.057 kb on + strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.058 kb on - strand, within Sama_0595 at 746.085 kb on + strand, within Sama_0595 at 746.085 kb on + strand, within Sama_0595 at 746.085 kb on + strand, within Sama_0595 at 746.085 kb on + strand, within Sama_0595 at 746.086 kb on - strand, within Sama_0595 at 746.086 kb on - strand, within Sama_0595 at 746.086 kb on - strand, within Sama_0595 at 746.097 kb on + strand, within Sama_0595 at 746.097 kb on + strand, within Sama_0595 at 746.097 kb on + strand, within Sama_0595 at 746.098 kb on - strand, within Sama_0595 at 746.115 kb on + strand, within Sama_0595 at 746.116 kb on - strand, within Sama_0595 at 746.175 kb on - strand, within Sama_0595 at 746.175 kb on - strand, within Sama_0595 at 746.196 kb on + strand, within Sama_0595
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 5 mM remove 743,042 - +0.2 743,048 + -1.8 743,049 - +1.3 743,049 - -0.0 743,063 - -1.0 743,081 - -0.1 743,194 + -0.2 743,194 + -0.7 743,194 + +0.1 743,194 + -1.1 743,194 + +1.1 743,194 + +0.8 743,194 + +0.8 743,195 - -1.4 743,195 - -0.4 743,195 - +0.2 743,195 - +0.6 743,259 - -1.2 743,260 + +1.0 743,260 + -0.1 743,260 + +1.2 743,260 + +0.1 743,260 + -1.2 743,260 + +0.6 743,260 + -0.6 743,261 - +0.2 743,261 - +0.2 743,261 - +0.9 743,261 - -0.0 743,261 - -0.0 743,339 - +0.5 743,357 + -0.7 743,357 + -0.1 743,357 + -1.0 743,357 + +0.7 743,357 + +0.2 743,443 - Sama_0593 0.13 +0.2 743,505 + Sama_0593 0.22 +1.6 743,515 + Sama_0593 0.23 -2.1 743,578 + Sama_0593 0.33 -0.7 743,631 + Sama_0593 0.41 -0.9 743,631 + Sama_0593 0.41 -1.0 743,632 - Sama_0593 0.41 +0.2 743,823 + Sama_0593 0.70 +0.5 743,823 + Sama_0593 0.70 -0.5 743,823 + Sama_0593 0.70 +1.3 743,823 + Sama_0593 0.70 -0.2 743,841 + Sama_0593 0.72 +0.9 743,841 + Sama_0593 0.72 +0.6 743,841 + Sama_0593 0.72 +0.5 743,841 + Sama_0593 0.72 +0.2 743,842 - Sama_0593 0.73 -0.5 743,842 - Sama_0593 0.73 -0.8 743,881 - Sama_0593 0.78 -0.5 743,909 - Sama_0593 0.83 +1.0 743,932 + Sama_0593 0.86 -0.2 743,932 + Sama_0593 0.86 -0.7 743,932 + Sama_0593 0.86 -1.1 743,932 + Sama_0593 0.86 -0.1 743,932 + Sama_0593 0.86 -0.0 743,933 - Sama_0593 0.86 -1.2 744,020 + -0.4 744,020 + +1.0 744,021 - +2.0 744,099 + -0.5 744,099 + -1.0 744,099 + -0.2 744,100 - +1.5 744,100 - -0.7 744,199 + Sama_0594 0.15 +0.0 744,242 + Sama_0594 0.18 -0.2 744,243 - Sama_0594 0.18 +0.3 744,266 + Sama_0594 0.20 -0.6 744,277 + Sama_0594 0.21 -1.1 744,277 + Sama_0594 0.21 +0.5 744,277 + Sama_0594 0.21 +0.0 744,277 + Sama_0594 0.21 -0.7 744,277 + Sama_0594 0.21 +0.6 744,278 - Sama_0594 0.21 -0.7 744,278 - Sama_0594 0.21 +1.3 744,318 + Sama_0594 0.24 +0.2 744,318 + Sama_0594 0.24 +0.4 744,318 + Sama_0594 0.24 +0.8 744,318 + Sama_0594 0.24 -0.5 744,319 - Sama_0594 0.24 -0.1 744,319 - Sama_0594 0.24 -0.2 744,319 - Sama_0594 0.24 +0.8 744,320 + Sama_0594 0.24 -0.8 744,320 + Sama_0594 0.24 +0.3 744,320 + Sama_0594 0.24 +1.2 744,320 + Sama_0594 0.24 -2.0 744,320 + Sama_0594 0.24 -0.4 744,320 + Sama_0594 0.24 +0.6 744,320 + Sama_0594 0.24 +1.7 744,320 + Sama_0594 0.24 -0.8 744,321 - Sama_0594 0.25 +0.7 744,321 - Sama_0594 0.25 -0.3 744,321 - Sama_0594 0.25 -0.8 744,345 + Sama_0594 0.27 -1.1 744,345 + Sama_0594 0.27 -0.6 744,345 + Sama_0594 0.27 -0.0 744,346 - Sama_0594 0.27 -0.7 744,363 + Sama_0594 0.28 +0.1 744,364 - Sama_0594 0.28 -0.8 744,390 + Sama_0594 0.30 +0.8 744,391 - Sama_0594 0.30 -0.8 744,391 - Sama_0594 0.30 -0.4 744,391 - Sama_0594 0.30 +0.5 744,391 - Sama_0594 0.30 -0.1 744,443 + Sama_0594 0.35 +0.0 744,460 - Sama_0594 0.36 -0.8 744,578 + Sama_0594 0.46 +0.2 744,604 + Sama_0594 0.48 +1.1 744,605 - Sama_0594 0.48 -2.2 744,635 + Sama_0594 0.50 +0.5 744,635 + Sama_0594 0.50 -0.2 744,636 - Sama_0594 0.50 -2.2 744,636 - Sama_0594 0.50 +0.8 744,636 - Sama_0594 0.50 -0.2 744,636 - Sama_0594 0.50 -0.1 744,636 - Sama_0594 0.50 +0.7 744,636 - Sama_0594 0.50 -0.5 744,707 + Sama_0594 0.56 +0.2 744,735 + Sama_0594 0.58 -0.0 744,736 - Sama_0594 0.59 -0.9 744,743 + Sama_0594 0.59 -1.3 744,743 + Sama_0594 0.59 -1.1 744,743 + Sama_0594 0.59 -1.0 744,743 + Sama_0594 0.59 -0.4 744,744 - Sama_0594 0.59 -0.2 744,744 - Sama_0594 0.59 -1.7 744,744 - Sama_0594 0.59 -0.1 744,744 - Sama_0594 0.59 +0.0 744,744 - Sama_0594 0.59 -1.5 744,744 - Sama_0594 0.59 -2.0 744,756 + Sama_0594 0.60 +0.0 744,756 + Sama_0594 0.60 +0.3 744,757 - Sama_0594 0.60 -1.3 744,803 + Sama_0594 0.64 +0.7 744,849 - Sama_0594 0.68 -0.1 744,916 + Sama_0594 0.73 -0.2 744,916 + Sama_0594 0.73 +0.5 744,916 + Sama_0594 0.73 +0.5 744,916 + Sama_0594 0.73 +2.1 744,917 - Sama_0594 0.73 +0.0 744,917 - Sama_0594 0.73 +0.3 744,978 - Sama_0594 0.78 -1.0 745,014 + Sama_0594 0.81 +1.5 745,014 + Sama_0594 0.81 +0.1 745,015 - Sama_0594 0.81 +0.2 745,015 - Sama_0594 0.81 +0.7 745,015 - Sama_0594 0.81 +0.5 745,030 + Sama_0594 0.83 -0.3 745,030 + Sama_0594 0.83 -0.7 745,030 + Sama_0594 0.83 -0.3 745,030 + Sama_0594 0.83 -0.3 745,031 - Sama_0594 0.83 +0.6 745,031 - Sama_0594 0.83 -0.5 745,031 - Sama_0594 0.83 -0.1 745,031 - Sama_0594 0.83 +0.6 745,031 - Sama_0594 0.83 +2.1 745,062 + Sama_0594 0.85 +1.3 745,063 - Sama_0594 0.85 +0.2 745,063 - Sama_0594 0.85 -2.4 745,148 + +1.5 745,148 + -1.1 745,148 + -0.7 745,148 + -0.5 745,194 + +0.1 745,194 + +0.2 745,194 + -0.1 745,194 + +0.0 745,194 + -0.0 745,194 + -0.3 745,194 + -0.2 745,195 - -0.2 745,196 + -1.3 745,196 + -0.0 745,281 + -0.2 745,290 + -1.7 745,290 + -0.3 745,334 + +0.5 745,334 + -0.4 745,334 + -0.1 745,334 + -1.3 745,334 + -0.3 745,334 + -1.0 745,334 + -0.9 745,334 + -1.1 745,334 + -1.3 745,335 - +0.4 745,335 - -0.1 745,335 - -0.1 745,335 - +0.6 745,335 - +0.2 745,335 - -0.2 745,335 - +1.3 745,335 - -0.3 745,335 - -0.5 745,335 - -0.8 745,335 - -1.3 745,335 - -0.6 745,338 + -0.2 745,492 + -0.9 745,626 + -0.4 745,627 - -0.2 745,627 - -1.0 745,647 + +0.1 745,647 + +0.3 745,647 + +0.1 745,647 + -1.2 745,647 + +1.1 745,647 + -0.1 745,647 + +0.0 745,648 - -0.3 745,648 - +1.0 745,648 - -0.1 745,648 - +0.7 745,648 - +0.6 745,689 + +0.5 745,720 + -0.6 745,720 + +0.4 745,720 + +0.5 745,720 + +0.8 745,720 + -0.2 745,720 + -0.2 745,734 + -0.1 745,734 + +1.5 745,860 + Sama_0595 0.17 -0.4 745,909 + Sama_0595 0.21 -0.6 745,909 + Sama_0595 0.21 +0.6 745,910 - Sama_0595 0.21 -0.1 745,920 + Sama_0595 0.22 +0.2 745,920 + Sama_0595 0.22 +0.7 745,921 - Sama_0595 0.22 +2.3 745,932 + Sama_0595 0.23 +0.5 745,932 + Sama_0595 0.23 +1.5 745,932 + Sama_0595 0.23 -0.2 745,932 + Sama_0595 0.23 +0.2 745,932 + Sama_0595 0.23 -0.2 745,933 - Sama_0595 0.23 -1.1 745,933 - Sama_0595 0.23 -1.1 745,934 + Sama_0595 0.23 +0.2 745,935 - Sama_0595 0.23 -1.0 746,013 + Sama_0595 0.29 -0.5 746,051 + Sama_0595 0.32 +0.2 746,052 - Sama_0595 0.32 +0.5 746,057 + Sama_0595 0.33 +0.5 746,057 + Sama_0595 0.33 +0.5 746,057 + Sama_0595 0.33 -0.1 746,057 + Sama_0595 0.33 -0.5 746,057 + Sama_0595 0.33 +0.2 746,057 + Sama_0595 0.33 -1.0 746,057 + Sama_0595 0.33 -0.5 746,057 + Sama_0595 0.33 -0.1 746,057 + Sama_0595 0.33 +0.2 746,057 + Sama_0595 0.33 -0.5 746,058 - Sama_0595 0.33 +0.5 746,058 - Sama_0595 0.33 -2.6 746,058 - Sama_0595 0.33 +0.5 746,058 - Sama_0595 0.33 -0.8 746,058 - Sama_0595 0.33 +1.5 746,058 - Sama_0595 0.33 +0.8 746,058 - Sama_0595 0.33 -0.5 746,058 - Sama_0595 0.33 +0.4 746,085 + Sama_0595 0.35 -2.0 746,085 + Sama_0595 0.35 +0.8 746,085 + Sama_0595 0.35 -0.1 746,085 + Sama_0595 0.35 +1.5 746,086 - Sama_0595 0.35 -0.6 746,086 - Sama_0595 0.35 -1.7 746,086 - Sama_0595 0.35 -1.1 746,097 + Sama_0595 0.36 +0.4 746,097 + Sama_0595 0.36 -0.2 746,097 + Sama_0595 0.36 +0.4 746,098 - Sama_0595 0.36 +0.1 746,115 + Sama_0595 0.38 +0.1 746,116 - Sama_0595 0.38 +0.2 746,175 - Sama_0595 0.42 +0.0 746,175 - Sama_0595 0.42 -0.7 746,196 + Sama_0595 0.44 -0.5
Or see this region's nucleotide sequence