Strain Fitness in Shewanella amazonensis SB2B around Sama_0585

Experiment: nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0584 and Sama_0585 are separated by 133 nucleotidesSama_0585 and Sama_0586 overlap by 47 nucleotides Sama_0584: Sama_0584 - elongation factor G (RefSeq), at 729,256 to 731,346 _0584 Sama_0585: Sama_0585 - hypothetical protein (RefSeq), at 731,480 to 732,361 _0585 Sama_0586: Sama_0586 - LysR family transcriptional regulator (RefSeq), at 732,315 to 733,223 _0586 Position (kb) 731 732 733Strain fitness (log2 ratio) -2 -1 0 1 2at 731.306 kb on + strandat 731.307 kb on - strandat 731.344 kb on + strandat 731.348 kb on + strandat 731.348 kb on + strandat 731.348 kb on + strandat 731.400 kb on + strandat 731.400 kb on + strandat 731.401 kb on - strandat 731.401 kb on - strandat 731.439 kb on - strandat 731.460 kb on - strandat 731.463 kb on + strandat 731.464 kb on - strandat 731.485 kb on + strandat 731.485 kb on + strandat 731.485 kb on + strandat 731.485 kb on + strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.569 kb on + strand, within Sama_0585at 731.569 kb on + strand, within Sama_0585at 731.569 kb on + strand, within Sama_0585at 731.570 kb on - strand, within Sama_0585at 731.570 kb on - strand, within Sama_0585at 731.570 kb on - strand, within Sama_0585at 731.570 kb on - strand, within Sama_0585at 731.582 kb on + strand, within Sama_0585at 731.582 kb on + strand, within Sama_0585at 731.582 kb on + strand, within Sama_0585at 731.583 kb on - strand, within Sama_0585at 731.583 kb on - strand, within Sama_0585at 731.601 kb on - strand, within Sama_0585at 731.601 kb on - strand, within Sama_0585at 731.619 kb on - strand, within Sama_0585at 731.619 kb on - strand, within Sama_0585at 731.619 kb on - strand, within Sama_0585at 731.621 kb on + strand, within Sama_0585at 731.621 kb on + strand, within Sama_0585at 731.621 kb on + strand, within Sama_0585at 731.621 kb on + strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.658 kb on + strand, within Sama_0585at 731.659 kb on - strand, within Sama_0585at 731.723 kb on + strand, within Sama_0585at 731.723 kb on + strand, within Sama_0585at 731.724 kb on - strand, within Sama_0585at 731.724 kb on - strand, within Sama_0585at 731.733 kb on + strand, within Sama_0585at 731.733 kb on + strand, within Sama_0585at 731.734 kb on - strand, within Sama_0585at 731.800 kb on - strand, within Sama_0585at 731.800 kb on - strand, within Sama_0585at 731.848 kb on + strand, within Sama_0585at 731.848 kb on + strand, within Sama_0585at 731.849 kb on - strand, within Sama_0585at 731.913 kb on + strand, within Sama_0585at 731.914 kb on - strand, within Sama_0585at 731.925 kb on + strand, within Sama_0585at 731.926 kb on - strand, within Sama_0585at 731.926 kb on - strand, within Sama_0585at 732.001 kb on + strand, within Sama_0585at 732.001 kb on + strand, within Sama_0585at 732.007 kb on + strand, within Sama_0585at 732.008 kb on - strand, within Sama_0585at 732.008 kb on - strand, within Sama_0585at 732.008 kb on - strand, within Sama_0585at 732.018 kb on + strand, within Sama_0585at 732.019 kb on - strand, within Sama_0585at 732.073 kb on + strand, within Sama_0585at 732.073 kb on + strand, within Sama_0585at 732.073 kb on + strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.091 kb on + strand, within Sama_0585at 732.189 kb on - strand, within Sama_0585at 732.207 kb on + strand, within Sama_0585at 732.218 kb on + strand, within Sama_0585at 732.218 kb on + strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.250 kb on + strand, within Sama_0585at 732.251 kb on - strand, within Sama_0585at 732.251 kb on - strand, within Sama_0585at 732.252 kb on + strand, within Sama_0585at 732.252 kb on + strand, within Sama_0585at 732.252 kb on + strand, within Sama_0585at 732.253 kb on - strand, within Sama_0585at 732.253 kb on - strand, within Sama_0585at 732.253 kb on - strand, within Sama_0585at 732.253 kb on - strand, within Sama_0585at 732.307 kb on + strandat 732.308 kb on - strandat 732.317 kb on - strandat 732.444 kb on + strand, within Sama_0586at 732.444 kb on + strand, within Sama_0586at 732.444 kb on + strand, within Sama_0586at 732.444 kb on + strand, within Sama_0586at 732.445 kb on - strand, within Sama_0586at 732.502 kb on - strand, within Sama_0586at 732.502 kb on - strand, within Sama_0586at 732.562 kb on + strand, within Sama_0586at 732.579 kb on + strand, within Sama_0586at 732.637 kb on + strand, within Sama_0586at 732.637 kb on + strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.644 kb on + strand, within Sama_0586at 732.644 kb on + strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.730 kb on + strand, within Sama_0586at 732.871 kb on + strand, within Sama_0586at 732.872 kb on - strand, within Sama_0586at 732.943 kb on + strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.973 kb on - strand, within Sama_0586at 732.973 kb on - strand, within Sama_0586at 732.987 kb on + strand, within Sama_0586at 733.250 kb on + strandat 733.261 kb on + strandat 733.266 kb on - strandat 733.266 kb on - strandat 733.282 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.336 kb on - strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.351 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 5 mM
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731,306 + -0.5
731,307 - +1.1
731,344 + +0.8
731,348 + -0.1
731,348 + +1.1
731,348 + -0.8
731,400 + -1.5
731,400 + -1.3
731,401 - -0.5
731,401 - +0.9
731,439 - +1.3
731,460 - +0.5
731,463 + +0.8
731,464 - +1.4
731,485 + +0.8
731,485 + +0.5
731,485 + -2.3
731,485 + +0.9
731,486 - -0.0
731,486 - +0.2
731,486 - +0.5
731,486 - -1.4
731,569 + Sama_0585 0.10 -0.4
731,569 + Sama_0585 0.10 +1.0
731,569 + Sama_0585 0.10 +0.2
731,570 - Sama_0585 0.10 -1.5
731,570 - Sama_0585 0.10 -0.4
731,570 - Sama_0585 0.10 -0.6
731,570 - Sama_0585 0.10 +0.6
731,582 + Sama_0585 0.12 +0.8
731,582 + Sama_0585 0.12 -0.6
731,582 + Sama_0585 0.12 +1.3
731,583 - Sama_0585 0.12 -1.6
731,583 - Sama_0585 0.12 -1.1
731,601 - Sama_0585 0.14 -0.3
731,601 - Sama_0585 0.14 +0.3
731,619 - Sama_0585 0.16 -0.6
731,619 - Sama_0585 0.16 +0.2
731,619 - Sama_0585 0.16 +0.5
731,621 + Sama_0585 0.16 -1.0
731,621 + Sama_0585 0.16 -0.4
731,621 + Sama_0585 0.16 -0.6
731,621 + Sama_0585 0.16 +1.2
731,622 - Sama_0585 0.16 -0.1
731,622 - Sama_0585 0.16 -0.3
731,622 - Sama_0585 0.16 +0.3
731,622 - Sama_0585 0.16 +1.0
731,622 - Sama_0585 0.16 -1.5
731,622 - Sama_0585 0.16 +0.4
731,622 - Sama_0585 0.16 +0.1
731,622 - Sama_0585 0.16 -0.8
731,623 + Sama_0585 0.16 +1.5
731,623 + Sama_0585 0.16 -0.2
731,623 + Sama_0585 0.16 -0.1
731,623 + Sama_0585 0.16 -0.1
731,623 + Sama_0585 0.16 -0.5
731,623 + Sama_0585 0.16 -0.2
731,624 - Sama_0585 0.16 -0.8
731,624 - Sama_0585 0.16 +0.5
731,624 - Sama_0585 0.16 +0.5
731,624 - Sama_0585 0.16 -0.1
731,624 - Sama_0585 0.16 -1.1
731,624 - Sama_0585 0.16 +0.5
731,658 + Sama_0585 0.20 +0.2
731,659 - Sama_0585 0.20 +1.4
731,723 + Sama_0585 0.28 -0.2
731,723 + Sama_0585 0.28 +0.1
731,724 - Sama_0585 0.28 -0.3
731,724 - Sama_0585 0.28 +0.5
731,733 + Sama_0585 0.29 +0.8
731,733 + Sama_0585 0.29 +0.8
731,734 - Sama_0585 0.29 -0.5
731,800 - Sama_0585 0.36 -0.4
731,800 - Sama_0585 0.36 -0.1
731,848 + Sama_0585 0.42 +1.0
731,848 + Sama_0585 0.42 +0.8
731,849 - Sama_0585 0.42 +0.9
731,913 + Sama_0585 0.49 -0.1
731,914 - Sama_0585 0.49 +0.5
731,925 + Sama_0585 0.50 -0.2
731,926 - Sama_0585 0.51 +1.1
731,926 - Sama_0585 0.51 +0.6
732,001 + Sama_0585 0.59 -0.3
732,001 + Sama_0585 0.59 +0.1
732,007 + Sama_0585 0.60 -1.0
732,008 - Sama_0585 0.60 -0.4
732,008 - Sama_0585 0.60 +0.2
732,008 - Sama_0585 0.60 +0.7
732,018 + Sama_0585 0.61 -0.3
732,019 - Sama_0585 0.61 +0.8
732,073 + Sama_0585 0.67 +0.3
732,073 + Sama_0585 0.67 -0.3
732,073 + Sama_0585 0.67 -0.3
732,074 - Sama_0585 0.67 -0.8
732,074 - Sama_0585 0.67 -0.3
732,074 - Sama_0585 0.67 -0.4
732,074 - Sama_0585 0.67 -0.7
732,074 - Sama_0585 0.67 -0.6
732,074 - Sama_0585 0.67 -1.7
732,074 - Sama_0585 0.67 -1.5
732,091 + Sama_0585 0.69 +1.5
732,189 - Sama_0585 0.80 +0.0
732,207 + Sama_0585 0.82 +0.8
732,218 + Sama_0585 0.84 +0.5
732,218 + Sama_0585 0.84 +0.7
732,219 - Sama_0585 0.84 +1.3
732,219 - Sama_0585 0.84 +0.6
732,219 - Sama_0585 0.84 -0.5
732,219 - Sama_0585 0.84 +1.5
732,219 - Sama_0585 0.84 -0.6
732,219 - Sama_0585 0.84 -0.3
732,219 - Sama_0585 0.84 -0.6
732,219 - Sama_0585 0.84 -0.6
732,250 + Sama_0585 0.87 -0.5
732,251 - Sama_0585 0.87 +0.5
732,251 - Sama_0585 0.87 +0.8
732,252 + Sama_0585 0.88 -0.2
732,252 + Sama_0585 0.88 -0.1
732,252 + Sama_0585 0.88 +0.3
732,253 - Sama_0585 0.88 -0.7
732,253 - Sama_0585 0.88 -1.8
732,253 - Sama_0585 0.88 +0.1
732,253 - Sama_0585 0.88 +0.2
732,307 + +0.7
732,308 - +0.1
732,317 - +0.7
732,444 + Sama_0586 0.14 -1.1
732,444 + Sama_0586 0.14 -0.1
732,444 + Sama_0586 0.14 +1.3
732,444 + Sama_0586 0.14 -0.3
732,445 - Sama_0586 0.14 -0.0
732,502 - Sama_0586 0.21 +0.1
732,502 - Sama_0586 0.21 +0.1
732,562 + Sama_0586 0.27 -0.1
732,579 + Sama_0586 0.29 -0.3
732,637 + Sama_0586 0.35 +0.8
732,637 + Sama_0586 0.35 +0.3
732,638 - Sama_0586 0.36 +0.2
732,638 - Sama_0586 0.36 +0.4
732,638 - Sama_0586 0.36 +0.1
732,638 - Sama_0586 0.36 -0.7
732,638 - Sama_0586 0.36 +0.0
732,638 - Sama_0586 0.36 +1.2
732,644 + Sama_0586 0.36 -1.1
732,644 + Sama_0586 0.36 +1.1
732,645 - Sama_0586 0.36 +2.1
732,645 - Sama_0586 0.36 +1.1
732,645 - Sama_0586 0.36 +0.7
732,645 - Sama_0586 0.36 -0.4
732,730 + Sama_0586 0.46 -0.1
732,871 + Sama_0586 0.61 -0.4
732,872 - Sama_0586 0.61 +1.9
732,943 + Sama_0586 0.69 +0.4
732,944 - Sama_0586 0.69 -0.7
732,944 - Sama_0586 0.69 +0.7
732,944 - Sama_0586 0.69 -0.4
732,944 - Sama_0586 0.69 +0.2
732,973 - Sama_0586 0.72 -0.2
732,973 - Sama_0586 0.72 +0.0
732,987 + Sama_0586 0.74 -0.2
733,250 + +0.3
733,261 + +0.2
733,266 - +0.3
733,266 - -0.9
733,282 + +0.1
733,335 + -1.6
733,335 + -0.6
733,335 + +1.5
733,335 + -1.7
733,335 + -0.3
733,335 + -0.8
733,336 - +0.4
733,350 + -0.2
733,350 + -0.8
733,350 + +0.2
733,350 + -0.5
733,350 + -0.8
733,351 - -0.8

Or see this region's nucleotide sequence