Strain Fitness in Shewanella amazonensis SB2B around Sama_0127

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
141,834	+				-0.2
141,834	+				+0.6
141,834	+				+1.0
141,834	+				+0.5
141,834	+				+0.5
141,834	+				-0.6
141,834	+				+2.0
141,834	+				+0.1
141,834	+				+0.4
141,834	+				+1.1
141,835	-				+0.1
141,835	-				-0.8
141,835	-				-0.2
141,835	-				+1.7
141,835	-				+0.5
141,835	-				-0.6
141,871	+				+1.2
141,871	+				+0.6
141,872	-				-0.3
141,872	-				+0.7
141,884	+				+0.6
141,884	+				-0.1
141,885	-				+0.6
141,920	+				-0.9
141,921	-				-1.2
141,957	-				+0.1
142,030	-				+0.7
142,030	-				-0.1
142,030	-				+0.6
142,183	-				+0.5
142,183	-				+0.6
142,183	-				-0.1
142,183	-				+0.1
142,232	+				+0.5
142,232	+				+0.4
142,233	-				-0.1
142,253	+				-2.1
142,253	+				-0.4
142,253	+				+0.4
142,254	-				+0.8
142,254	-				-0.6
142,254	-				-0.2
142,254	-				-0.6
142,254	-				-1.3
142,254	-				+1.0
142,254	-				+0.5
142,254	-				+0.4
142,254	-				-0.7
142,326	-				+0.4
142,350	+				-0.0
142,350	+				+0.9
142,351	-				-0.3
142,351	-				-0.2
142,351	-				-0.8
142,351	-				-1.2
142,362	+				-1.1
142,362	+				-0.0
142,363	-				-0.7
142,368	+				+0.1
142,368	+				-0.6
142,368	+				+0.5
142,422	+				-0.0
142,422	+				-0.5
142,422	+				-1.2
142,422	+				-0.4
142,422	+				-0.3
142,422	+				-0.3
142,422	+				-0.3
142,423	-				-0.5
142,423	-				-0.1
142,502	+				-0.8
142,502	+				-0.2
142,503	-				-0.8
142,512	+				-0.3
142,512	+				+0.2
142,512	+				-0.6
142,512	+				-1.6
142,512	+				-1.9
142,513	-				+0.3
142,513	-				+0.7
142,513	-				-0.5
142,513	-				+0.8
142,513	-				-0.5
142,513	-				-0.0
142,513	-				+2.0
142,533	+				-0.3
142,533	+				+1.1
142,534	-				-0.5
142,534	-				-0.1
142,534	-				-0.5
142,534	-				-0.7
142,534	-				-0.2
142,534	-				-0.4
142,534	-				-0.9
142,534	-				-0.1
142,554	+				-0.2
142,554	+				-1.7
142,555	-				+1.0
142,555	-				+0.1
142,555	-				-0.3
142,569	+				+0.5
142,597	-				+0.1
142,603	-				+0.3
142,661	+				-1.1
142,662	-				-0.7
142,710	-				+0.0
142,732	+				+0.9
142,732	+				+0.1
142,805	+				+0.0
142,805	+				+1.3
142,895	+		Sama_0127	0.19	+0.3
142,937	+		Sama_0127	0.28	-0.5
142,937	+		Sama_0127	0.28	-0.4
142,953	+		Sama_0127	0.31	-0.5
142,953	+		Sama_0127	0.31	-2.3
142,953	+		Sama_0127	0.31	-0.1
142,953	+		Sama_0127	0.31	+0.4
142,953	+		Sama_0127	0.31	+0.9
142,953	+		Sama_0127	0.31	-0.6
142,953	+		Sama_0127	0.31	+1.3
142,953	+		Sama_0127	0.31	+0.3
142,953	+		Sama_0127	0.31	+0.7
142,953	+		Sama_0127	0.31	-0.3
142,954	-		Sama_0127	0.32	+0.7
142,954	-		Sama_0127	0.32	+1.1
143,049	+		Sama_0127	0.52	-0.3
143,049	+		Sama_0127	0.52	-1.5
143,049	+		Sama_0127	0.52	+0.0
143,049	+		Sama_0127	0.52	-0.0
143,049	+		Sama_0127	0.52	+0.2
143,049	+		Sama_0127	0.52	-0.1
143,050	-		Sama_0127	0.52	-0.4
143,050	-		Sama_0127	0.52	-1.5
143,050	-		Sama_0127	0.52	+1.3
143,050	-		Sama_0127	0.52	-0.2
143,050	-		Sama_0127	0.52	+0.7
143,074	-		Sama_0127	0.58	+0.4
143,109	+		Sama_0127	0.65	-0.1
143,109	+		Sama_0127	0.65	-0.3
143,109	+		Sama_0127	0.65	-0.1
143,109	+		Sama_0127	0.65	+0.5
143,109	+		Sama_0127	0.65	+0.2
143,109	+		Sama_0127	0.65	-0.6
143,110	-		Sama_0127	0.65	+0.3
143,110	-		Sama_0127	0.65	+3.3
143,252	+				-0.3
143,253	-				+1.1
143,253	-				+0.1
143,253	-				-0.9
143,253	-				-1.4
143,257	+				+0.1
143,257	+				-0.4
143,258	-				+0.3
143,258	-				-0.7
143,265	+				-0.3
143,265	+				+0.1
143,265	+				+0.4
143,265	+				-0.6
143,265	+				-0.5
143,265	+				-0.5
143,265	+				-0.5
143,265	+				-0.8
143,266	-				-0.8
143,266	-				-0.4
143,266	-				+0.2
143,328	+				+0.0
143,328	+				+0.5
143,328	+				-0.9
143,329	-				+1.2
143,330	+				+2.1
143,331	-				-0.9
143,378	+				-0.9
143,411	+				+0.1
143,411	+				+0.2
143,411	+				-0.3
143,411	+				-0.1
143,411	+				-0.5
143,412	-				+0.0
143,412	-				-0.4
143,412	-				+0.2
143,412	-				-1.1
143,412	-				+0.1
143,412	-				+0.1
143,418	+		Sama_0128	0.10	+0.3
143,444	+		Sama_0128	0.14	-0.2
143,455	+		Sama_0128	0.16	+0.7
143,455	+		Sama_0128	0.16	-0.6
143,455	+		Sama_0128	0.16	+0.2
143,456	-		Sama_0128	0.16	+1.7
143,456	-		Sama_0128	0.16	+0.4
143,456	-		Sama_0128	0.16	-1.1
143,463	+		Sama_0128	0.17	+0.3
143,520	+		Sama_0128	0.26	+0.0
143,520	+		Sama_0128	0.26	-1.2
143,520	+		Sama_0128	0.26	+0.1
143,520	+		Sama_0128	0.26	-0.2
143,520	+		Sama_0128	0.26	-0.1
143,520	+		Sama_0128	0.26	+0.3
143,520	+		Sama_0128	0.26	+1.1
143,520	+		Sama_0128	0.26	+2.1
143,520	+		Sama_0128	0.26	-0.6
143,520	+		Sama_0128	0.26	-1.1
143,520	+		Sama_0128	0.26	-0.3
143,521	-		Sama_0128	0.26	-0.2
143,521	-		Sama_0128	0.26	-1.6
143,521	-		Sama_0128	0.26	-0.2
143,521	-		Sama_0128	0.26	-0.6
143,521	-		Sama_0128	0.26	+0.2
143,521	-		Sama_0128	0.26	+0.2
143,521	-		Sama_0128	0.26	-0.9
143,521	-		Sama_0128	0.26	-1.3
143,521	-		Sama_0128	0.26	+1.0
143,521	-		Sama_0128	0.26	+0.1
143,521	-		Sama_0128	0.26	-1.1
143,521	-		Sama_0128	0.26	-0.5
143,564	+		Sama_0128	0.32	+0.4
143,565	-		Sama_0128	0.32	-0.3
143,624	+		Sama_0128	0.41	-0.4
143,624	+		Sama_0128	0.41	+0.3
143,625	-		Sama_0128	0.42	+0.2
143,633	-		Sama_0128	0.43	-0.3
143,634	+		Sama_0128	0.43	-0.2
143,655	+		Sama_0128	0.46	+1.3
143,655	+		Sama_0128	0.46	-0.5
143,656	-		Sama_0128	0.46	+0.1
143,656	-		Sama_0128	0.46	+0.1
143,680	+		Sama_0128	0.50	+0.0
143,747	+		Sama_0128	0.60	-0.2
143,747	+		Sama_0128	0.60	+0.4
143,747	+		Sama_0128	0.60	-0.3
143,747	+		Sama_0128	0.60	+0.8
143,747	+		Sama_0128	0.60	+0.3
143,748	-		Sama_0128	0.60	-0.1
143,748	-		Sama_0128	0.60	+1.3
143,748	-		Sama_0128	0.60	+0.7
143,748	-		Sama_0128	0.60	+0.5
143,755	+		Sama_0128	0.61	-0.1
143,756	-		Sama_0128	0.61	+0.4
143,760	+		Sama_0128	0.62	+0.1
143,760	+		Sama_0128	0.62	-0.1
143,761	-		Sama_0128	0.62	-1.3
143,761	-		Sama_0128	0.62	-1.2
143,761	-		Sama_0128	0.62	+0.0
143,797	+		Sama_0128	0.68	+0.6
143,853	+		Sama_0128	0.76	+1.5
143,853	+		Sama_0128	0.76	-0.8
143,853	+		Sama_0128	0.76	-0.6
143,854	-		Sama_0128	0.76	-0.5
143,854	-		Sama_0128	0.76	-0.6
143,854	-		Sama_0128	0.76	+0.7
143,854	-		Sama_0128	0.76	-0.6
143,884	+		Sama_0128	0.81	-1.4
143,884	+		Sama_0128	0.81	-0.3
143,884	+		Sama_0128	0.81	-0.1
143,885	-		Sama_0128	0.81	-1.0
143,885	-		Sama_0128	0.81	+1.4
143,925	+		Sama_0128	0.87	+1.4
143,926	-		Sama_0128	0.87	-0.2
143,926	-		Sama_0128	0.87	+0.1
143,929	+		Sama_0128	0.88	-0.5
143,929	+		Sama_0128	0.88	-0.6
143,929	+		Sama_0128	0.88	+0.6
143,999	+				-0.6
144,000	-				-0.6
144,000	-				+1.4
144,000	-				-1.4
144,010	+				+0.5
144,010	+				-0.9
144,010	+				+0.4
144,010	+				-0.4
144,010	+				-1.0
144,010	+				+0.3
144,010	+				+0.6
144,010	+				+0.7
144,010	+				+0.8
144,010	+				-1.0
144,011	-				+0.2
144,011	-				+0.0
144,011	-				-0.1
144,011	-				+0.1
144,011	-				-0.8
144,011	-				+0.4
144,011	-				+0.4
144,059	+				-1.0
144,059	+				-0.4
144,060	-				-0.4
144,093	+				-0.2
144,093	+				+0.1
144,093	+				-0.6
144,093	+				-1.2
144,094	-				-0.0
144,094	-				+0.5
144,094	-				-0.2
144,094	-				-1.1
144,094	-				-0.4
144,094	-				+0.2
144,094	-				+0.1
144,095	+				-0.4
144,095	+				-1.5
144,095	+				-0.2
144,095	+				-2.0
144,095	+				+0.0
144,095	+				-1.2
144,095	+				-1.4
144,096	-				+0.1
144,096	-				+0.7
144,096	-				-0.9
144,122	+				-0.5
144,149	+				-0.7
144,149	+				-1.0
144,149	+				+1.7
144,150	-				+0.1
144,151	+				-0.6
144,151	+				-0.6
144,151	+				-1.4
144,152	-				-0.8
144,152	-				+0.4
144,152	-				-0.2
144,152	-				-0.3
144,152	-				-0.2
144,152	-				+1.4
144,161	-				-0.3
144,216	-				+0.2
144,216	-				-0.9
144,221	+				-0.7
144,221	+				+0.5
144,221	+				-1.0
144,221	+				-0.5
144,221	+				+0.1
144,221	+				+0.2
144,221	+				-0.3
144,221	+				-0.1
144,221	+				-0.3
144,221	+				-0.5
144,221	+				-0.3
144,221	+				-0.7
144,221	+				+0.3
144,221	+				-0.3
144,221	+				-0.0
144,221	+				-0.1
144,221	+				-0.7
144,221	+				-0.6
144,221	+				-0.9
144,221	+				-0.0
144,221	+				-0.1
144,221	+				-0.5
144,222	-				+0.6
144,222	-				+0.6
144,222	-				-0.2
144,222	-				+1.2
144,222	-				+0.5
144,222	-				+0.7
144,222	-				+0.8
144,222	-				+1.3
144,222	-				+0.7
144,222	-				-0.3
144,222	-				-0.4
144,222	-				-0.2
144,222	-				-0.9
144,222	-				+0.2
144,222	-				+0.6
144,222	-				+0.5
144,222	-				-0.1
144,222	-				-1.1
144,222	-				+1.7
144,222	-				-0.4
144,222	-				-1.1
144,254	-				+0.9