Strain Fitness in Shewanella amazonensis SB2B around Sama_0097

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
108,863	+		Sama_0095	0.41	-0.5
108,863	+		Sama_0095	0.41	+0.3
108,863	+		Sama_0095	0.41	-0.5
108,863	+		Sama_0095	0.41	-0.1
108,863	+		Sama_0095	0.41	-0.8
108,863	+		Sama_0095	0.41	+0.6
108,863	+		Sama_0095	0.41	-0.1
108,864	-		Sama_0095	0.41	-0.7
108,864	-		Sama_0095	0.41	-0.4
108,891	+		Sama_0095	0.44	-0.4
108,891	+		Sama_0095	0.44	-1.1
108,891	+		Sama_0095	0.44	-0.5
108,892	-		Sama_0095	0.44	+0.1
108,892	-		Sama_0095	0.44	+1.1
108,892	-		Sama_0095	0.44	+0.9
108,892	-		Sama_0095	0.44	+0.6
108,989	+		Sama_0095	0.56	-0.1
108,989	+		Sama_0095	0.56	+0.4
108,989	+		Sama_0095	0.56	+0.5
108,989	+		Sama_0095	0.56	-0.5
108,989	+		Sama_0095	0.56	-0.1
108,989	+		Sama_0095	0.56	+0.5
108,989	+		Sama_0095	0.56	-0.6
108,990	-		Sama_0095	0.56	-0.8
108,990	-		Sama_0095	0.56	-1.1
109,015	-		Sama_0095	0.59	+0.6
109,015	-		Sama_0095	0.59	-0.7
109,023	+		Sama_0095	0.60	+1.3
109,024	-		Sama_0095	0.60	+0.1
109,024	-		Sama_0095	0.60	-0.0
109,024	-		Sama_0095	0.60	+4.0
109,025	+		Sama_0095	0.60	-0.6
109,026	-		Sama_0095	0.61	+0.1
109,035	+		Sama_0095	0.62	-0.5
109,036	-		Sama_0095	0.62	-0.9
109,048	+		Sama_0095	0.63	+0.5
109,049	-		Sama_0095	0.63	-0.2
109,049	-		Sama_0095	0.63	+0.1
109,049	-		Sama_0095	0.63	-2.1
109,059	+		Sama_0095	0.65	+0.1
109,060	-		Sama_0095	0.65	-0.5
109,060	-		Sama_0095	0.65	-0.6
109,115	+		Sama_0095	0.71	-0.6
109,115	+		Sama_0095	0.71	-0.4
109,115	+		Sama_0095	0.71	+0.2
109,116	-		Sama_0095	0.71	+0.5
109,116	-		Sama_0095	0.71	+0.5
109,116	-		Sama_0095	0.71	-0.3
109,116	-		Sama_0095	0.71	-0.6
109,116	-		Sama_0095	0.71	-0.2
109,119	+		Sama_0095	0.72	-0.8
109,120	-		Sama_0095	0.72	+0.7
109,134	+		Sama_0095	0.74	+0.0
109,135	-		Sama_0095	0.74	-0.1
109,163	+		Sama_0095	0.77	-1.6
109,163	+		Sama_0095	0.77	+0.0
109,163	+		Sama_0095	0.77	-0.4
109,164	-		Sama_0095	0.77	-0.4
109,164	-		Sama_0095	0.77	-1.0
109,167	+		Sama_0095	0.77	-0.3
109,167	+		Sama_0095	0.77	-1.1
109,167	+		Sama_0095	0.77	+0.2
109,167	+		Sama_0095	0.77	-0.1
109,167	+		Sama_0095	0.77	+2.0
109,167	+		Sama_0095	0.77	+0.5
109,167	+		Sama_0095	0.77	-0.2
109,167	+		Sama_0095	0.77	-0.1
109,168	-		Sama_0095	0.78	+0.0
109,168	-		Sama_0095	0.78	+0.1
109,168	-		Sama_0095	0.78	-0.6
109,168	-		Sama_0095	0.78	-0.1
109,168	-		Sama_0095	0.78	-2.2
109,168	-		Sama_0095	0.78	-0.6
109,168	-		Sama_0095	0.78	+0.5
109,168	-		Sama_0095	0.78	-0.3
109,168	-		Sama_0095	0.78	-1.1
109,168	-		Sama_0095	0.78	-0.7
109,168	-		Sama_0095	0.78	+0.4
109,168	-		Sama_0095	0.78	+1.3
109,168	-		Sama_0095	0.78	-1.3
109,168	-		Sama_0095	0.78	-1.0
109,168	-		Sama_0095	0.78	-3.2
109,193	+		Sama_0095	0.81	-1.2
109,274	-				+1.3
109,282	+				-0.8
109,282	+				-0.9
109,282	+				+0.3
109,282	+				-0.0
109,282	+				-0.2
109,283	-				-2.3
109,283	-				-0.2
109,283	-				+0.5
109,283	-				-0.5
109,301	+				-0.0
109,301	+				+0.1
109,301	+				-0.1
109,301	+				+0.1
109,301	+				+0.5
109,367	+				+0.4
109,380	-				+0.5
109,380	-				+0.1
109,380	-				-0.5
109,380	-				+0.2
109,382	-				-0.2
109,382	-				+1.1
109,429	+		Sama_0096	0.24	+0.7
109,429	+		Sama_0096	0.24	+0.3
109,429	+		Sama_0096	0.24	-0.2
109,430	-		Sama_0096	0.25	+0.5
109,430	-		Sama_0096	0.25	+0.1
109,455	-		Sama_0096	0.33	+0.1
109,455	-		Sama_0096	0.33	-0.8
109,462	+		Sama_0096	0.35	-0.2
109,463	-		Sama_0096	0.35	-0.1
109,484	+		Sama_0096	0.42	+0.5
109,485	-		Sama_0096	0.42	+1.0
109,485	-		Sama_0096	0.42	-0.7
109,506	-		Sama_0096	0.49	+0.1
109,521	-		Sama_0096	0.54	-1.0
109,521	-		Sama_0096	0.54	+0.8
109,536	+		Sama_0096	0.59	+0.3
109,537	-		Sama_0096	0.59	+0.4
109,550	+		Sama_0096	0.63	+0.1
109,551	-		Sama_0096	0.63	-0.6
109,551	-		Sama_0096	0.63	+0.4
109,551	-		Sama_0096	0.63	-1.0
109,583	+		Sama_0096	0.74	+0.1
109,596	+		Sama_0096	0.78	-1.0
109,597	-		Sama_0096	0.78	-0.1
109,604	+		Sama_0096	0.80	-0.3
109,604	+		Sama_0096	0.80	+0.4
109,604	+		Sama_0096	0.80	+0.4
109,604	+		Sama_0096	0.80	+0.6
109,604	+		Sama_0096	0.80	-0.5
109,604	+		Sama_0096	0.80	+0.4
109,605	-		Sama_0096	0.81	+0.7
109,605	-		Sama_0096	0.81	-0.5
109,605	-		Sama_0096	0.81	-0.6
109,605	-		Sama_0096	0.81	+0.8
109,605	-		Sama_0096	0.81	+0.2
109,605	-		Sama_0096	0.81	+0.5
109,605	-		Sama_0096	0.81	-0.1
109,622	+		Sama_0096	0.86	-0.6
109,622	+		Sama_0096	0.86	+0.2
109,623	-		Sama_0096	0.87	-0.9
109,623	-		Sama_0096	0.87	-0.9
109,623	-		Sama_0096	0.87	+1.1
109,623	-		Sama_0096	0.87	-1.1
109,623	-		Sama_0096	0.87	-1.0
109,623	-		Sama_0096	0.87	+0.7
109,652	+				+0.3
109,652	+				+0.3
109,652	+				-0.4
109,652	+				-0.2
109,653	-				-1.2
109,677	-				-1.0
109,697	+				-0.2
109,697	+				-0.3
109,697	+				-0.3
109,697	+				-0.4
109,697	+				-0.3
109,697	+				-0.9
109,697	+				-0.7
109,697	+				-1.6
109,698	-				+0.1
109,698	-				+0.2
109,698	-				-0.3
109,698	-				+0.8
109,717	+				-0.3
109,717	+				+0.1
109,717	+				-0.6
109,717	+				+0.4
109,717	+				-0.8
109,717	+				+0.1
109,717	+				+0.8
109,718	-				+0.3
109,718	-				+0.1
109,718	-				-1.1
109,718	-				+0.7
109,718	-				-0.4
109,718	-				-1.1
109,718	-				+0.3
109,718	-				-0.5
109,718	-				-0.2
109,718	-				+0.2
109,725	-				+2.0
109,740	+				-0.3
109,740	+				-1.2
109,740	+				-0.9
109,741	-				+0.7
109,741	-				-1.3
109,743	-				+0.5
109,743	-				+0.1
109,743	-				-1.1
109,792	+				+4.5
109,792	+				+1.1
109,930	+	tdh	Sama_0097	0.14	-0.2
109,930	+	tdh	Sama_0097	0.14	-1.8
109,930	+	tdh	Sama_0097	0.14	-0.4
109,931	-	tdh	Sama_0097	0.14	-1.5
109,957	+	tdh	Sama_0097	0.16	-0.7
109,958	-	tdh	Sama_0097	0.16	-1.1
109,958	-	tdh	Sama_0097	0.16	-0.0
109,958	-	tdh	Sama_0097	0.16	+1.5
109,958	-	tdh	Sama_0097	0.16	-0.5
109,958	-	tdh	Sama_0097	0.16	-0.5
110,027	+	tdh	Sama_0097	0.23	-0.1
110,028	-	tdh	Sama_0097	0.23	-1.8
110,190	-	tdh	Sama_0097	0.39	-0.2
110,222	-	tdh	Sama_0097	0.42	-1.0
110,289	-	tdh	Sama_0097	0.49	-1.6
110,289	-	tdh	Sama_0097	0.49	-1.3
110,312	+	tdh	Sama_0097	0.51	-0.5
110,312	+	tdh	Sama_0097	0.51	-2.0
110,313	-	tdh	Sama_0097	0.51	-1.6
110,328	+	tdh	Sama_0097	0.52	-1.9
110,363	+	tdh	Sama_0097	0.56	+1.1
110,363	+	tdh	Sama_0097	0.56	-1.0
110,402	+	tdh	Sama_0097	0.60	-1.1
110,402	+	tdh	Sama_0097	0.60	-0.7
110,403	-	tdh	Sama_0097	0.60	-1.9
110,403	-	tdh	Sama_0097	0.60	+0.3
110,403	-	tdh	Sama_0097	0.60	-1.7
110,446	+	tdh	Sama_0097	0.64	-1.1
110,446	+	tdh	Sama_0097	0.64	-0.3
110,446	+	tdh	Sama_0097	0.64	-0.5
110,447	-	tdh	Sama_0097	0.64	+1.3
110,447	-	tdh	Sama_0097	0.64	-0.0
110,472	+	tdh	Sama_0097	0.66	+0.6
110,473	-	tdh	Sama_0097	0.66	-0.9
110,473	-	tdh	Sama_0097	0.66	-0.3
110,473	-	tdh	Sama_0097	0.66	-1.3
110,490	-	tdh	Sama_0097	0.68	-0.5
110,526	-	tdh	Sama_0097	0.72	-0.9
110,526	-	tdh	Sama_0097	0.72	-1.0
110,546	+	tdh	Sama_0097	0.74	-1.0
110,546	+	tdh	Sama_0097	0.74	-1.6
110,546	+	tdh	Sama_0097	0.74	-0.0
110,547	-	tdh	Sama_0097	0.74	-0.4
110,623	+	tdh	Sama_0097	0.81	-1.3
110,623	+	tdh	Sama_0097	0.81	-0.6
110,623	+	tdh	Sama_0097	0.81	-2.6
110,624	-	tdh	Sama_0097	0.81	-0.6
110,624	-	tdh	Sama_0097	0.81	-0.9
110,634	+	tdh	Sama_0097	0.82	-0.3
110,634	+	tdh	Sama_0097	0.82	-0.3
110,634	+	tdh	Sama_0097	0.82	-0.5
110,634	+	tdh	Sama_0097	0.82	-1.1
110,635	-	tdh	Sama_0097	0.82	-0.3
110,635	-	tdh	Sama_0097	0.82	-1.6
110,635	-	tdh	Sama_0097	0.82	-0.4
110,635	-	tdh	Sama_0097	0.82	-1.1
110,635	-	tdh	Sama_0097	0.82	-0.8
110,635	-	tdh	Sama_0097	0.82	+0.5
110,635	-	tdh	Sama_0097	0.82	-1.4
110,635	-	tdh	Sama_0097	0.82	-0.6
110,637	+	tdh	Sama_0097	0.82	-0.2
110,637	+	tdh	Sama_0097	0.82	+0.1
110,637	+	tdh	Sama_0097	0.82	-0.1
110,637	+	tdh	Sama_0097	0.82	-0.0
110,637	+	tdh	Sama_0097	0.82	-0.4
110,637	+	tdh	Sama_0097	0.82	+0.7
110,637	+	tdh	Sama_0097	0.82	-0.3
110,638	-	tdh	Sama_0097	0.83	+1.2
110,638	-	tdh	Sama_0097	0.83	-0.9
110,638	-	tdh	Sama_0097	0.83	-0.2
110,638	-	tdh	Sama_0097	0.83	-0.3
110,638	-	tdh	Sama_0097	0.83	-0.3
110,638	-	tdh	Sama_0097	0.83	-0.4
110,638	-	tdh	Sama_0097	0.83	-1.1
110,638	-	tdh	Sama_0097	0.83	-1.2
110,638	-	tdh	Sama_0097	0.83	+0.6
110,638	-	tdh	Sama_0097	0.83	-1.2
110,638	-	tdh	Sama_0097	0.83	-2.4
110,638	-	tdh	Sama_0097	0.83	+0.4
110,638	-	tdh	Sama_0097	0.83	-0.3
110,642	+	tdh	Sama_0097	0.83	-0.9
110,642	+	tdh	Sama_0097	0.83	-0.7
110,642	+	tdh	Sama_0097	0.83	-1.5
110,643	-	tdh	Sama_0097	0.83	-1.6
110,683	+	tdh	Sama_0097	0.87	-0.2
110,683	+	tdh	Sama_0097	0.87	-1.3
110,683	+	tdh	Sama_0097	0.87	-1.2
110,683	+	tdh	Sama_0097	0.87	+0.8
110,683	+	tdh	Sama_0097	0.87	-0.4
110,683	+	tdh	Sama_0097	0.87	-1.5
110,684	-	tdh	Sama_0097	0.87	-0.6
110,684	-	tdh	Sama_0097	0.87	-0.9
110,684	-	tdh	Sama_0097	0.87	-0.2
110,684	-	tdh	Sama_0097	0.87	-1.9
110,684	-	tdh	Sama_0097	0.87	-0.4
110,684	-	tdh	Sama_0097	0.87	-0.3
110,687	+	tdh	Sama_0097	0.87	-0.4
110,687	+	tdh	Sama_0097	0.87	-1.3
110,687	+	tdh	Sama_0097	0.87	-1.1
110,687	+	tdh	Sama_0097	0.87	-0.3
110,687	+	tdh	Sama_0097	0.87	-0.1
110,687	+	tdh	Sama_0097	0.87	-0.0
110,688	-	tdh	Sama_0097	0.87	+0.7
110,688	-	tdh	Sama_0097	0.87	-1.5
110,688	-	tdh	Sama_0097	0.87	-0.8
110,688	-	tdh	Sama_0097	0.87	+1.1
110,688	-	tdh	Sama_0097	0.87	+0.3
110,688	-	tdh	Sama_0097	0.87	-2.4
110,688	-	tdh	Sama_0097	0.87	-0.8
110,688	-	tdh	Sama_0097	0.87	-0.6
110,688	-	tdh	Sama_0097	0.87	-2.2
110,688	-	tdh	Sama_0097	0.87	+0.7
110,726	+				-0.4
110,726	+				-0.2
110,727	-				-1.3
110,727	-				-0.0
110,742	-				-1.2
110,802	-				-1.9
110,823	-				-1.7
110,823	-				+1.7
110,823	-				-0.9
110,823	-				+0.2
110,859	-				-0.2
110,980	+		Sama_0098	0.12	+0.5
110,980	+		Sama_0098	0.12	-1.3
110,980	+		Sama_0098	0.12	-1.3
110,980	+		Sama_0098	0.12	-0.9
110,980	+		Sama_0098	0.12	-1.8
110,980	+		Sama_0098	0.12	-3.2
110,980	+		Sama_0098	0.12	-1.5
110,980	+		Sama_0098	0.12	-0.6
110,980	+		Sama_0098	0.12	-2.2
110,980	+		Sama_0098	0.12	+0.7
110,981	-		Sama_0098	0.12	-0.4
110,981	-		Sama_0098	0.12	+0.3
110,984	+		Sama_0098	0.12	-1.4
110,985	-		Sama_0098	0.12	-0.2
110,985	-		Sama_0098	0.12	+0.7
110,985	-		Sama_0098	0.12	-2.0
111,109	+		Sama_0098	0.23	-0.1
111,110	-		Sama_0098	0.23	-1.0
111,177	-		Sama_0098	0.28	-1.5
111,220	+		Sama_0098	0.32	-0.7
111,220	+		Sama_0098	0.32	-1.7
111,220	+		Sama_0098	0.32	-1.0
111,221	-		Sama_0098	0.32	-1.2
111,221	-		Sama_0098	0.32	-0.2
111,221	-		Sama_0098	0.32	-0.5
111,274	+		Sama_0098	0.37	-0.6
111,274	+		Sama_0098	0.37	-0.4
111,275	-		Sama_0098	0.37	+0.9
111,275	-		Sama_0098	0.37	-0.8
111,311	+		Sama_0098	0.40	-1.7
111,311	+		Sama_0098	0.40	-0.9
111,311	+		Sama_0098	0.40	-1.8
111,311	+		Sama_0098	0.40	-0.7
111,312	-		Sama_0098	0.40	-0.2
111,312	-		Sama_0098	0.40	+0.2
111,312	-		Sama_0098	0.40	-1.6
111,349	+		Sama_0098	0.43	-0.3
111,349	+		Sama_0098	0.43	-0.4
111,350	-		Sama_0098	0.43	+0.1
111,359	+		Sama_0098	0.44	+0.9
111,359	+		Sama_0098	0.44	-0.7
111,359	+		Sama_0098	0.44	-2.2
111,360	-		Sama_0098	0.44	-1.7
111,360	-		Sama_0098	0.44	-1.2
111,360	-		Sama_0098	0.44	-1.8
111,360	-		Sama_0098	0.44	-0.6
111,380	+		Sama_0098	0.45	-0.3
111,405	+		Sama_0098	0.47	-1.7
111,406	-		Sama_0098	0.48	-1.1
111,406	-		Sama_0098	0.48	-0.4
111,425	-		Sama_0098	0.49	-2.3
111,453	+		Sama_0098	0.52	-1.1
111,453	+		Sama_0098	0.52	-0.3
111,454	-		Sama_0098	0.52	-2.0
111,454	-		Sama_0098	0.52	-1.1
111,454	-		Sama_0098	0.52	-0.3
111,454	-		Sama_0098	0.52	-1.2
111,465	+		Sama_0098	0.53	-1.2
111,465	+		Sama_0098	0.53	-0.9
111,465	+		Sama_0098	0.53	+0.5
111,466	-		Sama_0098	0.53	-0.8
111,466	-		Sama_0098	0.53	-1.9
111,466	-		Sama_0098	0.53	-0.8
111,466	-		Sama_0098	0.53	-1.6
111,466	-		Sama_0098	0.53	-0.4
111,506	+		Sama_0098	0.56	-0.3
111,506	+		Sama_0098	0.56	+0.9
111,506	+		Sama_0098	0.56	-1.2
111,507	-		Sama_0098	0.56	-2.0
111,536	+		Sama_0098	0.58	-1.1
111,536	+		Sama_0098	0.58	+0.1
111,536	+		Sama_0098	0.58	-1.2
111,537	-		Sama_0098	0.59	-0.4
111,537	-		Sama_0098	0.59	-0.3
111,537	-		Sama_0098	0.59	-0.7
111,537	-		Sama_0098	0.59	-0.5
111,560	+		Sama_0098	0.60	-1.9
111,560	+		Sama_0098	0.60	-0.5
111,560	+		Sama_0098	0.60	-1.0
111,561	-		Sama_0098	0.61	-2.4
111,561	-		Sama_0098	0.61	-0.6
111,593	+		Sama_0098	0.63	-1.0
111,594	-		Sama_0098	0.63	-2.1
111,594	-		Sama_0098	0.63	-0.4
111,617	+		Sama_0098	0.65	-0.0
111,617	+		Sama_0098	0.65	-0.8
111,618	-		Sama_0098	0.65	-1.8
111,618	-		Sama_0098	0.65	-0.5
111,618	-		Sama_0098	0.65	-0.5
111,618	-		Sama_0098	0.65	+0.4
111,618	-		Sama_0098	0.65	-2.3
111,618	-		Sama_0098	0.65	-0.0
111,709	+		Sama_0098	0.73	-1.4
111,709	+		Sama_0098	0.73	-0.4
111,719	+		Sama_0098	0.74	-0.6
111,720	-		Sama_0098	0.74	-1.6
111,720	-		Sama_0098	0.74	+1.2
111,720	-		Sama_0098	0.74	-1.4
111,720	-		Sama_0098	0.74	-0.8
111,720	-		Sama_0098	0.74	-1.3
111,720	-		Sama_0098	0.74	+0.6
111,788	+		Sama_0098	0.80	-0.8
111,788	+		Sama_0098	0.80	-1.5
111,789	-		Sama_0098	0.80	+0.1
111,807	-		Sama_0098	0.81	-0.4
111,807	-		Sama_0098	0.81	-0.3