Experiment: nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0054 and Sama_R0001 are separated by 455 nucleotides Sama_R0001 and Sama_R0002 are separated by 266 nucleotides
Sama_0054: Sama_0054 - carbonic anhydrase (RefSeq), at 55,153 to 55,701
_0054
Sama_R0001: Sama_R0001 - 16S ribosomal RNA (RefSeq), at 56,157 to 57,693
_R0001
Sama_R0002: Sama_R0002 - 23S ribosomal RNA (RefSeq), at 57,960 to 60,873
_R0002
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.178 kb on + strand at 55.178 kb on + strand at 55.179 kb on - strand at 55.179 kb on - strand at 55.179 kb on - strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.200 kb on - strand at 55.200 kb on - strand at 55.200 kb on - strand at 55.200 kb on - strand at 55.227 kb on + strand, within Sama_0054 at 55.228 kb on - strand, within Sama_0054 at 55.273 kb on + strand, within Sama_0054 at 55.273 kb on + strand, within Sama_0054 at 55.273 kb on + strand, within Sama_0054 at 55.274 kb on - strand, within Sama_0054 at 55.274 kb on - strand, within Sama_0054 at 55.277 kb on + strand, within Sama_0054 at 55.277 kb on + strand, within Sama_0054 at 55.277 kb on + strand, within Sama_0054 at 55.277 kb on + strand, within Sama_0054 at 55.278 kb on - strand, within Sama_0054 at 55.278 kb on - strand, within Sama_0054 at 55.278 kb on - strand, within Sama_0054 at 55.278 kb on - strand, within Sama_0054 at 55.278 kb on - strand, within Sama_0054 at 55.284 kb on - strand, within Sama_0054 at 55.284 kb on - strand, within Sama_0054 at 55.297 kb on + strand, within Sama_0054 at 55.297 kb on + strand, within Sama_0054 at 55.297 kb on + strand, within Sama_0054 at 55.297 kb on + strand, within Sama_0054 at 55.298 kb on - strand, within Sama_0054 at 55.298 kb on - strand, within Sama_0054 at 55.298 kb on - strand, within Sama_0054 at 55.298 kb on - strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.364 kb on - strand, within Sama_0054 at 55.364 kb on - strand, within Sama_0054 at 55.364 kb on - strand, within Sama_0054 at 55.364 kb on - strand, within Sama_0054 at 55.364 kb on - strand, within Sama_0054 at 55.364 kb on - strand, within Sama_0054 at 55.366 kb on + strand, within Sama_0054 at 55.366 kb on + strand, within Sama_0054 at 55.366 kb on + strand, within Sama_0054 at 55.367 kb on - strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.386 kb on - strand, within Sama_0054 at 55.391 kb on - strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.423 kb on - strand, within Sama_0054 at 55.423 kb on - strand, within Sama_0054 at 55.423 kb on - strand, within Sama_0054 at 55.455 kb on + strand, within Sama_0054 at 55.455 kb on + strand, within Sama_0054 at 55.456 kb on - strand, within Sama_0054 at 55.456 kb on - strand, within Sama_0054 at 55.456 kb on - strand, within Sama_0054 at 55.491 kb on + strand, within Sama_0054 at 55.492 kb on - strand, within Sama_0054 at 55.504 kb on + strand, within Sama_0054 at 55.504 kb on + strand, within Sama_0054 at 55.505 kb on - strand, within Sama_0054 at 55.536 kb on + strand, within Sama_0054 at 55.536 kb on + strand, within Sama_0054 at 55.537 kb on - strand, within Sama_0054 at 55.542 kb on + strand, within Sama_0054 at 55.543 kb on - strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.641 kb on + strand, within Sama_0054 at 55.641 kb on + strand, within Sama_0054 at 55.642 kb on - strand, within Sama_0054 at 55.642 kb on - strand, within Sama_0054 at 55.642 kb on - strand, within Sama_0054 at 55.642 kb on - strand, within Sama_0054 at 55.643 kb on + strand, within Sama_0054 at 55.643 kb on + strand, within Sama_0054 at 55.643 kb on + strand, within Sama_0054 at 55.643 kb on + strand, within Sama_0054 at 55.643 kb on + strand, within Sama_0054 at 55.643 kb on + strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.662 kb on + strand at 55.663 kb on - strand at 55.663 kb on - strand at 55.663 kb on - strand at 55.678 kb on - strand at 55.678 kb on - strand at 55.678 kb on - strand at 55.679 kb on + strand at 55.679 kb on + strand at 55.679 kb on + strand at 55.679 kb on + strand at 55.680 kb on - strand at 55.680 kb on - strand at 55.702 kb on - strand at 55.713 kb on + strand at 55.714 kb on - strand at 55.734 kb on + strand at 55.734 kb on + strand at 55.735 kb on - strand at 55.735 kb on - strand at 55.736 kb on + strand at 55.736 kb on + strand at 55.736 kb on + strand at 55.736 kb on + strand at 55.736 kb on + strand at 55.737 kb on - strand at 55.737 kb on - strand at 55.737 kb on - strand at 55.737 kb on - strand at 55.737 kb on - strand at 55.737 kb on - strand at 55.802 kb on - strand at 55.836 kb on - strand at 55.836 kb on - strand at 55.836 kb on - strand at 55.836 kb on - strand at 55.838 kb on - strand at 55.838 kb on - strand at 56.580 kb on + strand, within Sama_R0001 at 56.580 kb on + strand, within Sama_R0001 at 56.615 kb on + strand, within Sama_R0001 at 56.615 kb on + strand, within Sama_R0001 at 56.615 kb on + strand, within Sama_R0001 at 56.618 kb on + strand, within Sama_R0001 at 56.618 kb on + strand, within Sama_R0001 at 56.618 kb on + strand, within Sama_R0001 at 56.618 kb on + strand, within Sama_R0001
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 5 mM remove 55,178 + +1.1 55,178 + -0.6 55,179 - -0.8 55,179 - +0.0 55,179 - +1.0 55,199 + -0.7 55,199 + -0.6 55,199 + +0.3 55,199 + +1.7 55,199 + -0.2 55,199 + -0.1 55,199 + -0.3 55,199 + +0.1 55,200 - -0.0 55,200 - +1.7 55,200 - -0.6 55,200 - +2.7 55,227 + Sama_0054 0.13 +0.6 55,228 - Sama_0054 0.14 +0.3 55,273 + Sama_0054 0.22 -0.2 55,273 + Sama_0054 0.22 -0.3 55,273 + Sama_0054 0.22 +0.5 55,274 - Sama_0054 0.22 -0.5 55,274 - Sama_0054 0.22 -1.1 55,277 + Sama_0054 0.23 -0.2 55,277 + Sama_0054 0.23 -2.0 55,277 + Sama_0054 0.23 -1.2 55,277 + Sama_0054 0.23 +0.6 55,278 - Sama_0054 0.23 +1.7 55,278 - Sama_0054 0.23 -0.4 55,278 - Sama_0054 0.23 +0.3 55,278 - Sama_0054 0.23 +0.1 55,278 - Sama_0054 0.23 -0.1 55,284 - Sama_0054 0.24 -0.3 55,284 - Sama_0054 0.24 -1.1 55,297 + Sama_0054 0.26 -0.2 55,297 + Sama_0054 0.26 +0.5 55,297 + Sama_0054 0.26 -0.8 55,297 + Sama_0054 0.26 +0.1 55,298 - Sama_0054 0.26 +0.4 55,298 - Sama_0054 0.26 +0.4 55,298 - Sama_0054 0.26 -2.1 55,298 - Sama_0054 0.26 -0.1 55,363 + Sama_0054 0.38 -0.3 55,363 + Sama_0054 0.38 -0.8 55,363 + Sama_0054 0.38 -0.9 55,363 + Sama_0054 0.38 +0.8 55,363 + Sama_0054 0.38 -0.5 55,363 + Sama_0054 0.38 -0.6 55,363 + Sama_0054 0.38 +0.7 55,364 - Sama_0054 0.38 -0.8 55,364 - Sama_0054 0.38 +0.1 55,364 - Sama_0054 0.38 +0.6 55,364 - Sama_0054 0.38 -0.2 55,364 - Sama_0054 0.38 -0.8 55,364 - Sama_0054 0.38 +0.4 55,366 + Sama_0054 0.39 -0.1 55,366 + Sama_0054 0.39 -0.3 55,366 + Sama_0054 0.39 +1.7 55,367 - Sama_0054 0.39 +0.2 55,380 + Sama_0054 0.41 -0.6 55,380 + Sama_0054 0.41 -1.5 55,380 + Sama_0054 0.41 -2.0 55,380 + Sama_0054 0.41 +0.5 55,380 + Sama_0054 0.41 +0.2 55,380 + Sama_0054 0.41 -0.5 55,380 + Sama_0054 0.41 -0.4 55,380 + Sama_0054 0.41 -0.4 55,380 + Sama_0054 0.41 +1.0 55,380 + Sama_0054 0.41 -0.3 55,380 + Sama_0054 0.41 -1.2 55,381 - Sama_0054 0.42 -0.1 55,381 - Sama_0054 0.42 -0.3 55,381 - Sama_0054 0.42 +0.3 55,381 - Sama_0054 0.42 -0.2 55,381 - Sama_0054 0.42 +0.2 55,381 - Sama_0054 0.42 +1.4 55,381 - Sama_0054 0.42 +0.1 55,384 + Sama_0054 0.42 -1.3 55,384 + Sama_0054 0.42 +0.1 55,384 + Sama_0054 0.42 +0.2 55,384 + Sama_0054 0.42 -0.3 55,384 + Sama_0054 0.42 +0.0 55,384 + Sama_0054 0.42 +0.9 55,384 + Sama_0054 0.42 -0.4 55,384 + Sama_0054 0.42 -0.4 55,384 + Sama_0054 0.42 -2.9 55,384 + Sama_0054 0.42 -0.5 55,384 + Sama_0054 0.42 -0.5 55,385 - Sama_0054 0.42 -0.7 55,385 - Sama_0054 0.42 +2.0 55,385 - Sama_0054 0.42 +0.4 55,385 - Sama_0054 0.42 +1.1 55,385 - Sama_0054 0.42 -0.9 55,385 - Sama_0054 0.42 +0.7 55,385 - Sama_0054 0.42 -0.9 55,385 - Sama_0054 0.42 -0.3 55,385 - Sama_0054 0.42 +0.3 55,385 - Sama_0054 0.42 +0.7 55,385 - Sama_0054 0.42 -0.3 55,385 - Sama_0054 0.42 -0.8 55,385 - Sama_0054 0.42 +0.2 55,385 - Sama_0054 0.42 +0.3 55,386 - Sama_0054 0.42 -0.9 55,391 - Sama_0054 0.43 -1.3 55,422 + Sama_0054 0.49 -0.3 55,422 + Sama_0054 0.49 +0.5 55,422 + Sama_0054 0.49 -1.2 55,422 + Sama_0054 0.49 +0.2 55,422 + Sama_0054 0.49 +0.0 55,422 + Sama_0054 0.49 +2.5 55,422 + Sama_0054 0.49 -1.3 55,423 - Sama_0054 0.49 -0.3 55,423 - Sama_0054 0.49 +0.9 55,423 - Sama_0054 0.49 -0.7 55,455 + Sama_0054 0.55 +0.6 55,455 + Sama_0054 0.55 +0.1 55,456 - Sama_0054 0.55 +0.4 55,456 - Sama_0054 0.55 -0.8 55,456 - Sama_0054 0.55 +1.9 55,491 + Sama_0054 0.62 +0.7 55,492 - Sama_0054 0.62 -1.3 55,504 + Sama_0054 0.64 +0.3 55,504 + Sama_0054 0.64 +0.3 55,505 - Sama_0054 0.64 +1.2 55,536 + Sama_0054 0.70 -0.3 55,536 + Sama_0054 0.70 +0.2 55,537 - Sama_0054 0.70 -0.7 55,542 + Sama_0054 0.71 -0.4 55,543 - Sama_0054 0.71 -1.0 55,639 + Sama_0054 0.89 -0.8 55,639 + Sama_0054 0.89 +0.6 55,639 + Sama_0054 0.89 -0.8 55,639 + Sama_0054 0.89 +0.2 55,639 + Sama_0054 0.89 +0.5 55,639 + Sama_0054 0.89 -0.9 55,639 + Sama_0054 0.89 +0.4 55,639 + Sama_0054 0.89 -0.3 55,639 + Sama_0054 0.89 +0.2 55,639 + Sama_0054 0.89 -0.6 55,639 + Sama_0054 0.89 -0.0 55,639 + Sama_0054 0.89 +0.0 55,639 + Sama_0054 0.89 -0.9 55,639 + Sama_0054 0.89 +1.0 55,639 + Sama_0054 0.89 -0.5 55,639 + Sama_0054 0.89 -0.0 55,639 + Sama_0054 0.89 +1.0 55,639 + Sama_0054 0.89 -0.4 55,639 + Sama_0054 0.89 -0.4 55,639 + Sama_0054 0.89 +0.6 55,640 - Sama_0054 0.89 -0.3 55,640 - Sama_0054 0.89 -0.6 55,640 - Sama_0054 0.89 -2.0 55,640 - Sama_0054 0.89 +0.7 55,640 - Sama_0054 0.89 +0.1 55,640 - Sama_0054 0.89 -0.4 55,640 - Sama_0054 0.89 -0.5 55,640 - Sama_0054 0.89 +0.6 55,640 - Sama_0054 0.89 +0.2 55,640 - Sama_0054 0.89 +0.4 55,640 - Sama_0054 0.89 -1.1 55,640 - Sama_0054 0.89 +0.8 55,640 - Sama_0054 0.89 +0.3 55,640 - Sama_0054 0.89 -0.6 55,640 - Sama_0054 0.89 -0.1 55,640 - Sama_0054 0.89 +0.2 55,640 - Sama_0054 0.89 -0.9 55,640 - Sama_0054 0.89 +0.3 55,640 - Sama_0054 0.89 +0.1 55,640 - Sama_0054 0.89 -0.2 55,640 - Sama_0054 0.89 +0.7 55,640 - Sama_0054 0.89 -0.2 55,640 - Sama_0054 0.89 -0.3 55,640 - Sama_0054 0.89 -0.3 55,640 - Sama_0054 0.89 +0.6 55,640 - Sama_0054 0.89 -0.7 55,640 - Sama_0054 0.89 +1.4 55,640 - Sama_0054 0.89 -0.3 55,640 - Sama_0054 0.89 +0.3 55,640 - Sama_0054 0.89 -0.1 55,641 + Sama_0054 0.89 +0.5 55,641 + Sama_0054 0.89 -0.9 55,642 - Sama_0054 0.89 +0.0 55,642 - Sama_0054 0.89 -0.3 55,642 - Sama_0054 0.89 +0.4 55,642 - Sama_0054 0.89 +0.5 55,643 + Sama_0054 0.89 -0.4 55,643 + Sama_0054 0.89 -1.2 55,643 + Sama_0054 0.89 +0.0 55,643 + Sama_0054 0.89 +0.1 55,643 + Sama_0054 0.89 +0.1 55,643 + Sama_0054 0.89 +0.1 55,644 - Sama_0054 0.89 +0.8 55,644 - Sama_0054 0.89 -0.2 55,644 - Sama_0054 0.89 +0.4 55,644 - Sama_0054 0.89 +0.4 55,644 - Sama_0054 0.89 -0.7 55,644 - Sama_0054 0.89 +0.3 55,644 - Sama_0054 0.89 +0.1 55,644 - Sama_0054 0.89 -1.3 55,644 - Sama_0054 0.89 +0.2 55,662 + +1.0 55,663 - -1.0 55,663 - +0.6 55,663 - +0.5 55,678 - +0.2 55,678 - -1.4 55,678 - -0.4 55,679 + +0.7 55,679 + -1.0 55,679 + -0.2 55,679 + -0.8 55,680 - -0.8 55,680 - +0.4 55,702 - -0.2 55,713 + +0.3 55,714 - +1.1 55,734 + +0.5 55,734 + -0.1 55,735 - +0.4 55,735 - -0.6 55,736 + -0.5 55,736 + -0.3 55,736 + +0.3 55,736 + -0.4 55,736 + -0.2 55,737 - +1.2 55,737 - -0.8 55,737 - -0.1 55,737 - -1.6 55,737 - -0.4 55,737 - +0.9 55,802 - -0.3 55,836 - -2.1 55,836 - +0.1 55,836 - +0.8 55,836 - -0.9 55,838 - +0.2 55,838 - -0.5 56,580 + Sama_R0001 0.28 -0.7 56,580 + Sama_R0001 0.28 -1.2 56,615 + Sama_R0001 0.30 -0.7 56,615 + Sama_R0001 0.30 -0.1 56,615 + Sama_R0001 0.30 -1.1 56,618 + Sama_R0001 0.30 -0.5 56,618 + Sama_R0001 0.30 -0.7 56,618 + Sama_R0001 0.30 -0.7 56,618 + Sama_R0001 0.30 +0.5
Or see this region's nucleotide sequence