Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10000

Experiment: m.b. Sisomicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Sisomicin 0.005 mg/ml
1,032,040	+		PGA1_c09980	0.58	-1.1
1,032,061	+		PGA1_c09980	0.59	-1.1
1,032,076	+		PGA1_c09980	0.61	-1.8
1,032,095	+		PGA1_c09980	0.62	-1.3
1,032,113	+		PGA1_c09980	0.64	+1.5
1,032,123	+		PGA1_c09980	0.65	+0.8
1,032,149	+		PGA1_c09980	0.67	-1.0
1,032,163	-		PGA1_c09980	0.68	-1.0
1,032,180	+		PGA1_c09980	0.69	-1.3
1,032,180	+		PGA1_c09980	0.69	-0.4
1,032,188	-		PGA1_c09980	0.70	+0.2
1,032,279	-		PGA1_c09980	0.78	-1.6
1,032,325	+		PGA1_c09980	0.81	-0.6
1,032,333	-		PGA1_c09980	0.82	+0.4
1,032,387	+		PGA1_c09980	0.87	+1.0
1,032,387	+		PGA1_c09980	0.87	-0.1
1,032,390	-		PGA1_c09980	0.87	+0.7
1,032,390	-		PGA1_c09980	0.87	-0.6
1,032,405	-		PGA1_c09980	0.88	-0.3
1,032,487	+				+1.0
1,032,487	+				+1.0
1,032,543	+				-0.1
1,032,543	+				-2.8
1,032,545	+				-0.2
1,032,680	+		PGA1_c09990	0.10	-2.2
1,032,735	+		PGA1_c09990	0.24	-0.2
1,032,744	-		PGA1_c09990	0.26	+1.0
1,032,744	-		PGA1_c09990	0.26	-1.1
1,032,744	-		PGA1_c09990	0.26	+0.5
1,032,745	+		PGA1_c09990	0.27	+1.5
1,032,750	+		PGA1_c09990	0.28	+0.0
1,032,779	+		PGA1_c09990	0.35	-1.9
1,032,959	+		PGA1_c09990	0.80	-0.2
1,032,991	-		PGA1_c09990	0.88	-0.5
1,032,991	-		PGA1_c09990	0.88	-0.6
1,033,033	-				-1.1
1,033,040	+				+1.2
1,033,040	+				-0.6
1,033,089	-				-0.2
1,033,144	-		PGA1_c10000	0.14	-1.5
1,033,165	+		PGA1_c10000	0.17	-0.4
1,033,197	+		PGA1_c10000	0.21	+0.6
1,033,207	+		PGA1_c10000	0.23	-0.3
1,033,281	+		PGA1_c10000	0.32	-2.4
1,033,283	-		PGA1_c10000	0.33	-1.6
1,033,321	-		PGA1_c10000	0.38	+1.0
1,033,335	-		PGA1_c10000	0.40	-0.6
1,033,378	-		PGA1_c10000	0.45	-0.9
1,033,406	+		PGA1_c10000	0.49	-0.9
1,033,438	+		PGA1_c10000	0.53	-1.0
1,033,514	-		PGA1_c10000	0.63	+3.0
1,033,526	-		PGA1_c10000	0.65	-2.4
1,033,526	-		PGA1_c10000	0.65	+0.8
1,033,526	-		PGA1_c10000	0.65	+0.3
1,033,526	-		PGA1_c10000	0.65	-1.5
1,033,561	-		PGA1_c10000	0.70	-2.1
1,033,561	-		PGA1_c10000	0.70	-0.4
1,033,561	-		PGA1_c10000	0.70	-0.2
1,033,561	-		PGA1_c10000	0.70	+0.0
1,033,623	+		PGA1_c10000	0.78	-0.1
1,033,669	+		PGA1_c10000	0.84	+2.5
1,033,677	-		PGA1_c10000	0.85	-0.6
1,033,713	+		PGA1_c10000	0.90	-0.2
1,033,725	+				+0.8
1,033,799	-				+1.0
1,033,888	-				-0.2
1,033,907	+				-0.3
1,033,921	-				+1.8
1,033,956	-				-0.1
1,034,018	-				+0.5
1,034,071	+				-0.7
1,034,071	+				+1.0
1,034,079	-				-1.0
1,034,127	-				-0.2
1,034,132	-		PGA1_c10010	0.10	-2.5
1,034,181	-		PGA1_c10010	0.15	+0.5
1,034,198	+		PGA1_c10010	0.17	-0.0
1,034,198	+		PGA1_c10010	0.17	+1.3
1,034,200	-		PGA1_c10010	0.17	-0.5
1,034,232	+		PGA1_c10010	0.21	-0.0
1,034,244	+		PGA1_c10010	0.22	-0.2
1,034,258	+		PGA1_c10010	0.23	-1.7
1,034,266	-		PGA1_c10010	0.24	-3.4
1,034,266	-		PGA1_c10010	0.24	-0.3
1,034,266	-		PGA1_c10010	0.24	+0.0
1,034,311	+		PGA1_c10010	0.29	-1.3
1,034,311	+		PGA1_c10010	0.29	+0.4
1,034,319	-		PGA1_c10010	0.30	-0.2
1,034,319	-		PGA1_c10010	0.30	+0.2
1,034,365	+		PGA1_c10010	0.34	-0.3
1,034,398	+		PGA1_c10010	0.38	+0.4
1,034,400	+		PGA1_c10010	0.38	+0.4
1,034,404	+		PGA1_c10010	0.39	-0.4
1,034,404	+		PGA1_c10010	0.39	-0.0
1,034,412	-		PGA1_c10010	0.39	-3.1
1,034,433	+		PGA1_c10010	0.42	+0.4
1,034,436	+		PGA1_c10010	0.42	-0.6
1,034,444	-		PGA1_c10010	0.43	+2.0
1,034,468	+		PGA1_c10010	0.45	+0.8
1,034,507	-		PGA1_c10010	0.49	-1.5
1,034,507	-		PGA1_c10010	0.49	-0.5
1,034,547	+		PGA1_c10010	0.54	+0.4
1,034,623	+		PGA1_c10010	0.62	-1.0
1,034,623	+		PGA1_c10010	0.62	+1.3
1,034,623	+		PGA1_c10010	0.62	+2.1
1,034,623	+		PGA1_c10010	0.62	-0.7
1,034,623	+		PGA1_c10010	0.62	-1.2
1,034,623	+		PGA1_c10010	0.62	-2.3
1,034,623	+		PGA1_c10010	0.62	+0.3
1,034,623	+		PGA1_c10010	0.62	+0.3
1,034,631	-		PGA1_c10010	0.62	+0.0
1,034,631	-		PGA1_c10010	0.62	+1.4
1,034,709	-		PGA1_c10010	0.71	-0.5
1,034,709	-		PGA1_c10010	0.71	-0.8
1,034,709	-		PGA1_c10010	0.71	+1.1
1,034,709	-		PGA1_c10010	0.71	+0.8
1,034,709	-		PGA1_c10010	0.71	-0.0
1,034,709	-		PGA1_c10010	0.71	+0.4
1,034,709	-		PGA1_c10010	0.71	+0.8
1,034,710	-		PGA1_c10010	0.71	-2.0
1,034,723	-		PGA1_c10010	0.72	+0.7
1,034,742	-		PGA1_c10010	0.74	-0.0
1,034,747	-		PGA1_c10010	0.75	+0.9
1,034,756	-		PGA1_c10010	0.75	-0.4
1,034,761	-		PGA1_c10010	0.76	-0.7
1,034,763	+		PGA1_c10010	0.76	-1.7
1,034,782	-		PGA1_c10010	0.78	-0.8