Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0909

Experiment: Cephalothin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0908 and Psest_0909 overlap by 1 nucleotidesPsest_0909 and Psest_0910 are separated by 51 nucleotidesPsest_0910 and Psest_0911 are separated by 94 nucleotides Psest_0908: Psest_0908 - hypothetical protein, at 986,202 to 986,606 _0908 Psest_0909: Psest_0909 - hypothetical protein, at 986,606 to 986,920 _0909 Psest_0910: Psest_0910 - hypothetical protein, at 986,972 to 987,343 _0910 Psest_0911: Psest_0911 - Inhibitor of the KinA pathway to sporulation, predicted exonuclease, at 987,438 to 988,091 _0911 Position (kb) 986 987Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 985.741 kb on + strandat 985.741 kb on + strandat 985.742 kb on - strandat 985.742 kb on - strandat 985.742 kb on - strandat 985.742 kb on - strandat 985.758 kb on + strandat 985.759 kb on - strandat 985.759 kb on - strandat 985.759 kb on - strandat 985.759 kb on - strandat 985.780 kb on + strandat 985.846 kb on - strandat 985.848 kb on - strandat 985.978 kb on - strandat 986.017 kb on - strandat 986.021 kb on - strandat 986.082 kb on - strandat 986.122 kb on + strandat 986.129 kb on + strandat 986.130 kb on - strandat 986.179 kb on + strandat 986.179 kb on + strandat 986.180 kb on - strandat 986.190 kb on + strandat 986.221 kb on + strandat 986.226 kb on + strandat 986.226 kb on + strandat 986.227 kb on - strandat 986.424 kb on + strand, within Psest_0908at 986.424 kb on + strand, within Psest_0908at 986.424 kb on + strand, within Psest_0908at 986.424 kb on + strand, within Psest_0908at 986.424 kb on + strand, within Psest_0908at 986.425 kb on - strand, within Psest_0908at 986.442 kb on + strand, within Psest_0908at 986.442 kb on + strand, within Psest_0908at 986.442 kb on + strand, within Psest_0908at 986.443 kb on - strand, within Psest_0908at 986.484 kb on - strand, within Psest_0908at 986.484 kb on - strand, within Psest_0908at 986.484 kb on - strand, within Psest_0908at 986.534 kb on + strand, within Psest_0908at 986.534 kb on + strand, within Psest_0908at 986.534 kb on + strand, within Psest_0908at 986.541 kb on + strand, within Psest_0908at 986.542 kb on - strand, within Psest_0908at 986.542 kb on - strand, within Psest_0908at 986.542 kb on - strand, within Psest_0908at 986.585 kb on + strandat 986.586 kb on - strandat 986.620 kb on - strandat 986.637 kb on + strandat 986.637 kb on + strandat 986.637 kb on + strandat 986.680 kb on + strand, within Psest_0909at 986.681 kb on - strand, within Psest_0909at 986.681 kb on - strand, within Psest_0909at 986.814 kb on - strand, within Psest_0909at 986.835 kb on + strand, within Psest_0909at 986.835 kb on + strand, within Psest_0909at 986.835 kb on + strand, within Psest_0909at 986.835 kb on + strand, within Psest_0909at 986.835 kb on + strand, within Psest_0909at 986.836 kb on - strand, within Psest_0909at 986.836 kb on - strand, within Psest_0909at 986.836 kb on - strand, within Psest_0909at 986.836 kb on - strand, within Psest_0909at 986.836 kb on - strand, within Psest_0909at 986.836 kb on - strand, within Psest_0909at 986.836 kb on - strand, within Psest_0909at 986.873 kb on + strand, within Psest_0909at 986.873 kb on + strand, within Psest_0909at 986.873 kb on + strand, within Psest_0909at 986.874 kb on - strand, within Psest_0909at 986.888 kb on - strand, within Psest_0909at 986.904 kb on - strandat 987.012 kb on + strand, within Psest_0910at 987.013 kb on - strand, within Psest_0910at 987.013 kb on - strand, within Psest_0910at 987.041 kb on - strand, within Psest_0910at 987.083 kb on + strand, within Psest_0910at 987.140 kb on + strand, within Psest_0910at 987.140 kb on + strand, within Psest_0910at 987.140 kb on + strand, within Psest_0910at 987.141 kb on - strand, within Psest_0910at 987.141 kb on - strand, within Psest_0910at 987.183 kb on + strand, within Psest_0910at 987.183 kb on + strand, within Psest_0910at 987.184 kb on - strand, within Psest_0910at 987.184 kb on - strand, within Psest_0910at 987.242 kb on + strand, within Psest_0910at 987.242 kb on + strand, within Psest_0910at 987.242 kb on + strand, within Psest_0910at 987.242 kb on + strand, within Psest_0910at 987.242 kb on + strand, within Psest_0910at 987.242 kb on + strand, within Psest_0910at 987.242 kb on + strand, within Psest_0910at 987.242 kb on + strand, within Psest_0910at 987.243 kb on - strand, within Psest_0910at 987.243 kb on - strand, within Psest_0910at 987.243 kb on - strand, within Psest_0910at 987.243 kb on - strand, within Psest_0910at 987.243 kb on - strand, within Psest_0910at 987.315 kb on + strandat 987.362 kb on - strandat 987.362 kb on - strandat 987.364 kb on + strandat 987.364 kb on + strandat 987.365 kb on - strandat 987.367 kb on - strandat 987.405 kb on + strandat 987.406 kb on - strandat 987.406 kb on - strandat 987.406 kb on - strandat 987.445 kb on + strandat 987.503 kb on - strandat 987.537 kb on + strand, within Psest_0911at 987.577 kb on + strand, within Psest_0911at 987.577 kb on + strand, within Psest_0911at 987.577 kb on + strand, within Psest_0911at 987.577 kb on + strand, within Psest_0911at 987.578 kb on - strand, within Psest_0911at 987.578 kb on - strand, within Psest_0911at 987.703 kb on + strand, within Psest_0911at 987.733 kb on + strand, within Psest_0911at 987.733 kb on + strand, within Psest_0911at 987.733 kb on + strand, within Psest_0911at 987.734 kb on - strand, within Psest_0911at 987.734 kb on - strand, within Psest_0911at 987.775 kb on + strand, within Psest_0911at 987.776 kb on - strand, within Psest_0911at 987.776 kb on - strand, within Psest_0911at 987.776 kb on - strand, within Psest_0911at 987.776 kb on - strand, within Psest_0911at 987.776 kb on - strand, within Psest_0911at 987.812 kb on + strand, within Psest_0911at 987.813 kb on - strand, within Psest_0911at 987.847 kb on - strand, within Psest_0911at 987.889 kb on + strand, within Psest_0911at 987.889 kb on + strand, within Psest_0911at 987.890 kb on - strand, within Psest_0911at 987.895 kb on + strand, within Psest_0911at 987.895 kb on + strand, within Psest_0911at 987.895 kb on + strand, within Psest_0911at 987.895 kb on + strand, within Psest_0911at 987.895 kb on + strand, within Psest_0911at 987.895 kb on + strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.896 kb on - strand, within Psest_0911at 987.917 kb on + strand, within Psest_0911

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml
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985,741 + -0.5
985,741 + -2.0
985,742 - -0.6
985,742 - -3.3
985,742 - +2.4
985,742 - -0.3
985,758 + -1.8
985,759 - -0.3
985,759 - -0.1
985,759 - +0.6
985,759 - -1.4
985,780 + -1.8
985,846 - +0.9
985,848 - -0.2
985,978 - -1.1
986,017 - -1.9
986,021 - -0.7
986,082 - -0.5
986,122 + -0.5
986,129 + -1.2
986,130 - -0.5
986,179 + -2.0
986,179 + -0.6
986,180 - -1.0
986,190 + +0.8
986,221 + +0.7
986,226 + -1.2
986,226 + -1.5
986,227 - -1.9
986,424 + Psest_0908 0.55 +1.2
986,424 + Psest_0908 0.55 +0.8
986,424 + Psest_0908 0.55 -0.0
986,424 + Psest_0908 0.55 -0.3
986,424 + Psest_0908 0.55 +0.3
986,425 - Psest_0908 0.55 -1.5
986,442 + Psest_0908 0.59 -2.1
986,442 + Psest_0908 0.59 -1.9
986,442 + Psest_0908 0.59 -0.5
986,443 - Psest_0908 0.60 +0.3
986,484 - Psest_0908 0.70 -0.9
986,484 - Psest_0908 0.70 -0.4
986,484 - Psest_0908 0.70 -0.5
986,534 + Psest_0908 0.82 -0.4
986,534 + Psest_0908 0.82 +1.5
986,534 + Psest_0908 0.82 -1.0
986,541 + Psest_0908 0.84 +0.1
986,542 - Psest_0908 0.84 -1.1
986,542 - Psest_0908 0.84 -0.0
986,542 - Psest_0908 0.84 -1.3
986,585 + -0.5
986,586 - +0.2
986,620 - +0.0
986,637 + -0.1
986,637 + -1.0
986,637 + -1.0
986,680 + Psest_0909 0.23 -1.6
986,681 - Psest_0909 0.24 -1.8
986,681 - Psest_0909 0.24 -2.4
986,814 - Psest_0909 0.66 -0.0
986,835 + Psest_0909 0.73 +1.8
986,835 + Psest_0909 0.73 -0.5
986,835 + Psest_0909 0.73 -1.2
986,835 + Psest_0909 0.73 -2.1
986,835 + Psest_0909 0.73 -1.7
986,836 - Psest_0909 0.73 +0.1
986,836 - Psest_0909 0.73 -2.1
986,836 - Psest_0909 0.73 -0.6
986,836 - Psest_0909 0.73 -0.6
986,836 - Psest_0909 0.73 -1.3
986,836 - Psest_0909 0.73 -1.5
986,836 - Psest_0909 0.73 -0.3
986,873 + Psest_0909 0.85 -2.8
986,873 + Psest_0909 0.85 -0.3
986,873 + Psest_0909 0.85 -0.5
986,874 - Psest_0909 0.85 -3.3
986,888 - Psest_0909 0.90 -0.2
986,904 - -0.4
987,012 + Psest_0910 0.11 +0.2
987,013 - Psest_0910 0.11 -1.4
987,013 - Psest_0910 0.11 -1.5
987,041 - Psest_0910 0.19 -1.2
987,083 + Psest_0910 0.30 -0.2
987,140 + Psest_0910 0.45 +0.1
987,140 + Psest_0910 0.45 -0.4
987,140 + Psest_0910 0.45 +0.9
987,141 - Psest_0910 0.45 +0.2
987,141 - Psest_0910 0.45 -1.0
987,183 + Psest_0910 0.57 -1.8
987,183 + Psest_0910 0.57 -1.4
987,184 - Psest_0910 0.57 -1.3
987,184 - Psest_0910 0.57 -2.3
987,242 + Psest_0910 0.73 +0.3
987,242 + Psest_0910 0.73 -0.9
987,242 + Psest_0910 0.73 +0.3
987,242 + Psest_0910 0.73 -1.5
987,242 + Psest_0910 0.73 -1.1
987,242 + Psest_0910 0.73 -2.2
987,242 + Psest_0910 0.73 -1.9
987,242 + Psest_0910 0.73 -0.4
987,243 - Psest_0910 0.73 -0.8
987,243 - Psest_0910 0.73 -0.5
987,243 - Psest_0910 0.73 -0.5
987,243 - Psest_0910 0.73 -0.4
987,243 - Psest_0910 0.73 -0.2
987,315 + -3.2
987,362 - +0.0
987,362 - -0.7
987,364 + -2.0
987,364 + -1.8
987,365 - -0.4
987,367 - -1.0
987,405 + -0.9
987,406 - -0.2
987,406 - -1.3
987,406 - -2.7
987,445 + -0.7
987,503 - +0.1
987,537 + Psest_0911 0.15 -0.4
987,577 + Psest_0911 0.21 -0.6
987,577 + Psest_0911 0.21 -0.4
987,577 + Psest_0911 0.21 -1.7
987,577 + Psest_0911 0.21 -0.6
987,578 - Psest_0911 0.21 -1.0
987,578 - Psest_0911 0.21 -0.4
987,703 + Psest_0911 0.41 +0.3
987,733 + Psest_0911 0.45 +1.2
987,733 + Psest_0911 0.45 -0.7
987,733 + Psest_0911 0.45 -2.0
987,734 - Psest_0911 0.45 +0.8
987,734 - Psest_0911 0.45 -2.0
987,775 + Psest_0911 0.52 -2.3
987,776 - Psest_0911 0.52 -0.8
987,776 - Psest_0911 0.52 +0.4
987,776 - Psest_0911 0.52 -2.1
987,776 - Psest_0911 0.52 +0.9
987,776 - Psest_0911 0.52 -1.0
987,812 + Psest_0911 0.57 +0.3
987,813 - Psest_0911 0.57 -0.7
987,847 - Psest_0911 0.63 +0.7
987,889 + Psest_0911 0.69 +0.3
987,889 + Psest_0911 0.69 -1.3
987,890 - Psest_0911 0.69 +0.4
987,895 + Psest_0911 0.70 -2.5
987,895 + Psest_0911 0.70 +0.7
987,895 + Psest_0911 0.70 -0.6
987,895 + Psest_0911 0.70 -1.5
987,895 + Psest_0911 0.70 +1.2
987,895 + Psest_0911 0.70 +1.8
987,896 - Psest_0911 0.70 -2.8
987,896 - Psest_0911 0.70 -2.0
987,896 - Psest_0911 0.70 -1.5
987,896 - Psest_0911 0.70 -2.7
987,896 - Psest_0911 0.70 -1.4
987,896 - Psest_0911 0.70 -0.9
987,896 - Psest_0911 0.70 -2.7
987,896 - Psest_0911 0.70 -1.6
987,896 - Psest_0911 0.70 -1.1
987,896 - Psest_0911 0.70 -2.2
987,896 - Psest_0911 0.70 -0.5
987,896 - Psest_0911 0.70 -1.9
987,896 - Psest_0911 0.70 -2.9
987,896 - Psest_0911 0.70 -1.5
987,896 - Psest_0911 0.70 -1.6
987,896 - Psest_0911 0.70 -0.1
987,917 + Psest_0911 0.73 -1.1

Or see this region's nucleotide sequence