Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0839

Experiment: Cephalothin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0837 and Psest_0838 are separated by 180 nucleotidesPsest_0838 and Psest_0839 are separated by 96 nucleotidesPsest_0839 and Psest_0840 are separated by 231 nucleotides Psest_0837: Psest_0837 - Putative lipid carrier protein, at 908,171 to 908,665 _0837 Psest_0838: Psest_0838 - Uncharacterized conserved protein, at 908,846 to 909,232 _0838 Psest_0839: Psest_0839 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 909,329 to 910,006 _0839 Psest_0840: Psest_0840 - anaerobic ribonucleoside-triphosphate reductase, at 910,238 to 912,256 _0840 Position (kb) 909 910 911Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 908.764 kb on + strandat 908.764 kb on + strandat 908.764 kb on + strandat 908.764 kb on + strandat 908.764 kb on + strandat 908.764 kb on + strandat 908.764 kb on + strandat 908.764 kb on + strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.842 kb on + strandat 908.842 kb on + strandat 908.842 kb on + strandat 908.842 kb on + strandat 908.842 kb on + strandat 908.842 kb on + strandat 908.843 kb on - strandat 908.843 kb on - strandat 908.843 kb on - strandat 908.843 kb on - strandat 908.843 kb on - strandat 908.843 kb on - strandat 908.843 kb on - strandat 909.202 kb on - strandat 909.721 kb on - strand, within Psest_0839at 909.846 kb on + strand, within Psest_0839at 909.846 kb on + strand, within Psest_0839at 909.847 kb on - strand, within Psest_0839at 909.847 kb on - strand, within Psest_0839at 909.847 kb on - strand, within Psest_0839at 909.847 kb on - strand, within Psest_0839at 909.847 kb on - strand, within Psest_0839at 909.847 kb on - strand, within Psest_0839at 909.919 kb on + strand, within Psest_0839at 909.919 kb on + strand, within Psest_0839at 909.919 kb on + strand, within Psest_0839at 909.919 kb on + strand, within Psest_0839at 909.919 kb on + strand, within Psest_0839at 909.919 kb on + strand, within Psest_0839at 909.920 kb on - strand, within Psest_0839at 909.920 kb on - strand, within Psest_0839at 910.035 kb on + strandat 910.050 kb on + strandat 910.051 kb on - strandat 910.051 kb on - strandat 910.188 kb on + strandat 910.189 kb on - strandat 910.189 kb on - strandat 910.215 kb on + strandat 910.215 kb on + strandat 910.215 kb on + strandat 910.215 kb on + strandat 910.216 kb on - strandat 910.219 kb on + strandat 910.219 kb on + strandat 910.219 kb on + strandat 910.219 kb on + strandat 910.220 kb on - strandat 910.502 kb on + strand, within Psest_0840at 910.502 kb on + strand, within Psest_0840at 910.503 kb on - strand, within Psest_0840at 910.503 kb on - strand, within Psest_0840at 910.503 kb on - strand, within Psest_0840at 910.503 kb on - strand, within Psest_0840at 910.573 kb on + strand, within Psest_0840at 910.573 kb on + strand, within Psest_0840at 910.574 kb on - strand, within Psest_0840at 910.584 kb on - strand, within Psest_0840at 910.584 kb on - strand, within Psest_0840at 910.584 kb on - strand, within Psest_0840at 910.673 kb on - strand, within Psest_0840at 910.673 kb on - strand, within Psest_0840at 910.682 kb on + strand, within Psest_0840at 910.682 kb on + strand, within Psest_0840at 910.682 kb on + strand, within Psest_0840at 910.682 kb on + strand, within Psest_0840at 910.682 kb on + strand, within Psest_0840at 910.683 kb on - strand, within Psest_0840at 910.683 kb on - strand, within Psest_0840at 910.700 kb on + strand, within Psest_0840at 910.701 kb on - strand, within Psest_0840at 910.744 kb on + strand, within Psest_0840at 910.946 kb on - strand, within Psest_0840at 910.949 kb on + strand, within Psest_0840at 910.949 kb on + strand, within Psest_0840at 910.949 kb on + strand, within Psest_0840at 910.949 kb on + strand, within Psest_0840at 910.949 kb on + strand, within Psest_0840at 910.950 kb on - strand, within Psest_0840at 910.950 kb on - strand, within Psest_0840at 910.950 kb on - strand, within Psest_0840at 910.950 kb on - strand, within Psest_0840

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml
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908,764 + +0.5
908,764 + +0.1
908,764 + -1.0
908,764 + +0.0
908,764 + +0.8
908,764 + +0.1
908,764 + -2.0
908,764 + +0.6
908,765 - -1.1
908,765 - -1.1
908,765 - -0.6
908,765 - +0.3
908,765 - +0.2
908,765 - +0.3
908,765 - -0.1
908,765 - -1.4
908,765 - +0.1
908,765 - -0.1
908,842 + -0.3
908,842 + -0.5
908,842 + -0.9
908,842 + +0.6
908,842 + -1.6
908,842 + -0.3
908,843 - -1.1
908,843 - -1.7
908,843 - +0.1
908,843 - -1.5
908,843 - -1.9
908,843 - -0.6
908,843 - +0.5
909,202 - -0.1
909,721 - Psest_0839 0.58 -1.6
909,846 + Psest_0839 0.76 +0.8
909,846 + Psest_0839 0.76 -0.1
909,847 - Psest_0839 0.76 -1.2
909,847 - Psest_0839 0.76 -0.6
909,847 - Psest_0839 0.76 -0.9
909,847 - Psest_0839 0.76 -0.8
909,847 - Psest_0839 0.76 -0.3
909,847 - Psest_0839 0.76 -2.8
909,919 + Psest_0839 0.87 -1.1
909,919 + Psest_0839 0.87 +0.1
909,919 + Psest_0839 0.87 -1.0
909,919 + Psest_0839 0.87 -0.9
909,919 + Psest_0839 0.87 +2.7
909,919 + Psest_0839 0.87 -0.1
909,920 - Psest_0839 0.87 -1.3
909,920 - Psest_0839 0.87 -2.0
910,035 + +0.7
910,050 + -0.9
910,051 - -1.2
910,051 - -0.2
910,188 + +1.7
910,189 - -0.4
910,189 - +0.7
910,215 + -0.3
910,215 + -0.3
910,215 + +1.3
910,215 + -1.1
910,216 - -0.6
910,219 + -0.7
910,219 + +0.6
910,219 + -0.4
910,219 + -0.3
910,220 - -0.6
910,502 + Psest_0840 0.13 -0.8
910,502 + Psest_0840 0.13 -0.6
910,503 - Psest_0840 0.13 +1.3
910,503 - Psest_0840 0.13 +0.3
910,503 - Psest_0840 0.13 +0.7
910,503 - Psest_0840 0.13 -0.8
910,573 + Psest_0840 0.17 +0.7
910,573 + Psest_0840 0.17 +0.4
910,574 - Psest_0840 0.17 +0.3
910,584 - Psest_0840 0.17 +0.1
910,584 - Psest_0840 0.17 +0.8
910,584 - Psest_0840 0.17 +0.7
910,673 - Psest_0840 0.22 +0.1
910,673 - Psest_0840 0.22 +0.1
910,682 + Psest_0840 0.22 -0.4
910,682 + Psest_0840 0.22 -0.6
910,682 + Psest_0840 0.22 +0.6
910,682 + Psest_0840 0.22 +0.4
910,682 + Psest_0840 0.22 -0.6
910,683 - Psest_0840 0.22 +0.8
910,683 - Psest_0840 0.22 -2.9
910,700 + Psest_0840 0.23 +0.5
910,701 - Psest_0840 0.23 -1.7
910,744 + Psest_0840 0.25 +2.1
910,946 - Psest_0840 0.35 -0.1
910,949 + Psest_0840 0.35 -0.7
910,949 + Psest_0840 0.35 +0.1
910,949 + Psest_0840 0.35 -1.9
910,949 + Psest_0840 0.35 -0.6
910,949 + Psest_0840 0.35 -1.1
910,950 - Psest_0840 0.35 +2.5
910,950 - Psest_0840 0.35 +0.0
910,950 - Psest_0840 0.35 -0.6
910,950 - Psest_0840 0.35 +2.5

Or see this region's nucleotide sequence