Experiment: Cephalothin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0801 and Psest_0802 are separated by 10 nucleotides Psest_0802 and Psest_0803 are separated by 70 nucleotides Psest_0803 and Psest_0804 are separated by 8 nucleotides
Psest_0801: Psest_0801 - CBS-domain-containing membrane protein, at 875,814 to 876,950
_0801
Psest_0802: Psest_0802 - Transcriptional regulator, at 876,961 to 877,821
_0802
Psest_0803: Psest_0803 - prepilin-type N-terminal cleavage/methylation domain, at 877,892 to 878,419
_0803
Psest_0804: Psest_0804 - hypothetical protein, at 878,428 to 881,445
_0804
Position (kb) 876
877
878 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 876.303 kb on + strand, within Psest_0801 at 876.303 kb on + strand, within Psest_0801 at 876.303 kb on + strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.444 kb on + strand, within Psest_0801 at 876.445 kb on - strand, within Psest_0801 at 876.445 kb on - strand, within Psest_0801 at 876.445 kb on - strand, within Psest_0801 at 876.558 kb on + strand, within Psest_0801 at 876.558 kb on + strand, within Psest_0801 at 876.559 kb on - strand, within Psest_0801 at 876.819 kb on + strand, within Psest_0801 at 876.819 kb on + strand, within Psest_0801 at 876.819 kb on + strand, within Psest_0801 at 876.820 kb on - strand, within Psest_0801 at 876.820 kb on - strand, within Psest_0801 at 876.972 kb on - strand at 877.073 kb on + strand, within Psest_0802 at 877.074 kb on - strand, within Psest_0802 at 877.074 kb on - strand, within Psest_0802 at 877.082 kb on + strand, within Psest_0802 at 877.160 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.296 kb on - strand, within Psest_0802 at 877.296 kb on - strand, within Psest_0802 at 877.296 kb on - strand, within Psest_0802 at 877.374 kb on - strand, within Psest_0802 at 877.495 kb on + strand, within Psest_0802 at 877.622 kb on + strand, within Psest_0802 at 877.622 kb on + strand, within Psest_0802 at 877.623 kb on - strand, within Psest_0802 at 877.743 kb on + strand at 877.743 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.883 kb on + strand at 877.884 kb on - strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.888 kb on - strand at 877.888 kb on - strand at 878.016 kb on - strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.298 kb on + strand, within Psest_0803 at 878.393 kb on + strand at 878.393 kb on + strand at 878.429 kb on + strand at 878.430 kb on - strand at 878.430 kb on - strand at 878.430 kb on - strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.485 kb on - strand at 878.619 kb on - strand at 878.635 kb on + strand at 878.639 kb on + strand at 878.639 kb on + strand at 878.639 kb on + strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.650 kb on - strand at 878.651 kb on + strand at 878.651 kb on + strand at 878.651 kb on + strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml remove 876,303 + Psest_0801 0.43 +0.4 876,303 + Psest_0801 0.43 +1.1 876,303 + Psest_0801 0.43 -0.5 876,304 - Psest_0801 0.43 -0.9 876,304 - Psest_0801 0.43 -0.5 876,304 - Psest_0801 0.43 +0.5 876,304 - Psest_0801 0.43 -0.1 876,304 - Psest_0801 0.43 +1.3 876,304 - Psest_0801 0.43 -0.8 876,444 + Psest_0801 0.55 -1.5 876,445 - Psest_0801 0.55 -0.6 876,445 - Psest_0801 0.55 +0.7 876,445 - Psest_0801 0.55 -2.6 876,558 + Psest_0801 0.65 -0.7 876,558 + Psest_0801 0.65 -2.5 876,559 - Psest_0801 0.66 -2.9 876,819 + Psest_0801 0.88 +0.3 876,819 + Psest_0801 0.88 -0.1 876,819 + Psest_0801 0.88 +0.4 876,820 - Psest_0801 0.88 -0.4 876,820 - Psest_0801 0.88 -2.4 876,972 - +0.4 877,073 + Psest_0802 0.13 +0.1 877,074 - Psest_0802 0.13 -0.2 877,074 - Psest_0802 0.13 +0.9 877,082 + Psest_0802 0.14 +0.2 877,160 + Psest_0802 0.23 -0.5 877,218 + Psest_0802 0.30 +1.0 877,218 + Psest_0802 0.30 +2.1 877,218 + Psest_0802 0.30 +1.1 877,218 + Psest_0802 0.30 +1.0 877,289 + Psest_0802 0.38 +1.0 877,289 + Psest_0802 0.38 +1.0 877,289 + Psest_0802 0.38 -0.2 877,289 + Psest_0802 0.38 +1.0 877,289 + Psest_0802 0.38 +0.6 877,289 + Psest_0802 0.38 -1.5 877,290 - Psest_0802 0.38 +1.3 877,290 - Psest_0802 0.38 -1.0 877,290 - Psest_0802 0.38 +1.0 877,290 - Psest_0802 0.38 +1.3 877,290 - Psest_0802 0.38 -0.3 877,290 - Psest_0802 0.38 -0.3 877,290 - Psest_0802 0.38 +0.3 877,290 - Psest_0802 0.38 -2.2 877,290 - Psest_0802 0.38 +1.3 877,290 - Psest_0802 0.38 +0.7 877,295 + Psest_0802 0.39 +0.7 877,295 + Psest_0802 0.39 +0.9 877,295 + Psest_0802 0.39 +0.4 877,295 + Psest_0802 0.39 +3.0 877,295 + Psest_0802 0.39 +1.1 877,295 + Psest_0802 0.39 +0.1 877,296 - Psest_0802 0.39 -1.1 877,296 - Psest_0802 0.39 -1.4 877,296 - Psest_0802 0.39 +0.1 877,374 - Psest_0802 0.48 -0.2 877,495 + Psest_0802 0.62 -0.7 877,622 + Psest_0802 0.77 -1.0 877,622 + Psest_0802 0.77 +1.5 877,623 - Psest_0802 0.77 -0.6 877,743 + +0.4 877,743 + +0.8 877,855 + +0.8 877,855 + +0.1 877,855 + -2.0 877,855 + +0.8 877,856 - -1.3 877,856 - -1.5 877,856 - -0.7 877,856 - -1.7 877,883 + +0.5 877,884 - -0.1 877,887 + +0.8 877,887 + +0.8 877,887 + +1.4 877,887 + +1.3 877,887 + -3.1 877,888 - -2.3 877,888 - -1.0 878,016 - Psest_0803 0.23 -1.6 878,262 + Psest_0803 0.70 -2.5 878,262 + Psest_0803 0.70 -0.5 878,262 + Psest_0803 0.70 -0.5 878,262 + Psest_0803 0.70 -0.3 878,262 + Psest_0803 0.70 +0.3 878,262 + Psest_0803 0.70 -0.6 878,262 + Psest_0803 0.70 -1.8 878,263 - Psest_0803 0.70 -2.7 878,263 - Psest_0803 0.70 +0.5 878,263 - Psest_0803 0.70 -2.7 878,263 - Psest_0803 0.70 -0.8 878,298 + Psest_0803 0.77 +0.9 878,393 + +1.1 878,393 + +0.9 878,429 + +0.5 878,430 - -0.0 878,430 - +1.3 878,430 - -1.4 878,484 + -1.6 878,484 + -0.4 878,484 + -1.0 878,484 + -1.7 878,485 - +0.6 878,619 - +0.7 878,635 + -0.8 878,639 + -1.3 878,639 + -0.6 878,639 + -0.1 878,640 - +0.9 878,640 - +1.2 878,640 - -0.1 878,640 - -0.6 878,640 - +0.2 878,640 - -0.8 878,640 - +0.5 878,640 - +0.7 878,650 - -0.0 878,651 + +0.7 878,651 + -0.2 878,651 + +0.5 878,652 - -1.1 878,652 - +0.7 878,652 - -0.1 878,652 - -1.1 878,652 - -0.2 878,784 - Psest_0804 0.12 -1.4 878,784 - Psest_0804 0.12 -0.2 878,784 - Psest_0804 0.12 -1.1 878,784 - Psest_0804 0.12 -0.5
Or see this region's nucleotide sequence