Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0777

Experiment: Cephalothin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0775 and Psest_0776 are separated by 64 nucleotidesPsest_0776 and Psest_0777 are separated by 4 nucleotidesPsest_0777 and Psest_0778 are separated by 84 nucleotides Psest_0775: Psest_0775 - Catalase, at 844,182 to 845,720 _0775 Psest_0776: Psest_0776 - FOG: Ankyrin repeat, at 845,785 to 846,339 _0776 Psest_0777: Psest_0777 - cyanate hydratase, at 846,344 to 846,793 _0777 Psest_0778: Psest_0778 - Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin, at 846,878 to 847,639 _0778 Position (kb) 846 847Strain fitness (log2 ratio) -2 -1 0 1 2 3at 845.391 kb on + strand, within Psest_0775at 845.391 kb on + strand, within Psest_0775at 845.391 kb on + strand, within Psest_0775at 845.391 kb on + strand, within Psest_0775at 845.392 kb on - strand, within Psest_0775at 845.392 kb on - strand, within Psest_0775at 845.392 kb on - strand, within Psest_0775at 845.625 kb on + strandat 845.625 kb on + strandat 845.625 kb on + strandat 845.625 kb on + strandat 845.626 kb on - strandat 845.643 kb on + strandat 845.644 kb on - strandat 845.718 kb on + strandat 845.718 kb on + strandat 845.769 kb on + strandat 845.784 kb on + strandat 845.784 kb on + strandat 845.784 kb on + strandat 845.784 kb on + strandat 845.784 kb on + strandat 845.785 kb on - strandat 845.906 kb on - strand, within Psest_0776at 845.998 kb on + strand, within Psest_0776at 845.999 kb on - strand, within Psest_0776at 846.022 kb on + strand, within Psest_0776at 846.023 kb on - strand, within Psest_0776at 846.023 kb on - strand, within Psest_0776at 846.023 kb on - strand, within Psest_0776at 846.211 kb on + strand, within Psest_0776at 846.211 kb on + strand, within Psest_0776at 846.212 kb on + strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.348 kb on + strandat 846.348 kb on + strandat 846.349 kb on - strandat 846.519 kb on + strand, within Psest_0777at 846.528 kb on + strand, within Psest_0777at 846.573 kb on + strand, within Psest_0777at 846.574 kb on - strand, within Psest_0777at 846.574 kb on - strand, within Psest_0777at 846.743 kb on + strand, within Psest_0777at 846.743 kb on + strand, within Psest_0777at 846.743 kb on + strand, within Psest_0777at 846.743 kb on + strand, within Psest_0777at 846.743 kb on + strand, within Psest_0777at 846.744 kb on - strand, within Psest_0777at 846.744 kb on - strand, within Psest_0777at 846.885 kb on + strandat 846.885 kb on + strandat 846.973 kb on - strand, within Psest_0778at 846.973 kb on - strand, within Psest_0778at 847.020 kb on - strand, within Psest_0778at 847.230 kb on + strand, within Psest_0778at 847.230 kb on + strand, within Psest_0778at 847.230 kb on + strand, within Psest_0778at 847.231 kb on - strand, within Psest_0778at 847.375 kb on + strand, within Psest_0778at 847.671 kb on + strandat 847.671 kb on + strandat 847.671 kb on + strandat 847.671 kb on + strandat 847.671 kb on + strandat 847.672 kb on - strandat 847.672 kb on - strandat 847.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml
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845,391 + Psest_0775 0.79 +1.1
845,391 + Psest_0775 0.79 +1.5
845,391 + Psest_0775 0.79 -0.1
845,391 + Psest_0775 0.79 +0.0
845,392 - Psest_0775 0.79 -0.1
845,392 - Psest_0775 0.79 +0.9
845,392 - Psest_0775 0.79 +0.1
845,625 + +1.3
845,625 + +1.7
845,625 + +0.4
845,625 + +1.0
845,626 - +0.4
845,643 + +1.1
845,644 - -0.5
845,718 + -0.6
845,718 + +2.7
845,769 + -0.9
845,784 + -2.0
845,784 + -1.3
845,784 + +0.9
845,784 + +2.1
845,784 + -0.7
845,785 - +1.1
845,906 - Psest_0776 0.22 +1.5
845,998 + Psest_0776 0.38 -0.7
845,999 - Psest_0776 0.39 -0.6
846,022 + Psest_0776 0.43 -0.8
846,023 - Psest_0776 0.43 +0.0
846,023 - Psest_0776 0.43 -0.0
846,023 - Psest_0776 0.43 +0.5
846,211 + Psest_0776 0.77 +0.7
846,211 + Psest_0776 0.77 +1.5
846,212 + Psest_0776 0.77 +0.2
846,212 - Psest_0776 0.77 +1.0
846,212 - Psest_0776 0.77 -0.3
846,212 - Psest_0776 0.77 -0.1
846,212 - Psest_0776 0.77 +0.1
846,212 - Psest_0776 0.77 +0.4
846,348 + -0.6
846,348 + +0.3
846,349 - +1.3
846,519 + Psest_0777 0.39 +0.5
846,528 + Psest_0777 0.41 +0.3
846,573 + Psest_0777 0.51 +1.5
846,574 - Psest_0777 0.51 +1.5
846,574 - Psest_0777 0.51 +0.8
846,743 + Psest_0777 0.89 +1.0
846,743 + Psest_0777 0.89 +0.6
846,743 + Psest_0777 0.89 -0.2
846,743 + Psest_0777 0.89 +0.7
846,743 + Psest_0777 0.89 +0.5
846,744 - Psest_0777 0.89 +1.8
846,744 - Psest_0777 0.89 -0.4
846,885 + +0.7
846,885 + -0.9
846,973 - Psest_0778 0.12 -1.5
846,973 - Psest_0778 0.12 +0.4
847,020 - Psest_0778 0.19 -1.0
847,230 + Psest_0778 0.46 +0.8
847,230 + Psest_0778 0.46 +1.0
847,230 + Psest_0778 0.46 +1.5
847,231 - Psest_0778 0.46 +0.6
847,375 + Psest_0778 0.65 +2.7
847,671 + +3.1
847,671 + +1.3
847,671 + +2.7
847,671 + +3.5
847,671 + +1.0
847,672 - -0.0
847,672 - -0.3
847,672 - +0.3

Or see this region's nucleotide sequence