Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07540 and PGA1_c07550 are separated by 182 nucleotides PGA1_c07550 and PGA1_c07560 are separated by 13 nucleotides PGA1_c07560 and PGA1_c07570 are separated by 99 nucleotides
PGA1_c07540: PGA1_c07540 - transcription factor carD-like protein, at 778,976 to 779,488
_c07540
PGA1_c07550: PGA1_c07550 - ion channel domain-containing protein, at 779,671 to 780,444
_c07550
PGA1_c07560: PGA1_c07560 - putative cobalamin-5-phosphate synthase, at 780,458 to 781,216
_c07560
PGA1_c07570: PGA1_c07570 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase CobT, at 781,316 to 782,332
_c07570
Position (kb) 779
780
781 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 778.738 kb on + strand at 779.452 kb on + strand at 779.503 kb on + strand at 779.561 kb on - strand at 779.598 kb on + strand at 779.606 kb on - strand at 779.606 kb on - strand at 779.612 kb on + strand at 779.612 kb on + strand at 779.612 kb on + strand at 779.620 kb on - strand at 779.620 kb on - strand at 779.620 kb on - strand at 779.620 kb on - strand at 779.620 kb on - strand at 779.666 kb on + strand at 779.743 kb on + strand at 779.799 kb on - strand, within PGA1_c07550 at 779.807 kb on + strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.815 kb on - strand, within PGA1_c07550 at 779.821 kb on + strand, within PGA1_c07550 at 779.871 kb on + strand, within PGA1_c07550 at 779.901 kb on + strand, within PGA1_c07550 at 779.901 kb on + strand, within PGA1_c07550 at 779.967 kb on + strand, within PGA1_c07550 at 779.975 kb on - strand, within PGA1_c07550 at 779.982 kb on - strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.002 kb on + strand, within PGA1_c07550 at 780.007 kb on + strand, within PGA1_c07550 at 780.010 kb on - strand, within PGA1_c07550 at 780.010 kb on - strand, within PGA1_c07550 at 780.010 kb on - strand, within PGA1_c07550 at 780.010 kb on - strand, within PGA1_c07550 at 780.092 kb on + strand, within PGA1_c07550 at 780.094 kb on - strand, within PGA1_c07550 at 780.184 kb on - strand, within PGA1_c07550 at 780.213 kb on - strand, within PGA1_c07550 at 780.218 kb on - strand, within PGA1_c07550 at 780.218 kb on - strand, within PGA1_c07550 at 780.287 kb on + strand, within PGA1_c07550 at 780.347 kb on + strand, within PGA1_c07550 at 780.407 kb on - strand at 780.459 kb on - strand at 780.462 kb on - strand at 780.469 kb on - strand at 780.477 kb on + strand at 781.231 kb on - strand at 781.235 kb on - strand at 781.241 kb on - strand at 781.241 kb on - strand at 781.242 kb on - strand at 781.242 kb on - strand at 781.244 kb on + strand at 781.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 778,738 + +1.0 779,452 + +1.8 779,503 + +3.1 779,561 - -0.9 779,598 + -1.2 779,606 - +1.7 779,606 - -1.8 779,612 + -0.2 779,612 + -0.2 779,612 + -1.5 779,620 - -0.8 779,620 - -1.3 779,620 - +0.9 779,620 - +1.5 779,620 - -0.2 779,666 + +0.3 779,743 + +0.2 779,799 - PGA1_c07550 0.17 +1.2 779,807 + PGA1_c07550 0.18 -0.4 779,815 - PGA1_c07550 0.19 -1.0 779,815 - PGA1_c07550 0.19 +0.8 779,815 - PGA1_c07550 0.19 +0.1 779,815 - PGA1_c07550 0.19 -0.7 779,815 - PGA1_c07550 0.19 +2.4 779,815 - PGA1_c07550 0.19 -0.3 779,821 + PGA1_c07550 0.19 -2.0 779,871 + PGA1_c07550 0.26 -1.4 779,901 + PGA1_c07550 0.30 +0.7 779,901 + PGA1_c07550 0.30 -0.9 779,967 + PGA1_c07550 0.38 +0.9 779,975 - PGA1_c07550 0.39 -0.5 779,982 - PGA1_c07550 0.40 -2.0 780,002 + PGA1_c07550 0.43 -1.2 780,002 + PGA1_c07550 0.43 -0.1 780,002 + PGA1_c07550 0.43 -0.1 780,002 + PGA1_c07550 0.43 -1.3 780,002 + PGA1_c07550 0.43 +0.6 780,002 + PGA1_c07550 0.43 -2.3 780,007 + PGA1_c07550 0.43 -0.2 780,010 - PGA1_c07550 0.44 -1.0 780,010 - PGA1_c07550 0.44 -1.0 780,010 - PGA1_c07550 0.44 -1.2 780,010 - PGA1_c07550 0.44 +1.0 780,092 + PGA1_c07550 0.54 -0.2 780,094 - PGA1_c07550 0.55 -1.8 780,184 - PGA1_c07550 0.66 -0.5 780,213 - PGA1_c07550 0.70 +0.0 780,218 - PGA1_c07550 0.71 -1.0 780,218 - PGA1_c07550 0.71 -2.5 780,287 + PGA1_c07550 0.80 -2.7 780,347 + PGA1_c07550 0.87 -0.5 780,407 - -1.1 780,459 - -0.2 780,462 - -0.4 780,469 - -0.5 780,477 + +0.0 781,231 - -0.2 781,235 - +0.7 781,241 - -0.1 781,241 - +0.7 781,242 - -0.1 781,242 - +1.0 781,244 + +0.5 781,293 + +1.4
Or see this region's nucleotide sequence