Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07410 and PGA1_c07420 are separated by 150 nucleotides PGA1_c07420 and PGA1_c07430 are separated by 134 nucleotides PGA1_c07430 and PGA1_c07440 are separated by 18 nucleotides
PGA1_c07410: PGA1_c07410 - binding protein dependent transport system permease, at 764,531 to 765,478
_c07410
PGA1_c07420: PGA1_c07420 - extracellular solute-binding protein, at 765,629 to 766,879
_c07420
PGA1_c07430: PGA1_c07430 - putative transcriptional regulator, IclR family, at 767,014 to 767,805
_c07430
PGA1_c07440: PGA1_c07440 - ABC transporter, ATP binding protein, at 767,824 to 768,885
_c07440
Position (kb) 765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 764.630 kb on + strand, within PGA1_c07410 at 764.632 kb on - strand, within PGA1_c07410 at 764.632 kb on - strand, within PGA1_c07410 at 764.705 kb on + strand, within PGA1_c07410 at 764.739 kb on - strand, within PGA1_c07410 at 764.840 kb on + strand, within PGA1_c07410 at 764.853 kb on + strand, within PGA1_c07410 at 764.853 kb on + strand, within PGA1_c07410 at 764.853 kb on + strand, within PGA1_c07410 at 764.861 kb on - strand, within PGA1_c07410 at 764.861 kb on - strand, within PGA1_c07410 at 764.863 kb on + strand, within PGA1_c07410 at 764.863 kb on + strand, within PGA1_c07410 at 764.878 kb on + strand, within PGA1_c07410 at 764.893 kb on + strand, within PGA1_c07410 at 764.922 kb on + strand, within PGA1_c07410 at 764.969 kb on + strand, within PGA1_c07410 at 764.977 kb on - strand, within PGA1_c07410 at 764.981 kb on + strand, within PGA1_c07410 at 764.986 kb on + strand, within PGA1_c07410 at 764.986 kb on + strand, within PGA1_c07410 at 764.986 kb on + strand, within PGA1_c07410 at 764.991 kb on + strand, within PGA1_c07410 at 764.991 kb on + strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.999 kb on - strand, within PGA1_c07410 at 764.999 kb on - strand, within PGA1_c07410 at 765.000 kb on - strand, within PGA1_c07410 at 765.002 kb on + strand, within PGA1_c07410 at 765.005 kb on - strand, within PGA1_c07410 at 765.010 kb on - strand, within PGA1_c07410 at 765.010 kb on - strand, within PGA1_c07410 at 765.020 kb on - strand, within PGA1_c07410 at 765.037 kb on + strand, within PGA1_c07410 at 765.112 kb on + strand, within PGA1_c07410 at 765.120 kb on - strand, within PGA1_c07410 at 765.123 kb on + strand, within PGA1_c07410 at 765.131 kb on - strand, within PGA1_c07410 at 765.147 kb on + strand, within PGA1_c07410 at 765.155 kb on - strand, within PGA1_c07410 at 765.155 kb on - strand, within PGA1_c07410 at 765.160 kb on - strand, within PGA1_c07410 at 765.162 kb on + strand, within PGA1_c07410 at 765.182 kb on + strand, within PGA1_c07410 at 765.211 kb on - strand, within PGA1_c07410 at 765.211 kb on - strand, within PGA1_c07410 at 765.225 kb on - strand, within PGA1_c07410 at 765.261 kb on + strand, within PGA1_c07410 at 765.283 kb on + strand, within PGA1_c07410 at 765.286 kb on - strand, within PGA1_c07410 at 765.291 kb on - strand, within PGA1_c07410 at 765.291 kb on - strand, within PGA1_c07410 at 765.307 kb on + strand, within PGA1_c07410 at 765.307 kb on + strand, within PGA1_c07410 at 765.307 kb on + strand, within PGA1_c07410 at 765.315 kb on - strand, within PGA1_c07410 at 765.315 kb on - strand, within PGA1_c07410 at 765.315 kb on - strand, within PGA1_c07410 at 765.353 kb on + strand, within PGA1_c07410 at 765.390 kb on - strand at 765.462 kb on + strand at 765.472 kb on - strand at 765.478 kb on + strand at 765.530 kb on - strand at 765.591 kb on - strand at 765.591 kb on - strand at 765.630 kb on + strand at 765.638 kb on - strand at 765.638 kb on - strand at 765.670 kb on - strand at 765.673 kb on + strand at 765.673 kb on + strand at 765.681 kb on - strand at 765.681 kb on - strand at 765.701 kb on - strand at 765.711 kb on - strand at 765.718 kb on - strand at 765.771 kb on - strand, within PGA1_c07420 at 765.804 kb on - strand, within PGA1_c07420 at 765.838 kb on + strand, within PGA1_c07420 at 765.843 kb on + strand, within PGA1_c07420 at 765.843 kb on + strand, within PGA1_c07420 at 765.854 kb on + strand, within PGA1_c07420 at 765.873 kb on - strand, within PGA1_c07420 at 765.922 kb on - strand, within PGA1_c07420 at 765.936 kb on + strand, within PGA1_c07420 at 765.944 kb on - strand, within PGA1_c07420 at 765.944 kb on - strand, within PGA1_c07420 at 766.046 kb on + strand, within PGA1_c07420 at 766.051 kb on + strand, within PGA1_c07420 at 766.051 kb on + strand, within PGA1_c07420 at 766.124 kb on + strand, within PGA1_c07420 at 766.151 kb on - strand, within PGA1_c07420 at 766.157 kb on - strand, within PGA1_c07420 at 766.194 kb on - strand, within PGA1_c07420 at 766.222 kb on + strand, within PGA1_c07420 at 766.250 kb on - strand, within PGA1_c07420 at 766.255 kb on - strand, within PGA1_c07420 at 766.265 kb on + strand, within PGA1_c07420 at 766.314 kb on + strand, within PGA1_c07420 at 766.374 kb on - strand, within PGA1_c07420 at 766.387 kb on + strand, within PGA1_c07420 at 766.405 kb on - strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.423 kb on + strand, within PGA1_c07420 at 766.435 kb on + strand, within PGA1_c07420 at 766.443 kb on - strand, within PGA1_c07420 at 766.459 kb on + strand, within PGA1_c07420 at 766.466 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.474 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.515 kb on + strand, within PGA1_c07420 at 766.520 kb on + strand, within PGA1_c07420 at 766.548 kb on + strand, within PGA1_c07420 at 766.595 kb on - strand, within PGA1_c07420 at 766.667 kb on + strand, within PGA1_c07420 at 766.690 kb on + strand, within PGA1_c07420 at 766.762 kb on + strand at 766.767 kb on + strand at 766.767 kb on + strand at 766.768 kb on - strand at 766.816 kb on + strand at 766.826 kb on + strand at 766.826 kb on + strand at 766.831 kb on + strand at 766.831 kb on + strand at 766.834 kb on - strand at 766.834 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.983 kb on - strand at 767.000 kb on + strand at 767.011 kb on + strand at 767.140 kb on - strand, within PGA1_c07430 at 767.162 kb on + strand, within PGA1_c07430 at 767.292 kb on - strand, within PGA1_c07430 at 767.315 kb on + strand, within PGA1_c07430 at 767.357 kb on - strand, within PGA1_c07430 at 767.412 kb on + strand, within PGA1_c07430 at 767.432 kb on + strand, within PGA1_c07430 at 767.482 kb on + strand, within PGA1_c07430 at 767.533 kb on + strand, within PGA1_c07430 at 767.540 kb on + strand, within PGA1_c07430 at 767.541 kb on - strand, within PGA1_c07430 at 767.559 kb on - strand, within PGA1_c07430 at 767.607 kb on - strand, within PGA1_c07430 at 767.657 kb on - strand, within PGA1_c07430 at 767.756 kb on + strand at 767.779 kb on + strand at 767.814 kb on - strand at 767.841 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 764,630 + PGA1_c07410 0.10 -0.5 764,632 - PGA1_c07410 0.11 -0.0 764,632 - PGA1_c07410 0.11 +0.2 764,705 + PGA1_c07410 0.18 -1.0 764,739 - PGA1_c07410 0.22 -1.2 764,840 + PGA1_c07410 0.33 -3.4 764,853 + PGA1_c07410 0.34 +0.5 764,853 + PGA1_c07410 0.34 -2.7 764,853 + PGA1_c07410 0.34 -2.3 764,861 - PGA1_c07410 0.35 +1.0 764,861 - PGA1_c07410 0.35 -1.0 764,863 + PGA1_c07410 0.35 +1.5 764,863 + PGA1_c07410 0.35 +0.7 764,878 + PGA1_c07410 0.37 -0.2 764,893 + PGA1_c07410 0.38 -1.9 764,922 + PGA1_c07410 0.41 +0.5 764,969 + PGA1_c07410 0.46 -0.3 764,977 - PGA1_c07410 0.47 -0.5 764,981 + PGA1_c07410 0.47 -2.0 764,986 + PGA1_c07410 0.48 -0.2 764,986 + PGA1_c07410 0.48 +0.3 764,986 + PGA1_c07410 0.48 -0.4 764,991 + PGA1_c07410 0.49 +1.6 764,991 + PGA1_c07410 0.49 +0.1 764,994 - PGA1_c07410 0.49 +0.3 764,994 - PGA1_c07410 0.49 -0.5 764,994 - PGA1_c07410 0.49 +0.2 764,994 - PGA1_c07410 0.49 +0.1 764,994 - PGA1_c07410 0.49 -0.7 764,994 - PGA1_c07410 0.49 +0.7 764,999 - PGA1_c07410 0.49 -1.3 764,999 - PGA1_c07410 0.49 +1.7 765,000 - PGA1_c07410 0.49 -1.5 765,002 + PGA1_c07410 0.50 -2.9 765,005 - PGA1_c07410 0.50 -1.2 765,010 - PGA1_c07410 0.51 +0.7 765,010 - PGA1_c07410 0.51 -0.4 765,020 - PGA1_c07410 0.52 -1.4 765,037 + PGA1_c07410 0.53 -1.6 765,112 + PGA1_c07410 0.61 -3.0 765,120 - PGA1_c07410 0.62 -0.7 765,123 + PGA1_c07410 0.62 +0.6 765,131 - PGA1_c07410 0.63 +0.1 765,147 + PGA1_c07410 0.65 -0.4 765,155 - PGA1_c07410 0.66 +0.9 765,155 - PGA1_c07410 0.66 -1.6 765,160 - PGA1_c07410 0.66 -1.8 765,162 + PGA1_c07410 0.67 -0.1 765,182 + PGA1_c07410 0.69 -0.5 765,211 - PGA1_c07410 0.72 +0.6 765,211 - PGA1_c07410 0.72 -1.5 765,225 - PGA1_c07410 0.73 +0.0 765,261 + PGA1_c07410 0.77 -1.8 765,283 + PGA1_c07410 0.79 -0.5 765,286 - PGA1_c07410 0.80 -1.9 765,291 - PGA1_c07410 0.80 -0.5 765,291 - PGA1_c07410 0.80 +1.4 765,307 + PGA1_c07410 0.82 -0.9 765,307 + PGA1_c07410 0.82 +0.5 765,307 + PGA1_c07410 0.82 -0.5 765,315 - PGA1_c07410 0.83 -2.0 765,315 - PGA1_c07410 0.83 -1.2 765,315 - PGA1_c07410 0.83 +0.1 765,353 + PGA1_c07410 0.87 -0.9 765,390 - +1.3 765,462 + -1.4 765,472 - -0.7 765,478 + -0.7 765,530 - -1.7 765,591 - +0.6 765,591 - +1.3 765,630 + +1.0 765,638 - +0.6 765,638 - -2.1 765,670 - -0.2 765,673 + -0.7 765,673 + +0.3 765,681 - -1.3 765,681 - +0.0 765,701 - +0.3 765,711 - +2.5 765,718 - +1.0 765,771 - PGA1_c07420 0.11 -0.5 765,804 - PGA1_c07420 0.14 -1.4 765,838 + PGA1_c07420 0.17 +0.3 765,843 + PGA1_c07420 0.17 -1.3 765,843 + PGA1_c07420 0.17 -0.9 765,854 + PGA1_c07420 0.18 +0.1 765,873 - PGA1_c07420 0.20 +0.0 765,922 - PGA1_c07420 0.23 +1.0 765,936 + PGA1_c07420 0.25 +0.0 765,944 - PGA1_c07420 0.25 +0.6 765,944 - PGA1_c07420 0.25 +1.1 766,046 + PGA1_c07420 0.33 +0.1 766,051 + PGA1_c07420 0.34 -0.9 766,051 + PGA1_c07420 0.34 +0.5 766,124 + PGA1_c07420 0.40 -0.6 766,151 - PGA1_c07420 0.42 -1.7 766,157 - PGA1_c07420 0.42 -0.1 766,194 - PGA1_c07420 0.45 -0.5 766,222 + PGA1_c07420 0.47 -0.4 766,250 - PGA1_c07420 0.50 -1.0 766,255 - PGA1_c07420 0.50 -2.0 766,265 + PGA1_c07420 0.51 +0.2 766,314 + PGA1_c07420 0.55 -1.8 766,374 - PGA1_c07420 0.60 +0.7 766,387 + PGA1_c07420 0.61 +1.9 766,405 - PGA1_c07420 0.62 -0.1 766,408 + PGA1_c07420 0.62 -0.5 766,408 + PGA1_c07420 0.62 +0.1 766,408 + PGA1_c07420 0.62 +0.3 766,416 - PGA1_c07420 0.63 +2.5 766,416 - PGA1_c07420 0.63 -0.0 766,416 - PGA1_c07420 0.63 -2.8 766,423 + PGA1_c07420 0.63 +0.4 766,435 + PGA1_c07420 0.64 -1.3 766,443 - PGA1_c07420 0.65 -1.5 766,459 + PGA1_c07420 0.66 +0.6 766,466 + PGA1_c07420 0.67 -0.7 766,467 + PGA1_c07420 0.67 +0.9 766,467 + PGA1_c07420 0.67 -1.0 766,467 + PGA1_c07420 0.67 +1.4 766,467 + PGA1_c07420 0.67 -1.3 766,467 + PGA1_c07420 0.67 -2.9 766,467 + PGA1_c07420 0.67 +0.5 766,467 + PGA1_c07420 0.67 -1.4 766,467 + PGA1_c07420 0.67 +1.1 766,467 + PGA1_c07420 0.67 +0.5 766,474 - PGA1_c07420 0.68 +2.1 766,475 - PGA1_c07420 0.68 +0.0 766,475 - PGA1_c07420 0.68 +0.7 766,475 - PGA1_c07420 0.68 -0.1 766,475 - PGA1_c07420 0.68 -0.7 766,475 - PGA1_c07420 0.68 +1.4 766,475 - PGA1_c07420 0.68 +0.9 766,515 + PGA1_c07420 0.71 +0.3 766,520 + PGA1_c07420 0.71 -0.9 766,548 + PGA1_c07420 0.73 -0.7 766,595 - PGA1_c07420 0.77 +0.2 766,667 + PGA1_c07420 0.83 +0.5 766,690 + PGA1_c07420 0.85 -0.5 766,762 + -1.5 766,767 + -0.2 766,767 + +0.2 766,768 - +0.4 766,816 + +0.6 766,826 + -2.0 766,826 + +0.0 766,831 + +0.4 766,831 + +0.5 766,834 - -0.1 766,834 - +0.8 766,839 - -0.4 766,839 - -2.7 766,839 - -2.0 766,839 - -0.5 766,839 - -0.0 766,839 - -1.1 766,983 - +1.3 767,000 + -2.4 767,011 + +0.6 767,140 - PGA1_c07430 0.16 -2.3 767,162 + PGA1_c07430 0.19 +2.2 767,292 - PGA1_c07430 0.35 -3.4 767,315 + PGA1_c07430 0.38 +2.0 767,357 - PGA1_c07430 0.43 -0.5 767,412 + PGA1_c07430 0.50 +1.9 767,432 + PGA1_c07430 0.53 +0.7 767,482 + PGA1_c07430 0.59 +0.9 767,533 + PGA1_c07430 0.66 +1.1 767,540 + PGA1_c07430 0.66 +3.2 767,541 - PGA1_c07430 0.67 -1.0 767,559 - PGA1_c07430 0.69 -0.5 767,607 - PGA1_c07430 0.75 -0.6 767,657 - PGA1_c07430 0.81 -0.2 767,756 + +0.3 767,779 + +0.5 767,814 - +0.7 767,841 + +0.6
Or see this region's nucleotide sequence