Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06290 and PGA1_c06300 are separated by 118 nucleotides PGA1_c06300 and PGA1_c06310 are separated by 4 nucleotides PGA1_c06310 and PGA1_c06320 overlap by 4 nucleotides
PGA1_c06290: PGA1_c06290 - cytochrome c oxidase subunit 3, at 643,763 to 644,578
_c06290
PGA1_c06300: PGA1_c06300 - Uncharacterized conserved protein, at 644,697 to 645,371
_c06300
PGA1_c06310: PGA1_c06310 - threonine synthase ThrC, at 645,376 to 646,764
_c06310
PGA1_c06320: PGA1_c06320 - peptidase, M16 family, at 646,761 to 648,023
_c06320
Position (kb) 645
646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 644.593 kb on - strand at 644.598 kb on + strand at 644.605 kb on + strand at 644.606 kb on - strand at 644.655 kb on + strand at 644.655 kb on + strand at 646.799 kb on - strand at 646.823 kb on + strand at 647.029 kb on + strand, within PGA1_c06320 at 647.133 kb on - strand, within PGA1_c06320 at 647.279 kb on - strand, within PGA1_c06320 at 647.282 kb on + strand, within PGA1_c06320 at 647.383 kb on - strand, within PGA1_c06320 at 647.426 kb on + strand, within PGA1_c06320 at 647.521 kb on - strand, within PGA1_c06320 at 647.521 kb on - strand, within PGA1_c06320 at 647.541 kb on + strand, within PGA1_c06320 at 647.600 kb on + strand, within PGA1_c06320 at 647.600 kb on + strand, within PGA1_c06320 at 647.608 kb on - strand, within PGA1_c06320 at 647.621 kb on + strand, within PGA1_c06320 at 647.624 kb on - strand, within PGA1_c06320 at 647.630 kb on - strand, within PGA1_c06320 at 647.659 kb on + strand, within PGA1_c06320
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 644,593 - -0.3 644,598 + +1.1 644,605 + +1.9 644,606 - -0.8 644,655 + +0.9 644,655 + -2.6 646,799 - -0.7 646,823 + -2.1 647,029 + PGA1_c06320 0.21 -1.6 647,133 - PGA1_c06320 0.29 -1.9 647,279 - PGA1_c06320 0.41 -3.1 647,282 + PGA1_c06320 0.41 -0.3 647,383 - PGA1_c06320 0.49 +0.3 647,426 + PGA1_c06320 0.53 -1.1 647,521 - PGA1_c06320 0.60 -1.6 647,521 - PGA1_c06320 0.60 -0.9 647,541 + PGA1_c06320 0.62 -0.3 647,600 + PGA1_c06320 0.66 -2.8 647,600 + PGA1_c06320 0.66 -0.5 647,608 - PGA1_c06320 0.67 -3.5 647,621 + PGA1_c06320 0.68 -2.2 647,624 - PGA1_c06320 0.68 -1.9 647,630 - PGA1_c06320 0.69 -0.5 647,659 + PGA1_c06320 0.71 -1.4
Or see this region's nucleotide sequence