Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06270

Experiment: m.b. Sisomicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06260 and PGA1_c06270 are separated by 1 nucleotidesPGA1_c06270 and PGA1_c06280 overlap by 1 nucleotidesPGA1_c06280 and PGA1_c06290 are separated by 24 nucleotides PGA1_c06260: PGA1_c06260 - protoheme IX farnesyltransferase CtaB, at 642,029 to 642,970 _c06260 PGA1_c06270: PGA1_c06270 - hypothetical protein, at 642,972 to 643,151 _c06270 PGA1_c06280: PGA1_c06280 - cytochrome c oxidase assembly protein CtaG, at 643,151 to 643,738 _c06280 PGA1_c06290: PGA1_c06290 - cytochrome c oxidase subunit 3, at 643,763 to 644,578 _c06290 Position (kb) 642 643 644Strain fitness (log2 ratio) -1 0 1 2at 642.049 kb on + strandat 642.175 kb on + strand, within PGA1_c06260at 642.708 kb on - strand, within PGA1_c06260at 643.133 kb on + strand, within PGA1_c06270at 643.140 kb on + strandat 643.352 kb on - strand, within PGA1_c06280at 643.648 kb on + strand, within PGA1_c06280at 643.656 kb on - strand, within PGA1_c06280at 643.994 kb on + strand, within PGA1_c06290at 644.002 kb on - strand, within PGA1_c06290

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml
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642,049 + -0.6
642,175 + PGA1_c06260 0.15 -1.5
642,708 - PGA1_c06260 0.72 -0.5
643,133 + PGA1_c06270 0.89 +0.7
643,140 + -0.2
643,352 - PGA1_c06280 0.34 +0.1
643,648 + PGA1_c06280 0.85 +0.7
643,656 - PGA1_c06280 0.86 +2.2
643,994 + PGA1_c06290 0.28 +2.4
644,002 - PGA1_c06290 0.29 +0.7

Or see this region's nucleotide sequence