Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05810

Experiment: m.b. Sisomicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05800 and PGA1_c05810 are separated by 130 nucleotidesPGA1_c05810 and PGA1_c05820 are separated by 104 nucleotides PGA1_c05800: PGA1_c05800 - YeeE/YedE family (DUF395)., at 594,665 to 595,729 _c05800 PGA1_c05810: PGA1_c05810 - putative transporter protein, MFS family, at 595,860 to 597,095 _c05810 PGA1_c05820: PGA1_c05820 - ribosomal protein L11 methyltransferase PrmA, at 597,200 to 598,072 _c05820 Position (kb) 595 596 597 598Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 594.919 kb on - strand, within PGA1_c05800at 594.926 kb on + strand, within PGA1_c05800at 595.016 kb on - strand, within PGA1_c05800at 595.021 kb on - strand, within PGA1_c05800at 595.093 kb on + strand, within PGA1_c05800at 595.221 kb on + strand, within PGA1_c05800at 595.246 kb on + strand, within PGA1_c05800at 595.246 kb on + strand, within PGA1_c05800at 595.246 kb on + strand, within PGA1_c05800at 595.254 kb on - strand, within PGA1_c05800at 595.254 kb on - strand, within PGA1_c05800at 595.254 kb on - strand, within PGA1_c05800at 595.365 kb on - strand, within PGA1_c05800at 595.398 kb on + strand, within PGA1_c05800at 595.400 kb on - strand, within PGA1_c05800at 595.524 kb on + strand, within PGA1_c05800at 595.524 kb on + strand, within PGA1_c05800at 595.524 kb on + strand, within PGA1_c05800at 595.524 kb on + strand, within PGA1_c05800at 595.532 kb on - strand, within PGA1_c05800at 595.691 kb on - strandat 595.693 kb on + strandat 595.693 kb on + strandat 595.701 kb on - strandat 595.711 kb on - strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.805 kb on - strandat 595.805 kb on - strandat 595.805 kb on - strandat 595.805 kb on - strandat 595.838 kb on - strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.870 kb on - strandat 595.913 kb on + strandat 595.938 kb on + strandat 595.938 kb on + strandat 595.938 kb on + strandat 595.938 kb on + strandat 595.945 kb on - strandat 595.946 kb on - strandat 595.964 kb on - strandat 595.966 kb on + strandat 596.032 kb on - strand, within PGA1_c05810at 596.033 kb on + strand, within PGA1_c05810at 596.036 kb on + strand, within PGA1_c05810at 596.036 kb on - strand, within PGA1_c05810at 596.041 kb on - strand, within PGA1_c05810at 596.051 kb on - strand, within PGA1_c05810at 596.081 kb on - strand, within PGA1_c05810at 596.087 kb on + strand, within PGA1_c05810at 596.116 kb on - strand, within PGA1_c05810at 596.128 kb on - strand, within PGA1_c05810at 596.173 kb on + strand, within PGA1_c05810at 596.186 kb on + strand, within PGA1_c05810at 596.191 kb on + strand, within PGA1_c05810at 596.194 kb on - strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.209 kb on - strand, within PGA1_c05810at 596.278 kb on - strand, within PGA1_c05810at 596.299 kb on - strand, within PGA1_c05810at 596.336 kb on - strand, within PGA1_c05810at 596.359 kb on - strand, within PGA1_c05810at 596.359 kb on - strand, within PGA1_c05810at 596.369 kb on - strand, within PGA1_c05810at 596.473 kb on + strand, within PGA1_c05810at 596.507 kb on + strand, within PGA1_c05810at 596.507 kb on + strand, within PGA1_c05810at 596.517 kb on + strand, within PGA1_c05810at 596.565 kb on + strand, within PGA1_c05810at 596.565 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.627 kb on - strand, within PGA1_c05810at 596.714 kb on + strand, within PGA1_c05810at 596.719 kb on + strand, within PGA1_c05810at 596.724 kb on + strand, within PGA1_c05810at 596.727 kb on - strand, within PGA1_c05810at 596.729 kb on + strand, within PGA1_c05810at 596.729 kb on + strand, within PGA1_c05810at 596.729 kb on + strand, within PGA1_c05810at 596.737 kb on - strand, within PGA1_c05810at 596.803 kb on + strand, within PGA1_c05810at 596.803 kb on + strand, within PGA1_c05810at 596.810 kb on - strand, within PGA1_c05810at 596.811 kb on - strand, within PGA1_c05810at 596.849 kb on + strand, within PGA1_c05810at 596.886 kb on + strand, within PGA1_c05810at 596.989 kb on + strandat 596.989 kb on + strandat 596.989 kb on + strandat 596.989 kb on + strandat 596.997 kb on - strandat 596.999 kb on + strandat 597.034 kb on + strandat 597.034 kb on + strandat 597.034 kb on + strandat 597.034 kb on + strandat 597.034 kb on + strandat 597.102 kb on + strandat 597.115 kb on + strandat 597.115 kb on + strandat 597.175 kb on + strandat 597.183 kb on - strandat 597.183 kb on - strandat 597.183 kb on - strandat 597.215 kb on + strandat 597.279 kb on + strandat 597.294 kb on - strand, within PGA1_c05820at 597.302 kb on - strand, within PGA1_c05820at 597.302 kb on - strand, within PGA1_c05820at 597.321 kb on + strand, within PGA1_c05820at 597.393 kb on - strand, within PGA1_c05820at 597.404 kb on + strand, within PGA1_c05820at 597.412 kb on - strand, within PGA1_c05820at 597.421 kb on - strand, within PGA1_c05820at 597.438 kb on - strand, within PGA1_c05820at 597.438 kb on - strand, within PGA1_c05820at 597.475 kb on + strand, within PGA1_c05820at 597.483 kb on - strand, within PGA1_c05820at 597.505 kb on - strand, within PGA1_c05820at 597.578 kb on + strand, within PGA1_c05820at 597.584 kb on - strand, within PGA1_c05820at 597.591 kb on - strand, within PGA1_c05820at 597.593 kb on + strand, within PGA1_c05820at 597.593 kb on + strand, within PGA1_c05820at 597.593 kb on + strand, within PGA1_c05820at 597.601 kb on - strand, within PGA1_c05820at 597.603 kb on + strand, within PGA1_c05820at 597.611 kb on - strand, within PGA1_c05820at 597.611 kb on - strand, within PGA1_c05820at 597.612 kb on + strand, within PGA1_c05820at 597.703 kb on + strand, within PGA1_c05820at 597.703 kb on + strand, within PGA1_c05820at 597.711 kb on - strand, within PGA1_c05820at 597.812 kb on - strand, within PGA1_c05820at 597.828 kb on + strand, within PGA1_c05820at 597.828 kb on + strand, within PGA1_c05820at 597.828 kb on + strand, within PGA1_c05820at 597.832 kb on + strand, within PGA1_c05820at 597.838 kb on + strand, within PGA1_c05820at 597.838 kb on + strand, within PGA1_c05820at 597.846 kb on - strand, within PGA1_c05820at 597.883 kb on + strand, within PGA1_c05820at 598.005 kb on + strandat 598.011 kb on + strandat 598.011 kb on + strandat 598.019 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml
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594,919 - PGA1_c05800 0.24 +0.5
594,926 + PGA1_c05800 0.25 -1.2
595,016 - PGA1_c05800 0.33 -1.0
595,021 - PGA1_c05800 0.33 +1.9
595,093 + PGA1_c05800 0.40 +0.2
595,221 + PGA1_c05800 0.52 +0.6
595,246 + PGA1_c05800 0.55 -0.3
595,246 + PGA1_c05800 0.55 -2.2
595,246 + PGA1_c05800 0.55 -1.4
595,254 - PGA1_c05800 0.55 +0.3
595,254 - PGA1_c05800 0.55 -0.4
595,254 - PGA1_c05800 0.55 +0.0
595,365 - PGA1_c05800 0.66 -0.7
595,398 + PGA1_c05800 0.69 +0.1
595,400 - PGA1_c05800 0.69 -0.1
595,524 + PGA1_c05800 0.81 +0.9
595,524 + PGA1_c05800 0.81 +0.0
595,524 + PGA1_c05800 0.81 -1.2
595,524 + PGA1_c05800 0.81 +2.6
595,532 - PGA1_c05800 0.81 +0.3
595,691 - -0.4
595,693 + +0.3
595,693 + +0.4
595,701 - -0.7
595,711 - -0.0
595,797 + -1.2
595,797 + +1.1
595,797 + +2.5
595,797 + +0.4
595,797 + +0.0
595,797 + +1.1
595,805 - +0.8
595,805 - +0.6
595,805 - +0.1
595,805 - +0.0
595,838 - +2.1
595,862 + -0.5
595,862 + +0.2
595,870 - -0.3
595,913 + +0.5
595,938 + +0.1
595,938 + -1.4
595,938 + +0.0
595,938 + -0.0
595,945 - +3.1
595,946 - +1.1
595,964 - +0.8
595,966 + -0.6
596,032 - PGA1_c05810 0.14 +0.9
596,033 + PGA1_c05810 0.14 -1.7
596,036 + PGA1_c05810 0.14 -0.3
596,036 - PGA1_c05810 0.14 -1.0
596,041 - PGA1_c05810 0.15 +0.8
596,051 - PGA1_c05810 0.15 +1.3
596,081 - PGA1_c05810 0.18 -1.4
596,087 + PGA1_c05810 0.18 +0.1
596,116 - PGA1_c05810 0.21 +0.1
596,128 - PGA1_c05810 0.22 -1.2
596,173 + PGA1_c05810 0.25 -1.6
596,186 + PGA1_c05810 0.26 -0.4
596,191 + PGA1_c05810 0.27 -0.1
596,194 - PGA1_c05810 0.27 +1.1
596,201 + PGA1_c05810 0.28 +0.6
596,201 + PGA1_c05810 0.28 +0.7
596,201 + PGA1_c05810 0.28 +1.2
596,201 + PGA1_c05810 0.28 +1.6
596,201 + PGA1_c05810 0.28 -0.4
596,209 - PGA1_c05810 0.28 +1.2
596,278 - PGA1_c05810 0.34 +2.6
596,299 - PGA1_c05810 0.36 +0.7
596,336 - PGA1_c05810 0.39 +0.0
596,359 - PGA1_c05810 0.40 +1.6
596,359 - PGA1_c05810 0.40 +1.3
596,369 - PGA1_c05810 0.41 -0.4
596,473 + PGA1_c05810 0.50 +0.1
596,507 + PGA1_c05810 0.52 +0.8
596,507 + PGA1_c05810 0.52 +0.1
596,517 + PGA1_c05810 0.53 -0.7
596,565 + PGA1_c05810 0.57 -0.4
596,565 + PGA1_c05810 0.57 +0.5
596,614 + PGA1_c05810 0.61 +2.0
596,614 + PGA1_c05810 0.61 -0.1
596,614 + PGA1_c05810 0.61 +2.4
596,614 + PGA1_c05810 0.61 -1.4
596,622 - PGA1_c05810 0.62 +0.4
596,622 - PGA1_c05810 0.62 +0.3
596,622 - PGA1_c05810 0.62 -1.9
596,622 - PGA1_c05810 0.62 -0.0
596,622 - PGA1_c05810 0.62 -0.8
596,627 - PGA1_c05810 0.62 -0.1
596,714 + PGA1_c05810 0.69 -1.4
596,719 + PGA1_c05810 0.69 -1.6
596,724 + PGA1_c05810 0.70 -1.7
596,727 - PGA1_c05810 0.70 -0.3
596,729 + PGA1_c05810 0.70 -1.0
596,729 + PGA1_c05810 0.70 +0.7
596,729 + PGA1_c05810 0.70 +1.8
596,737 - PGA1_c05810 0.71 -0.3
596,803 + PGA1_c05810 0.76 +0.3
596,803 + PGA1_c05810 0.76 +0.3
596,810 - PGA1_c05810 0.77 +0.1
596,811 - PGA1_c05810 0.77 -2.4
596,849 + PGA1_c05810 0.80 +0.1
596,886 + PGA1_c05810 0.83 -0.7
596,989 + +3.0
596,989 + +0.8
596,989 + +0.6
596,989 + -0.3
596,997 - -0.7
596,999 + +2.0
597,034 + -0.3
597,034 + +1.6
597,034 + -0.5
597,034 + +1.8
597,034 + +1.4
597,102 + +0.4
597,115 + +0.4
597,115 + +0.5
597,175 + -0.7
597,183 - +0.1
597,183 - -1.9
597,183 - -2.1
597,215 + -1.2
597,279 + -0.9
597,294 - PGA1_c05820 0.11 -0.7
597,302 - PGA1_c05820 0.12 -2.9
597,302 - PGA1_c05820 0.12 -3.5
597,321 + PGA1_c05820 0.14 -2.0
597,393 - PGA1_c05820 0.22 -1.2
597,404 + PGA1_c05820 0.23 -3.7
597,412 - PGA1_c05820 0.24 +2.1
597,421 - PGA1_c05820 0.25 -2.7
597,438 - PGA1_c05820 0.27 -2.6
597,438 - PGA1_c05820 0.27 -3.2
597,475 + PGA1_c05820 0.32 -1.7
597,483 - PGA1_c05820 0.32 -0.9
597,505 - PGA1_c05820 0.35 -3.5
597,578 + PGA1_c05820 0.43 -0.2
597,584 - PGA1_c05820 0.44 +0.1
597,591 - PGA1_c05820 0.45 -1.1
597,593 + PGA1_c05820 0.45 +0.4
597,593 + PGA1_c05820 0.45 +0.6
597,593 + PGA1_c05820 0.45 -2.9
597,601 - PGA1_c05820 0.46 +0.6
597,603 + PGA1_c05820 0.46 -0.9
597,611 - PGA1_c05820 0.47 -1.0
597,611 - PGA1_c05820 0.47 -1.6
597,612 + PGA1_c05820 0.47 -0.6
597,703 + PGA1_c05820 0.58 -1.2
597,703 + PGA1_c05820 0.58 -1.2
597,711 - PGA1_c05820 0.59 -1.4
597,812 - PGA1_c05820 0.70 +0.1
597,828 + PGA1_c05820 0.72 -1.5
597,828 + PGA1_c05820 0.72 -3.1
597,828 + PGA1_c05820 0.72 -0.2
597,832 + PGA1_c05820 0.72 -1.2
597,838 + PGA1_c05820 0.73 -1.2
597,838 + PGA1_c05820 0.73 -2.2
597,846 - PGA1_c05820 0.74 -0.0
597,883 + PGA1_c05820 0.78 -1.6
598,005 + -1.6
598,011 + +0.3
598,011 + -0.9
598,019 - -0.9

Or see this region's nucleotide sequence